Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.4e-93 346.3 179 100.0
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.4e-93 346.3 179 100.0
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-93 346.3 179 100.0
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 9.2e-93 343.6 179 99.4
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-88 329.7 179 95.5
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 7.6e-87 323.9 180 94.4
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 7.1e-77 290.8 179 87.2
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 2.8e-73 278.9 179 79.9
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 5.8e-71 271.2 178 77.5
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.0e-59 233.8 180 69.4
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 9.6e-58 227.3 180 67.2
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.8e-56 223.0 176 65.9
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 4.0e-56 221.9 165 67.3
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.3e-54 216.9 178 68.0
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.4e-53 213.4 177 62.7
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 5.5e-53 211.5 174 62.1
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 5.5e-53 211.5 177 62.1
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.2e-52 210.3 176 61.4
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.3e-51 206.8 182 68.1
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 3.0e-51 205.7 176 60.8
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 3.0e-51 205.7 176 60.8
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.9e-51 205.3 179 64.8
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 2.5e-50 202.6 177 60.5
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 2.5e-50 202.6 177 60.5
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 4.8e-49 198.4 175 58.3
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.8e-48 196.4 182 58.8
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.8e-48 196.4 176 59.7
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 4.1e-48 195.3 176 59.1
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 5.3e-48 194.9 176 59.1
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 2.0e-47 193.0 175 57.7
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.0e-42 176.4 138 70.3
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 1.7e-41 173.3 173 55.5
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.4e-40 170.2 139 68.3
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 8.8e-35 151.0 184 50.5
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 5.7e-34 148.3 189 46.0
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.4e-34 147.9 189 46.0
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.7e-34 147.5 189 46.0
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 6.3e-33 144.8 176 48.3
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.4e-32 143.7 189 47.6
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 2.4e-32 142.9 173 48.6
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 2.4e-32 142.9 170 47.6
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.2e-30 136.3 187 44.9
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.2e-30 136.3 186 45.2
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 3.8e-30 135.6 170 47.6
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.8e-30 135.6 188 41.5
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.9e-29 133.3 181 43.6
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.9e-29 133.3 202 38.6
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.5e-29 132.9 185 44.3
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.5e-29 132.9 175 43.4
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 3.2e-29 132.5 186 45.2
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 4.2e-29 132.1 163 44.2
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 7.2e-29 131.3 168 44.0
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 1.2e-28 130.6 182 44.0
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 1.2e-28 130.6 176 44.9
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 1.2e-28 130.6 181 43.6
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 2.1e-28 129.8 185 44.3
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.1e-28 129.8 176 43.2
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.6e-28 129.0 189 44.4
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.7e-28 128.6 179 43.0
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 8.0e-28 127.9 188 42.6
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.0e-27 127.5 183 42.6
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.8e-27 126.7 186 38.7
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 2.3e-27 126.3 181 42.5
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 3.0e-27 125.9 180 42.8
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.0e-27 125.9 189 43.9
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.9e-27 125.6 180 44.4
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 6.7e-27 124.8 198 38.9
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 8.8e-27 124.4 183 42.6
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.5e-26 123.6 192 42.7
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 1.5e-26 123.6 176 45.5
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.5e-26 123.6 176 45.5
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.5e-26 123.6 188 41.0
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.0e-26 123.2 176 47.7
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 5.7e-26 121.7 176 44.3
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.4e-26 121.3 187 41.2
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 7.4e-26 121.3 184 40.8
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 7.4e-26 121.3 164 47.0
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 9.7e-26 120.9 182 42.9
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 9.7e-26 120.9 171 43.9
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.7e-25 120.2 184 43.5
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.7e-25 120.2 187 42.2
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 2.8e-25 119.4 170 42.4
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.8e-25 119.4 171 40.4
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.8e-25 118.6 178 40.4
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 8.2e-25 117.9 175 45.7
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.1e-24 117.5 192 42.2
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.1e-24 117.5 189 39.7
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 1.4e-24 117.1 200 39.5
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 1.8e-24 116.7 176 47.2
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-24 116.7 175 41.1
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.8e-24 116.7 185 42.2
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 3.1e-24 115.9 174 46.0
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 3.1e-24 115.9 185 39.5
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 3.1e-24 115.9 177 43.5
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.1e-24 115.5 176 43.8
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 4.1e-24 115.5 189 37.0
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 5.3e-24 115.2 178 39.3
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 7.0e-24 114.8 207 36.2
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.2e-23 114.0 192 38.5
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 2.6e-23 112.8 169 44.4
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.6e-23 112.8 184 40.8
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 3.5e-23 112.5 172 41.3
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 4.5e-23 112.1 176 43.2
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.5e-23 112.1 193 35.2
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 7.7e-23 111.3 173 42.8
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-22 110.5 176 42.0
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-22 110.2 175 40.0
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 1.7e-22 110.2 172 39.0
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.7e-22 110.2 180 39.4
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.2e-22 109.8 196 35.7
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 2.9e-22 109.4 178 43.8
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 3.8e-22 109.0 184 40.2
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 3.8e-22 109.0 169 39.6
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 6.5e-22 108.2 179 39.7
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 6.5e-22 108.2 193 39.4
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.5e-22 107.8 196 39.8
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 8.5e-22 107.8 187 38.0
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 1.1e-21 107.5 180 37.8
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.1e-21 107.5 190 36.8
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 2.5e-21 106.3 184 40.2
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.2e-21 105.9 172 40.7
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 4.2e-21 105.5 215 35.8
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.2e-21 105.5 175 37.7
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.5e-21 105.1 161 42.9
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 9.4e-21 104.4 195 39.5
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 9.4e-21 104.4 167 41.3
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 9.4e-21 104.4 193 37.8
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.6e-20 103.6 197 40.6
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.6e-20 103.6 197 40.6
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-20 103.2 179 35.8
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 2.7e-20 102.8 168 39.9
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.7e-20 102.1 196 40.3
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 4.7e-20 102.1 176 38.1
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 1.4e-19 100.5 205 34.6
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.8e-19 100.1 157 43.9
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.5e-18 97.1 174 39.1
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 2.0e-18 96.7 215 33.5
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 2.6e-18 96.3 164 39.0
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 3.4e-18 95.9 181 37.0
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 4.4e-18 95.5 176 39.8
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-17 93.6 167 38.3
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 3.7e-17 92.4 178 36.0
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 3.7e-17 92.4 165 41.2
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 8.3e-17 91.3 173 34.1
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 1.4e-16 90.5 180 35.6
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-16 89.4 142 40.8
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 3.1e-16 89.4 168 38.1
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 4.1e-16 89.0 170 37.6
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-15 86.3 156 39.1
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.7e-15 84.7 151 39.1
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.3e-14 84.0 170 35.3
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.7e-14 83.6 181 34.3
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.2e-14 83.2 170 36.5
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.9e-13 80.1 162 38.9
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 3.2e-13 79.3 212 33.5
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.2e-12 77.4 151 35.1
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 3.6e-12 75.9 132 37.9
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 3.6e-12 75.9 169 32.5
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 6.1e-12 75.1 173 31.8
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 8.0e-12 74.7 204 32.8
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.3e-11 73.2 101 45.5
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 4.4e-10 68.9 210 31.0
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.4e-08 63.9 142 38.0
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-08 63.5 107 32.7
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-07 60.1 88 38.6
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.5e-07 58.9 90 36.7
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 4.5e-07 58.9 204 28.9
SEGI_22892 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 2.9e-06 56.2 172 30.8
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 3.8e-06 55.8 118 33.1


User provided reference genes

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