Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06826 Brassica carinata HOM05D000753 ORTHO05D017534 1.1e-59 233.0 114 100.0
BolC8t52636H Brassica oleracea HOM05D000753 ORTHO05D017534 1.1e-59 233.0 114 100.0
C08p51100 Brassica napus HOM05D000753 ORTHO05D017534 4.3e-59 231.1 113 100.0
BcaC02g10079 Brassica carinata HOM05D016796 ORTHO05D017534 3.7e-55 218.0 114 94.7
C04p33010 Brassica napus HOM05D000753 ORTHO05D017534 8.3e-55 216.9 113 95.6
BcaC07g38529 Brassica carinata HOM05D000753 ORTHO05D017534 7.0e-54 213.8 114 92.1
A01p36920 Brassica napus HOM05D000753 ORTHO05D003622 1.4e-38 162.9 82 97.6
BraA01t03751Z Brassica rapa HOM05D000753 ORTHO05D003622 1.4e-38 162.9 82 97.6
BcaB04g20843 Brassica carinata HOM05D000753 ORTHO05D003622 7.1e-38 160.6 82 96.3
BcaC09g48700 Brassica carinata HOM05D000753 ORTHO05D003622 1.6e-37 159.5 82 96.3
C01p46810 Brassica napus HOM05D000753 ORTHO05D003622 1.6e-37 159.5 82 96.3
BolC1t04654H Brassica oleracea HOM05D000753 ORTHO05D003622 1.6e-37 159.5 82 96.3
Thhalv10020956m.g Eutrema salsugineum HOM05D000753 ORTHO05D003622 6.0e-37 157.5 82 95.1
BolC4t24864H Brassica oleracea HOM05D000753 ORTHO05D017534 4.3e-35 151.4 79 94.9
BcaC05g28791 Brassica carinata HOM05D000753 ORTHO05D003622 2.1e-34 149.1 82 90.2
Sp3g15600 Schrenkiella parvula HOM05D000753 ORTHO05D003622 2.3e-33 145.6 82 90.2
AT3G17430 Arabidopsis thaliana HOM05D000753 ORTHO05D003622 3.1e-33 145.2 82 87.8
Carub.0003s1715 Capsella rubella HOM05D000753 ORTHO05D003622 4.0e-33 144.8 82 87.8
AL3G30510 Arabidopsis lyrata HOM05D000753 ORTHO05D003622 8.9e-33 143.7 82 86.6
CARHR092750 Cardamine hirsuta HOM05D000753 ORTHO05D003622 6.4e-31 137.5 82 84.1
BolC5t33640H Brassica oleracea HOM05D000753 ORTHO05D003622 1.7e-28 129.4 82 82.9
BcaB06g25846 Brassica carinata HOM05D000753 ORTHO05D017534 1.4e-25 119.8 75 84.0
Aa31LG8G4380 Aethionema arabicum HOM05D000753 ORTHO05D003622 2.6e-24 115.5 81 71.6
Aa31LG10G5530 Aethionema arabicum HOM05D000753 ORTHO05D003622 5.8e-24 114.4 85 71.8
Sp1g35190 Schrenkiella parvula HOM05D000753 ORTHO05D003622 9.9e-24 113.6 81 72.8
Thhalv10011587m.g Eutrema salsugineum HOM05D000753 ORTHO05D003622 8.4e-23 110.5 81 74.1
CARHR037860 Cardamine hirsuta HOM05D000753 ORTHO05D003622 1.1e-22 110.2 81 74.1
AL1G54820 Arabidopsis lyrata HOM05D000753 ORTHO05D003622 1.9e-22 109.4 81 74.1
AT1G48230 Arabidopsis thaliana HOM05D000753 ORTHO05D003622 2.4e-22 109.0 81 74.1
BcaB04g17456 Brassica carinata HOM05D000753 ORTHO05D003622 2.4e-22 109.0 82 72.0
BcaC07g37162 Brassica carinata HOM05D000753 ORTHO05D003622 2.4e-22 109.0 82 72.0
A08p05000 Brassica napus HOM05D000753 ORTHO05D003622 2.4e-22 109.0 82 72.0
A08p05030 Brassica napus HOM05D000753 ORTHO05D003622 2.4e-22 109.0 82 72.0
C08p05330 Brassica napus HOM05D000753 ORTHO05D003622 2.4e-22 109.0 82 72.0
BraA08t32522Z Brassica rapa HOM05D000753 ORTHO05D003622 2.4e-22 109.0 82 72.0
THA.LOC104802615 Tarenaya hassleriana HOM05D000753 ORTHO05D003622 3.2e-22 108.6 90 70.0
A05p32350 Brassica napus HOM05D000753 ORTHO05D003622 7.1e-22 107.5 82 73.2
Carub.0001s3737 Capsella rubella HOM05D000753 ORTHO05D003622 1.7e-20 102.8 81 70.4
Thecc.04G312300 Theobroma cacao HOM05D000753 ORTHO05D003622 1.7e-20 102.8 87 62.1
BcaC08g43015 Brassica carinata HOM05D000753 ORTHO05D003622 2.3e-20 102.4 81 70.4
A06p04620 Brassica napus HOM05D000753 ORTHO05D003622 2.3e-20 102.4 81 70.4
C06p02700 Brassica napus HOM05D000753 ORTHO05D003622 2.3e-20 102.4 81 70.4
BolC6t35396H Brassica oleracea HOM05D000753 ORTHO05D003622 2.3e-20 102.4 81 70.4
BraA06t23666Z Brassica rapa HOM05D000753 ORTHO05D003622 2.3e-20 102.4 81 70.4
Duzib212G0655 Durio zibethinus HOM05D000753 ORTHO05D003622 2.3e-20 102.4 89 61.8
Duzib151G0280 Durio zibethinus HOM05D000753 ORTHO05D003622 3.9e-20 101.7 85 58.8
TPR.G12557 Trifolium pratense HOM05D000753 ORTHO05D003622 5.1e-20 101.3 88 63.6
THA.LOC104821811 Tarenaya hassleriana HOM05D000753 ORTHO05D003622 6.6e-20 100.9 75 73.3
MELO3C006748.2 Cucumis melo HOM05D000753 ORTHO05D003622 1.5e-19 99.8 83 63.9
arahy.Tifrunner.gnm1.ann1.G9V4C0 Arachis hypogaea HOM05D000753 ORTHO05D003622 2.5e-19 99.0 88 62.5
Ca_21380_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 2.5e-19 99.0 87 62.1
Ca_30148_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 2.5e-19 99.0 87 62.1
arahy.Tifrunner.gnm1.ann1.EDF5ZB Arachis hypogaea HOM05D000753 ORTHO05D003622 3.3e-19 98.6 88 62.5
Aqoxy5G00334 Aquilegia oxysepala HOM05D000753 ORTHO05D003622 4.3e-19 98.2 84 61.9
Ca_26461_v3 Cicer arietinum L. HOM05D000753 ORTHO05D003622 4.3e-19 98.2 87 62.1
Psat0s2012g0120 Pisum sativum HOM05D000753 ORTHO05D003622 4.3e-19 98.2 88 62.5
BcaB07g33781 Brassica carinata HOM05D000753 ORTHO05D003622 7.3e-19 97.4 83 68.7
C05p49000 Brassica napus HOM05D000753 ORTHO05D003622 7.3e-19 97.4 49 95.9
Cpa.g.sc146.29 Carica papaya HOM05D000753 ORTHO05D003622 9.6e-19 97.1 90 64.4
ClCG04G007460 Citrullus lanatus HOM05D000753 ORTHO05D003622 9.6e-19 97.1 81 61.7
BcaC08g43017 Brassica carinata HOM05D000753 ORTHO05D003622 1.6e-18 96.3 83 68.7
ClCG05G006840 Citrullus lanatus HOM05D000753 ORTHO05D003622 1.6e-18 96.3 82 61.0
CsaV3_3G015490 Cucumis sativus L. HOM05D000753 ORTHO05D003622 1.6e-18 96.3 82 61.0
MELO3C003206.2 Cucumis melo HOM05D000753 ORTHO05D003622 2.1e-18 95.9 81 60.5
Phvul.003G121200 Phaseolus vulgaris HOM05D000753 ORTHO05D003622 2.1e-18 95.9 86 60.5
CsaV3_4G025800 Cucumis sativus L. HOM05D000753 ORTHO05D003622 2.8e-18 95.5 81 59.3
Ciclev10005167m.g Citrus clementina HOM05D000753 ORTHO05D003622 3.6e-18 95.1 89 62.9
Glyma.13G120000 Glycine max HOM05D000753 ORTHO05D003622 6.2e-18 94.4 87 58.6
Eucgr.B03955 Eucalyptus grandis HOM05D000753 ORTHO05D003622 1.1e-17 93.6 90 56.7
Lalb_Chr11g0073531 Lupinus albus HOM05D000753 ORTHO05D003622 1.1e-17 93.6 85 64.7
Prupe.1G106200 Prunus persica HOM05D000753 ORTHO05D003622 1.1e-17 93.6 83 60.2
Sed0025915 Sechium edule HOM05D000753 ORTHO05D003622 1.4e-17 93.2 82 59.8
VMungo1215G1179 Vigna mungo HOM05D000753 ORTHO05D003622 2.4e-17 92.4 89 56.2
Medtr4g123900 Medicago truncatula HOM05D000753 ORTHO05D003622 3.1e-17 92.0 88 61.4
MD13G1141000 Malus domestica HOM05D000753 ORTHO05D003622 4.0e-17 91.7 83 61.4
QL06p014135 Quercus lobata HOM05D000753 ORTHO05D003622 4.0e-17 91.7 85 61.2
Lj6g0005825 Lotus japonicus HOM05D000753 ORTHO05D003622 5.3e-17 91.3 84 63.1
Phvul.009G219500 Phaseolus vulgaris HOM05D000753 ORTHO05D003622 5.3e-17 91.3 88 55.7
Nn6g35752 Nelumbo nucifera HOM05D000753 ORTHO05D003622 9.0e-17 90.5 85 54.1
Glyma.17G040300 Glycine max HOM05D000753 ORTHO05D003622 1.2e-16 90.1 88 56.8
Gohir.A01G036200 Gossypium hirsutum HOM05D000753 ORTHO05D003622 1.5e-16 89.7 82 57.3
Manes.03G211400 Manihot esculenta HOM05D000753 ORTHO05D003622 1.5e-16 89.7 90 58.9
Gohir.D01G023595 Gossypium hirsutum HOM05D000753 ORTHO05D003622 2.0e-16 89.4 82 57.3
Gorai.002G032000 Gossypium raimondii HOM05D000753 ORTHO05D003622 2.0e-16 89.4 82 57.3
DCAR_030422 Daucus carota HOM05D000753 ORTHO05D003622 2.6e-16 89.0 89 56.2
Glyma.09G078700 Glycine max HOM05D000753 ORTHO05D003622 2.6e-16 89.0 89 58.4
MD16G1137100 Malus domestica HOM05D000753 ORTHO05D003622 2.6e-16 89.0 83 60.2
Cfa015724 Carpinus fangiana HOM05D000753 ORTHO05D003622 3.4e-16 88.6 85 60.0
Dinv29515 Davidia involucrata HOM05D000753 ORTHO05D003622 4.5e-16 88.2 87 58.6
Glyma.15G188900 Glycine max HOM05D000753 ORTHO05D003622 4.5e-16 88.2 89 57.3
Gohir.A09G067300 Gossypium hirsutum HOM05D000753 ORTHO05D003622 4.5e-16 88.2 84 57.1
HanXRQChr09g0245821 Helianthus annuus HOM05D000753 ORTHO05D003622 5.8e-16 87.8 91 52.7
TWI09G0158 Tripterygium wilfordii HOM05D000753 ORTHO05D003622 5.8e-16 87.8 90 55.6
RcHm_v2.0_Chr4g0427391 Rosa chinensis HOM05D000753 ORTHO05D003622 9.9e-16 87.0 86 58.1
Atru.chr4.3141 Acer truncatum HOM05D000753 ORTHO05D003622 1.7e-15 86.3 83 56.6
Actinidia18504 Actinidia chinensis HOM05D000753 ORTHO05D003622 1.7e-15 86.3 89 55.1
FvH4_4g21460 Fragaria vesca HOM05D000753 ORTHO05D003622 2.2e-15 85.9 86 55.8
GSVIVG01017682001 Vitis vinifera HOM05D000753 ORTHO05D003622 2.2e-15 85.9 94 55.3
FAN07G0388 Fragaria x ananassa HOM05D000753 ORTHO05D003622 2.9e-15 85.5 85 55.3
FAN17G2049 Fragaria x ananassa HOM05D000753 ORTHO05D003622 2.9e-15 85.5 85 55.3
Lalb_Chr08g0233031 Lupinus albus HOM05D000753 ORTHO05D003622 2.9e-15 85.5 85 65.9
TAR365G0528 Trochodendron aralioides HOM05D000753 ORTHO05D010249 3.8e-15 85.1 89 55.1
TAR365G0537 Trochodendron aralioides HOM05D000753 ORTHO05D003622 3.8e-15 85.1 90 55.6
VMungo1309G2024 Vigna mungo HOM05D000753 ORTHO05D003622 4.9e-15 84.7 90 55.6
CSS0042988 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 6.4e-15 84.3 89 53.9
CiPaw.01G129900 Carya illinoinensis HOM05D000753 ORTHO05D003622 6.4e-15 84.3 85 62.4
Gohir.D09G066900 Gossypium hirsutum HOM05D000753 ORTHO05D003622 1.1e-14 83.6 84 53.6
Gorai.006G081400 Gossypium raimondii HOM05D000753 ORTHO05D003622 1.1e-14 83.6 84 53.6
Potri.010G001700 Populus trichocarpa HOM05D000753 ORTHO05D003622 1.1e-14 83.6 85 54.1
Eucgr.H04120 Eucalyptus grandis HOM05D000753 ORTHO05D003622 1.4e-14 83.2 85 55.3
Lj6C700T8 Lonicera japonica HOM05D000753 ORTHO05D003622 1.4e-14 83.2 91 56.0
Rhsim04G0247900 Rhododendron simsii HOM05D000753 ORTHO05D003622 1.4e-14 83.2 87 57.5
Ah.05g168870 Amaranthus hybridus HOM05D000753 ORTHO05D003622 3.2e-14 82.0 85 58.8
CANSAT78G2121 Cannabis sativa HOM05D000753 ORTHO05D003622 7.1e-14 80.9 82 58.5
ECA246G1535 Erigeron canadensis HOM05D000753 ORTHO05D003622 7.1e-14 80.9 89 55.1
Sabra10G0001400 Salix brachista HOM05D000753 ORTHO05D003622 7.1e-14 80.9 85 52.9
AUR62039325 Chenopodium quinoa HOM05D000753 ORTHO05D003622 9.3e-14 80.5 93 51.6
Oeu037625.1 Olea europaea HOM05D000753 ORTHO05D003622 9.3e-14 80.5 82 53.7
Actinidia06398 Actinidia chinensis HOM05D000753 ORTHO05D003622 1.6e-13 79.7 89 52.8
Peaxi162Scf00166g00427 Petunia axillaris HOM05D000753 ORTHO05D003622 1.6e-13 79.7 90 53.3
AUR62022452 Chenopodium quinoa HOM05D000753 ORTHO05D003622 2.7e-13 79.0 93 51.6
Hund26619 Selenicereus undatus HOM05D000753 ORTHO05D003622 2.7e-13 79.0 92 47.8
CSS0036063 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 3.5e-13 78.6 92 51.1
EL10Ac1g01769 Beta vulgaris HOM05D000753 ORTHO05D003622 4.6e-13 78.2 92 53.3
COL.COLO4_34522 Corchorus olitorius HOM05D000753 ORTHO05D017534 4.6e-13 78.2 69 56.5
Solyc02g088900.3 Solanum lycopersicum HOM05D000753 ORTHO05D003622 4.6e-13 78.2 88 52.3
Sopen02g033590 Solanum pennellii HOM05D000753 ORTHO05D003622 4.6e-13 78.2 88 52.3
vmacro02364 Vaccinium macrocarpon HOM05D000753 ORTHO05D003622 4.6e-13 78.2 86 51.2
CSS0038867 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 6.0e-13 77.8 90 50.0
DCAR_023400 Daucus carota HOM05D000753 ORTHO05D003622 7.9e-13 77.4 90 48.9
Dinv12092 Davidia involucrata HOM05D000753 ORTHO05D003622 7.9e-13 77.4 87 51.7
Sc10g0008510 Simmondsia chinensis HOM05D000753 ORTHO05D003622 1.0e-12 77.0 89 49.4
Solyc02g066910.3 Solanum lycopersicum HOM05D000753 ORTHO05D003622 1.0e-12 77.0 85 54.1
Sopen02g016100 Solanum pennellii HOM05D000753 ORTHO05D003622 1.0e-12 77.0 85 54.1
ATR1136G027 Amborella trichopoda HOM05D000753 ORTHO05D003622 1.3e-12 76.6 87 51.7
Hma1.2p1_1160F.1_g262520 Hydrangea macrophylla HOM05D000753 ORTHO05D003622 1.3e-12 76.6 83 55.4
CAN.G398.22 Capsicum annuum HOM05D000753 ORTHO05D003622 1.8e-12 76.3 85 52.9
DCAR_002549 Daucus carota HOM05D000753 ORTHO05D003622 1.8e-12 76.3 80 48.8
Nitab4.5_0007320g0030 Nicotiana tabacum HOM05D000753 ORTHO05D003622 1.8e-12 76.3 90 52.2
Rhsim13G0000100 Rhododendron simsii HOM05D000753 ORTHO05D003622 1.8e-12 76.3 86 51.2
Cc01_g17330 Coffea canephora HOM05D000753 ORTHO05D003622 2.3e-12 75.9 91 49.5
Lsat_1_v5_gn_1_39900 Lactuca sativa HOM05D000753 ORTHO05D003622 2.3e-12 75.9 84 51.2
Aqoxy2G00409 Aquilegia oxysepala HOM05D000753 ORTHO05D003622 3.9e-12 75.1 78 53.8
CDE07G1952 Ceratophyllum demersum HOM05D000753 ORTHO05D003622 3.9e-12 75.1 90 53.3
Dinv33163 Davidia involucrata HOM05D000753 ORTHO05D003622 3.9e-12 75.1 87 49.4
CAN.G497.100 Capsicum annuum HOM05D000753 ORTHO05D003622 5.1e-12 74.7 90 51.1
PSO832G0943 Papaver somniferum HOM05D000753 ORTHO05D003622 8.7e-12 73.9 89 48.3
DCAR_026950 Daucus carota HOM05D000753 ORTHO05D003622 1.5e-11 73.2 89 46.1
CSS0017685 Camellia sinensis var. sinensis HOM05D000753 ORTHO05D003622 2.5e-11 72.4 93 48.4
CiPaw.08G084100 Carya illinoinensis HOM05D000753 ORTHO05D003622 2.5e-11 72.4 93 46.2
Dinv18026 Davidia involucrata HOM05D000753 ORTHO05D003622 2.5e-11 72.4 80 57.5
PSO210G5412 Papaver somniferum HOM05D000753 ORTHO05D003622 2.5e-11 72.4 89 47.2
SGA_v2.0_scaffold227G43199 Striga asiatica HOM05D000753 ORTHO05D003622 2.5e-11 72.4 89 44.9
Oeu016619.1 Olea europaea HOM05D000753 ORTHO05D003622 3.3e-11 72.0 92 45.7
CDE04G3027 Ceratophyllum demersum HOM05D000753 ORTHO05D003622 4.3e-11 71.6 90 53.3
Nitab4.5_0003841g0030 Nicotiana tabacum HOM05D000753 ORTHO05D003622 5.6e-11 71.2 90 50.0
PGSC0003DMG400025156 Solanum tuberosum HOM05D000753 ORTHO05D003622 5.6e-11 71.2 85 50.6
unitig_26.g10602 Utricularia gibba HOM05D000753 ORTHO05D003622 5.6e-11 71.2 85 49.4
PGSC0003DMG400001459 Solanum tuberosum HOM05D000753 ORTHO05D003622 7.4e-11 70.9 75 56.0
FAN12G3361 Fragaria x ananassa HOM05D000753 ORTHO05D003622 1.6e-10 69.7 89 44.9
Potri.008G214300 Populus trichocarpa HOM05D000753 ORTHO05D003622 1.6e-10 69.7 85 51.8
CiPaw.07G124100 Carya illinoinensis HOM05D000753 ORTHO05D003622 2.8e-10 68.9 90 45.6
Psat6g077920 Pisum sativum HOM05D003208 ORTHO05D009148 2.8e-10 68.9 70 55.7
Migut.N00004 Erythranthe guttata HOM05D000753 ORTHO05D003622 3.6e-10 68.6 77 48.1
MBI06_g17220_MAGBIO Magnolia biondii HOM05D000753 ORTHO05D003622 3.6e-10 68.6 89 47.2
SGA_v2.0_scaffold449G51792 Striga asiatica HOM05D000753 ORTHO05D003622 1.1e-09 67.0 90 43.3
TAR633G1520 Trochodendron aralioides HOM05D000753 ORTHO05D003622 2.4e-09 65.9 71 50.7
GSVIVG01028211001 Vitis vinifera HOM05D000753 ORTHO05D003622 4.0e-09 65.1 93 47.3
DCAR_012306 Daucus carota HOM05D000753 ORTHO05D003622 6.9e-09 64.3 79 50.6
Haze_00774 Corylus avellana HOM05D000753 ORTHO05D003622 9.0e-09 63.9 147 34.7
MSTRG.9728 Avicennia marina HOM05D000753 ORTHO05D003622 1.2e-08 63.5 72 48.6
arahy.Tifrunner.gnm1.ann1.B6KC6C Arachis hypogaea HOM05D000753 ORTHO05D003622 1.5e-08 63.2 55 54.5
Migut.G01157 Erythranthe guttata HOM05D000753 ORTHO05D003622 7.6e-08 60.8 76 47.4
arahy.Tifrunner.gnm1.ann1.XT3RX0 Arachis hypogaea HOM05D000753 ORTHO05D003622 1.3e-07 60.1 55 50.9
Lj1A9G43 Lonicera japonica HOM05D000753 ORTHO05D003622 1.7e-07 59.7 72 50.0
Nitab4.5_0000212g0260 Nicotiana tabacum HOM05D000753 ORTHO05D003622 4.9e-07 58.2 44 65.9
Lj1g0018517 Lotus japonicus HOM05D000753 ORTHO05D003622 6.4e-07 57.8 75 45.3
Zm00001eb054220 Zea mays HOM05D000753 ORTHO05D003622 6.4e-07 57.8 88 44.3
Glyma.19G220400 Glycine max HOM05D000753 ORTHO05D003622 8.4e-07 57.4 74 45.9
vmacro08008 Vaccinium macrocarpon HOM05D000753 ORTHO05D003622 2.4e-06 55.8 84 45.2
Lalb_Chr18g0046481 Lupinus albus HOM05D000753 ORTHO05D003622 5.5e-06 54.7 74 44.6


User provided reference genes

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