Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 5.7e-136 487.6 259 100.0
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 5.7e-136 487.6 259 100.0
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 5.7e-136 487.6 259 100.0
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 1.4e-118 429.9 259 91.5
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 4.1e-118 428.3 259 91.1
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 1.7e-111 406.4 264 84.5
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 8.4e-95 350.9 252 78.2
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 2.3e-92 342.8 249 77.1
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 5.3e-89 331.6 244 76.6
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 1.5e-88 330.1 260 75.0
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 2.4e-86 322.8 263 71.9
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.3e-76 289.7 244 70.9
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 2.1e-66 256.5 256 62.9
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 7.9e-61 238.0 300 52.7
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 1.5e-56 223.8 248 56.0
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 4.5e-56 222.2 246 54.9
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 4.5e-56 222.2 207 63.8
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.0e-55 221.1 208 61.1
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 1.3e-55 220.7 246 54.9
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.3e-55 220.7 246 54.9
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.3e-55 220.7 246 54.9
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 2.2e-55 219.9 186 68.3
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 1.9e-54 216.9 186 67.2
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 3.2e-54 216.1 247 57.1
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 5.5e-54 215.3 269 52.8
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 7.2e-54 214.9 268 51.9
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 9.4e-54 214.5 269 52.4
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 1.2e-53 214.2 156 76.3
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.2e-53 214.2 277 55.2
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 1.2e-53 214.2 189 66.1
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 1.2e-53 214.2 278 48.9
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.2e-53 214.2 264 52.3
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 2.1e-53 213.4 185 67.6
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 2.7e-53 213.0 271 52.8
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.6e-53 212.2 269 49.8
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.6e-53 212.2 269 49.8
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 7.9e-53 211.5 249 54.6
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.0e-52 211.1 208 62.0
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 1.8e-52 210.3 189 65.6
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.8e-52 210.3 207 59.4
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 2.3e-52 209.9 248 53.6
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 2.3e-52 209.9 182 65.9
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 3.0e-52 209.5 218 62.8
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 3.0e-52 209.5 218 63.3
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 3.0e-52 209.5 182 66.5
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 6.7e-52 208.4 180 70.0
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 6.7e-52 208.4 268 51.5
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 1.1e-51 207.6 217 62.2
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 1.1e-51 207.6 246 54.9
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.5e-51 207.2 207 59.4
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 2.0e-51 206.8 248 55.6
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 2.5e-51 206.5 291 49.1
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 2.5e-51 206.5 184 65.8
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 3.3e-51 206.1 250 52.8
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 4.3e-51 205.7 249 51.8
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 5.7e-51 205.3 183 63.4
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 9.7e-51 204.5 271 49.4
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 4.8e-50 202.2 252 54.0
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 1.4e-49 200.7 207 60.9
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 1.4e-49 200.7 239 54.4
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.8e-49 200.3 251 54.2
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 3.1e-49 199.5 256 51.6
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 3.1e-49 199.5 251 55.0
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 5.3e-49 198.7 269 48.7
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 6.9e-49 198.4 269 53.2
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.5e-48 197.2 269 49.8
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 2.0e-48 196.8 181 63.5
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.5e-48 195.7 269 50.6
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 7.7e-48 194.9 254 51.2
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.3e-47 194.1 209 60.3
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 1.7e-47 193.7 181 61.9
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 5.0e-47 192.2 183 61.7
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 5.0e-47 192.2 248 52.4
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 6.5e-47 191.8 239 54.0
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 8.5e-47 191.4 256 52.3
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 1.1e-46 191.0 219 55.3
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 1.9e-46 190.3 302 45.4
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 2.5e-46 189.9 184 63.0
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 5.5e-46 188.7 232 50.4
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 2.1e-45 186.8 221 57.9
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.1e-45 186.8 201 58.2
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 3.6e-45 186.0 248 50.8
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 3.6e-45 186.0 257 49.8
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 6.1e-45 185.3 240 50.8
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 1.0e-44 184.5 186 58.6
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.8e-44 183.7 254 50.0
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 3.9e-44 182.6 262 46.9
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.5e-43 180.6 276 44.9
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 2.6e-43 179.9 200 55.5
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 2.6e-43 179.9 273 45.8
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 2.8e-42 176.4 223 49.8
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 3.7e-42 176.0 187 59.9
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 1.4e-41 174.1 217 53.0
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 1.8e-41 173.7 273 43.6
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 5.3e-41 172.2 213 51.6
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 7.7e-40 168.3 220 49.5
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 8.5e-39 164.9 181 56.4
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 8.5e-39 164.9 182 57.7
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 2.5e-38 163.3 221 48.4
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 3.6e-37 159.5 180 55.0
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 6.1e-37 158.7 190 54.7
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.4e-36 157.5 235 45.5
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 3.9e-36 156.0 183 55.2
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 6.7e-36 155.2 211 49.3
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 3.3e-35 152.9 199 51.3
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 2.8e-34 149.8 159 58.5
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 3.7e-34 149.4 192 52.1
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 3.7e-34 149.4 191 51.8
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 1.1e-33 147.9 179 52.0
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.8e-33 147.1 191 51.3
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 5.3e-33 145.6 156 57.1
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 7.0e-33 145.2 220 46.8
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 1.7e-31 140.6 423 32.9
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 1.6e-29 134.0 207 45.4
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 2.1e-29 133.7 135 57.8
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.0e-28 131.3 184 46.7
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.1e-25 119.8 183 45.9
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 4.1e-25 119.4 259 39.8
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 5.3e-25 119.0 179 48.6
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 6.1e-21 105.5 210 39.5
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 5.7e-19 99.0 220 40.9
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 4.5e-16 89.4 135 48.9
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.0e-15 88.2 248 35.5
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 1.0e-15 88.2 121 47.9
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 3.6e-13 79.7 156 41.0
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 6.1e-13 79.0 53 73.6
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 5.2e-12 75.9 138 37.7
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 1.2e-11 74.7 76 55.3
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 5.7e-11 72.4 52 84.6
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 8.3e-10 68.6 59 62.7
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 1.8e-09 67.4 75 53.3
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 3.2e-09 66.6 45 86.7
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 2.7e-08 63.5 45 77.8


User provided reference genes

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