Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06819 Brassica carinata HOM05D001044 ORTHO05D015489 2.0e-95 352.4 183 100.0
C02p49370 Brassica napus HOM05D001044 ORTHO05D015489 2.5e-45 186.0 116 87.9
C03p38610 Brassica napus HOM05D001044 ORTHO05D015489 6.2e-44 181.4 99 96.0
BolC3t16134H Brassica oleracea HOM05D001044 ORTHO05D015489 1.8e-43 179.9 99 94.9
BcaNung05709 Brassica carinata HOM05D001044 ORTHO05D015489 2.0e-42 176.4 109 88.1
C03p45650 Brassica napus HOM05D001044 ORTHO05D015489 2.0e-42 176.4 109 88.1
BcaB02g08037 Brassica carinata HOM05D001044 ORTHO05D006993 2.1e-39 166.4 112 82.1
Sp7g05800 Schrenkiella parvula HOM05D001044 ORTHO05D006993 1.0e-38 164.1 113 83.2
C04p43670 Brassica napus HOM05D001044 ORTHO05D006993 1.4e-35 153.7 111 81.1
BcaC02g09519 Brassica carinata HOM05D001044 ORTHO05D006993 3.1e-35 152.5 111 80.2
BolC4t25948H Brassica oleracea HOM05D001044 ORTHO05D006993 3.1e-35 152.5 111 80.2
Thhalv10004689m.g Eutrema salsugineum HOM05D001044 ORTHO05D006993 9.9e-34 147.5 112 77.7
BraA04t16686Z Brassica rapa HOM05D001044 ORTHO05D006993 3.8e-33 145.6 111 79.3
A04p10190 Brassica napus HOM05D001044 ORTHO05D006993 4.9e-33 145.2 111 79.3
CARHR216450 Cardamine hirsuta HOM05D001044 ORTHO05D006993 6.4e-33 144.8 114 75.4
AL7G45260 Arabidopsis lyrata HOM05D001044 ORTHO05D006993 5.4e-32 141.7 115 73.9
BcaB06g27030 Brassica carinata HOM05D001044 ORTHO05D006993 9.3e-32 141.0 111 74.8
Aa31LG9G17820 Aethionema arabicum HOM05D001044 ORTHO05D006993 1.2e-31 140.6 115 72.2
Carub.0007s3194 Capsella rubella HOM05D001044 ORTHO05D006993 6.0e-31 138.3 114 72.8
C08p19380 Brassica napus HOM05D001044 ORTHO05D015489 6.7e-30 134.8 78 91.0
AT5G36290 Arabidopsis thaliana HOM05D001044 ORTHO05D006993 4.3e-29 132.1 115 69.6
THA.LOC104805697 Tarenaya hassleriana HOM05D001044 ORTHO05D006993 2.6e-26 122.9 122 65.6
BcaC03g17024 Brassica carinata HOM05D001044 ORTHO05D015489 4.5e-26 122.1 77 89.6
BolC2t11023H Brassica oleracea HOM05D001044 ORTHO05D015489 4.5e-26 122.1 78 88.5
THA.LOC104823812 Tarenaya hassleriana HOM05D001044 ORTHO05D006993 9.3e-24 114.4 112 62.5
BcaC01g03348 Brassica carinata HOM05D001044 ORTHO05D015489 2.7e-23 112.8 73 87.7
Cpa.g.sc39.1 Carica papaya HOM05D001044 ORTHO05D006993 1.0e-22 110.9 116 59.5
Atru.chr12.1793 Acer truncatum HOM05D001044 ORTHO05D006993 2.3e-22 109.8 114 59.6
COL.COLO4_27386 Corchorus olitorius HOM05D001044 ORTHO05D006993 3.7e-20 102.4 116 56.9
EL10Ac4g09975 Beta vulgaris HOM05D001044 ORTHO05D006993 1.1e-19 100.9 110 60.0
Ciclev10012397m.g Citrus clementina HOM05D001044 ORTHO05D006993 1.1e-19 100.9 111 57.7
Thecc.05G199900 Theobroma cacao HOM05D001044 ORTHO05D006993 1.4e-19 100.5 117 57.3
Gohir.D11G320000 Gossypium hirsutum HOM05D001044 ORTHO05D006993 1.8e-19 100.1 116 56.0
CSS0016478 Camellia sinensis var. sinensis HOM05D001044 ORTHO05D006993 2.4e-19 99.8 108 58.3
Gorai.007G350200 Gossypium raimondii HOM05D001044 ORTHO05D006993 2.4e-19 99.8 116 56.0
Duzib177G0876 Durio zibethinus HOM05D001044 ORTHO05D006993 5.3e-19 98.6 116 53.4
Duzib106G1207 Durio zibethinus HOM05D001044 ORTHO05D006993 6.9e-19 98.2 116 53.4
Actinidia34781 Actinidia chinensis HOM05D001044 ORTHO05D006993 2.0e-18 96.7 110 57.3
Gohir.A11G304600 Gossypium hirsutum HOM05D001044 ORTHO05D006993 2.6e-18 96.3 120 53.3
Hund21898 Selenicereus undatus HOM05D001044 ORTHO05D006993 2.6e-18 96.3 111 57.7
TWI18G0428 Tripterygium wilfordii HOM05D001044 ORTHO05D006993 3.4e-18 95.9 106 53.8
TWI36G0022 Tripterygium wilfordii HOM05D001044 ORTHO05D006993 7.6e-18 94.7 106 53.8
Haze_04546 Corylus avellana HOM05D001044 ORTHO05D006993 1.3e-17 94.0 115 58.3
QL01p048543 Quercus lobata HOM05D001044 ORTHO05D006993 1.3e-17 94.0 109 56.0
Rhsim09G0129800 Rhododendron simsii HOM05D001044 ORTHO05D006993 1.7e-17 93.6 115 55.7
CANSAT54G0917 Cannabis sativa HOM05D001044 ORTHO05D006993 3.8e-17 92.4 115 54.8
FAN02G2451 Fragaria x ananassa HOM05D001044 ORTHO05D006993 3.8e-17 92.4 112 55.4
FAN05G0602 Fragaria x ananassa HOM05D001044 ORTHO05D006993 4.9e-17 92.0 112 55.4
HanXRQChr16g0512051 Helianthus annuus HOM05D001044 ORTHO05D006993 6.5e-17 91.7 115 54.8
Nitab4.5_0002233g0040 Nicotiana tabacum HOM05D001044 ORTHO05D006993 6.5e-17 91.7 110 57.3
Oeu040499.1 Olea europaea HOM05D001044 ORTHO05D006993 6.5e-17 91.7 115 57.4
FvH4_6g00560 Fragaria vesca HOM05D001044 ORTHO05D006993 8.4e-17 91.3 112 54.5
FAN14G0902 Fragaria x ananassa HOM05D001044 ORTHO05D006993 8.4e-17 91.3 112 54.5
Phvul.008G054700 Phaseolus vulgaris HOM05D001044 ORTHO05D006993 8.4e-17 91.3 93 60.2
Sc09g0001500 Simmondsia chinensis HOM05D001044 ORTHO05D006993 8.4e-17 91.3 107 58.9
Cc09_g03560 Coffea canephora HOM05D001044 ORTHO05D006993 1.1e-16 90.9 115 55.7
MD12G1260000 Malus domestica HOM05D001044 ORTHO05D006993 1.1e-16 90.9 116 53.4
CsaV3_2G009660 Cucumis sativus L. HOM05D001044 ORTHO05D006993 1.4e-16 90.5 118 50.0
MD04G1244200 Malus domestica HOM05D001044 ORTHO05D006993 1.4e-16 90.5 116 54.3
Hund07341 Selenicereus undatus HOM05D001044 ORTHO05D006993 1.4e-16 90.5 107 57.9
FAN09G4672 Fragaria x ananassa HOM05D000001 ORTHO05D010091 1.9e-16 90.1 112 53.6
Lsat_1_v5_gn_8_2141 Lactuca sativa HOM05D001044 ORTHO05D006993 1.9e-16 90.1 116 53.4
Oeu010159.1 Olea europaea HOM05D001044 ORTHO05D006993 1.9e-16 90.1 116 56.0
Peaxi162Scf00253g00073 Petunia axillaris HOM05D001044 ORTHO05D006993 1.9e-16 90.1 107 58.9
Lj1A1227G89 Lonicera japonica HOM05D001044 ORTHO05D006993 2.5e-16 89.7 108 54.6
Sabra13G0077200 Salix brachista HOM05D001044 ORTHO05D006993 2.5e-16 89.7 114 54.4
ECA232G1713 Erigeron canadensis HOM05D002771 ORTHO05D003078 3.2e-16 89.4 112 55.4
Nitab4.5_0001308g0140 Nicotiana tabacum HOM05D001044 ORTHO05D006993 3.2e-16 89.4 110 55.5
RcHm_v2.0_Chr3g0447951 Rosa chinensis HOM05D001044 ORTHO05D006993 3.2e-16 89.4 109 55.0
Eucgr.H01386 Eucalyptus grandis HOM05D001044 ORTHO05D006993 4.2e-16 89.0 100 54.0
Glyma.18G241400 Glycine max HOM05D001044 ORTHO05D006993 4.2e-16 89.0 93 59.1
vmacro10407 Vaccinium macrocarpon HOM05D001044 ORTHO05D006993 4.2e-16 89.0 108 54.6
Dinv29108 Davidia involucrata HOM05D001044 ORTHO05D006993 5.5e-16 88.6 114 55.3
Sed0003335 Sechium edule HOM05D001044 ORTHO05D006993 5.5e-16 88.6 103 56.3
Sed0016855 Sechium edule HOM05D001044 ORTHO05D006993 5.5e-16 88.6 103 54.4
CiPaw.01G093000 Carya illinoinensis HOM05D001044 ORTHO05D006993 7.1e-16 88.2 108 55.6
Glyma.09G251100 Glycine max HOM05D001044 ORTHO05D006993 7.1e-16 88.2 93 58.1
Potri.013G086700 Populus trichocarpa HOM05D001044 ORTHO05D006993 7.1e-16 88.2 110 53.6
SalBow1G6469 Salvia bowleyana HOM05D001044 ORTHO05D006993 7.1e-16 88.2 112 53.6
TAR365G1064 Trochodendron aralioides HOM05D001044 ORTHO05D006993 7.1e-16 88.2 110 51.8
MSTRG.27387 Avicennia marina HOM05D001044 ORTHO05D006993 9.3e-16 87.8 111 55.9
Peaxi162Scf00344g01310 Petunia axillaris HOM05D001044 ORTHO05D006993 9.3e-16 87.8 111 56.8
Psat3g138560 Pisum sativum HOM05D001044 ORTHO05D006993 9.3e-16 87.8 109 48.6
Sopen11g004670 Solanum pennellii HOM05D001044 ORTHO05D006993 9.3e-16 87.8 114 55.3
Dinv06979 Davidia involucrata HOM05D001044 ORTHO05D006993 1.2e-15 87.4 97 58.8
Ca_07976_v3 Cicer arietinum L. HOM05D001044 ORTHO05D006993 1.6e-15 87.0 109 47.7
ClCG11G010760 Citrullus lanatus HOM05D001044 ORTHO05D006993 1.6e-15 87.0 103 53.4
Lalb_Chr01g0020341 Lupinus albus HOM05D001044 ORTHO05D006993 1.6e-15 87.0 109 53.2
VMungo1383G1540 Vigna mungo HOM05D001044 ORTHO05D006993 1.6e-15 87.0 92 57.6
Zm00001eb169910 Zea mays HOM05D001044 ORTHO05D006993 1.6e-15 87.0 95 57.9
Medtr7g079850 Medicago truncatula HOM05D001044 ORTHO05D006993 2.1e-15 86.7 109 47.7
Oeu023164.2 Olea europaea HOM05D001044 ORTHO05D006993 2.1e-15 86.7 114 50.9
Potri.019G053400 Populus trichocarpa HOM05D001044 ORTHO05D006993 2.1e-15 86.7 97 61.9
Prupe.6G360700 Prunus persica HOM05D001044 ORTHO05D006993 2.1e-15 86.7 115 51.3
PGR031G0917 Punica granatum HOM05D001044 ORTHO05D006993 2.1e-15 86.7 99 56.6
Lsat_1_v5_gn_9_48781 Lactuca sativa HOM05D001044 ORTHO05D006993 2.7e-15 86.3 113 54.0
Os11g0472500 Oryza sativa ssp. japonica HOM05D001044 ORTHO05D006993 2.7e-15 86.3 111 52.3
CAN.G1177.13 Capsicum annuum HOM05D001044 ORTHO05D006993 3.5e-15 85.9 113 54.9
Lalb_Chr19g0127601 Lupinus albus HOM05D001044 ORTHO05D006993 4.6e-15 85.5 109 53.2
Solyc11g008890.2 Solanum lycopersicum HOM05D001044 ORTHO05D006993 4.6e-15 85.5 114 54.4
Migut.F01875 Erythranthe guttata HOM05D001044 ORTHO05D006993 6.0e-15 85.1 112 53.6
Manes.12G006250 Manihot esculenta HOM05D001044 ORTHO05D006993 6.0e-15 85.1 106 53.8
TPR.G30354 Trifolium pratense HOM05D001044 ORTHO05D006993 6.0e-15 85.1 109 46.8
MSTRG.327 Avicennia marina HOM05D001044 ORTHO05D006993 7.9e-15 84.7 116 54.3
PGSC0003DMG400016166 Solanum tuberosum HOM05D001044 ORTHO05D006993 7.9e-15 84.7 113 53.1
MSTRG.8214 Avicennia marina HOM05D001044 ORTHO05D006993 1.3e-14 84.0 122 49.2
arahy.Tifrunner.gnm1.ann1.5996BE Arachis hypogaea HOM05D001044 ORTHO05D006993 2.3e-14 83.2 93 54.8
Aqoxy2G04066 Aquilegia oxysepala HOM05D001044 ORTHO05D006993 3.0e-14 82.8 123 48.8
CSS0007646 Camellia sinensis var. sinensis HOM05D001044 ORTHO05D006993 3.9e-14 82.4 93 57.0
Nitab4.5_0001653g0130 Nicotiana tabacum HOM05D001044 ORTHO05D006993 3.9e-14 82.4 97 59.8
PSO675G0244 Papaver somniferum HOM05D001044 ORTHO05D010091 3.9e-14 82.4 128 49.2
DCAR_023853 Daucus carota HOM05D001044 ORTHO05D006993 5.1e-14 82.0 122 47.5
Lj1g0004654 Lotus japonicus HOM05D001044 ORTHO05D006993 5.1e-14 82.0 110 49.1
GSVIVG01019117001 Vitis vinifera HOM05D001044 ORTHO05D006993 5.1e-14 82.0 97 57.7
Nitab4.5_0006595g0020 Nicotiana tabacum HOM05D001044 ORTHO05D006993 6.7e-14 81.6 97 57.7
arahy.Tifrunner.gnm1.ann1.MJZV2I Arachis hypogaea HOM05D001044 ORTHO05D006993 1.1e-13 80.9 93 53.8
unitig_26.g9569 Utricularia gibba HOM05D001044 ORTHO05D006993 1.1e-13 80.9 62 74.2
PSO017G2931 Papaver somniferum HOM05D001044 ORTHO05D006993 1.5e-13 80.5 133 48.1
SGA_v2.0_scaffold62G21506 Striga asiatica HOM05D001044 ORTHO05D006993 1.5e-13 80.5 126 50.8
ATR1147G024 Amborella trichopoda HOM05D001044 ORTHO05D006993 2.5e-13 79.7 127 46.5
Nn1g09810 Nelumbo nucifera HOM05D001044 ORTHO05D006993 4.3e-13 79.0 74 64.9
CDE05G0882 Ceratophyllum demersum HOM05D001044 ORTHO05D006993 5.7e-13 78.6 112 50.0
unitig_749.g13504 Utricularia gibba HOM05D001044 ORTHO05D006993 5.7e-13 78.6 62 71.0
Os08g0528500 Oryza sativa ssp. japonica HOM05D001044 ORTHO05D006993 1.6e-12 77.0 64 70.3
CDE05G0724 Ceratophyllum demersum HOM05D001044 ORTHO05D006993 3.7e-12 75.9 111 46.8
C08p15320 Brassica napus HOM05D001044 ORTHO05D015489 6.3e-12 75.1 67 65.7
A07p13580 Brassica napus HOM05D001044 ORTHO05D015489 8.2e-12 74.7 61 70.5
SEGI_17978 Sequoiadendron giganteum HOM05D001044 ORTHO05D006993 1.4e-11 73.9 57 73.7
SEGI_37828 Sequoiadendron giganteum HOM05D001044 ORTHO05D006993 1.4e-11 73.9 57 73.7
Lsat_1_v5_gn_2_106141 Lactuca sativa HOM05D001044 ORTHO05D006993 2.4e-11 73.2 60 71.7
Lsat_1_v5_gn_5_162860 Lactuca sativa HOM05D001044 ORTHO05D006993 2.4e-11 73.2 60 71.7
Lsat_1_v5_gn_8_55881 Lactuca sativa HOM05D001044 ORTHO05D006993 2.4e-11 73.2 60 71.7
HPP92_020207 Vanilla planifolia HOM05D001044 ORTHO05D006993 6.9e-11 71.6 101 48.5
Zm00001eb036320 Zea mays HOM05D001044 ORTHO05D006993 9.0e-11 71.2 54 74.1
SMO367G1059 Selaginella moellendorffii HOM05D001044 ORTHO05D006993 2.6e-10 69.7 53 73.6
Solyc09g015440.1 Solanum lycopersicum HOM05D001044 ORTHO05D006993 5.9e-10 68.6 96 54.2
Pp3c24_6730 Physcomitrium patens HOM05D001044 ORTHO05D006993 1.0e-09 67.8 54 72.2
Pp3c8_14760 Physcomitrium patens HOM05D001044 ORTHO05D006993 5.0e-09 65.5 91 50.5
Mapoly0030s0088 Marchantia polymorpha HOM05D001044 ORTHO05D006993 1.9e-08 63.5 52 69.2
PRCOL_00006182 Prasinoderma coloniale HOM05D001044 ORTHO05D006993 1.2e-07 60.8 47 70.2
HPP92_020218 Vanilla planifolia HOM05D001044 ORTHO05D006993 1.2e-07 60.8 45 77.8
MCO03G382 Micromonas commoda HOM05D001044 ORTHO05D006993 3.6e-07 59.3 49 67.3
Cfa026150 Carpinus fangiana HOM05D001044 ORTHO05D006993 7.9e-07 58.2 57 56.1
Actinidia38901 Actinidia chinensis HOM05D001044 ORTHO05D006993 1.0e-06 57.8 84 50.0
AUR62000318 Chenopodium quinoa HOM05D000795 ORTHO05D000706 5.1e-06 55.5 72 54.2
AUR62006663 Chenopodium quinoa HOM05D000795 ORTHO05D006993 6.7e-06 55.1 101 45.5
CBR_g36743 Chara braunii HOM05D001044 ORTHO05D006993 8.8e-06 54.7 34 73.5


User provided reference genes

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