Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06761 Brassica carinata HOM05D006737 ORTHO05D008418 1.9e-178 629.0 312 100.0
C03p37890 Brassica napus HOM05D006737 ORTHO05D008418 5.2e-168 594.3 323 92.9
BolC3t16077H Brassica oleracea HOM05D006737 ORTHO05D008418 2.0e-167 592.4 322 92.5
A03p31080 Brassica napus HOM05D006737 ORTHO05D008418 4.6e-164 581.3 321 92.2
BraA03t12285Z Brassica rapa HOM05D006737 ORTHO05D008418 4.6e-164 581.3 321 92.2
BcaB01g02446 Brassica carinata HOM05D006737 ORTHO05D008418 9.9e-151 537.0 312 86.9
Thhalv10028823m.g Eutrema salsugineum HOM05D006737 ORTHO05D008418 1.1e-146 523.5 312 83.3
Sp6g02290 Schrenkiella parvula HOM05D006737 ORTHO05D008418 6.2e-145 517.7 313 83.7
AL6G50710 Arabidopsis lyrata HOM05D006737 ORTHO05D008418 5.5e-141 504.6 312 80.8
Carub.0006s3475 Capsella rubella HOM05D006737 ORTHO05D008418 9.0e-136 487.3 314 78.7
CARHR250600 Cardamine hirsuta HOM05D006737 ORTHO05D008418 1.1e-133 480.3 312 77.9
AT4G02405 Arabidopsis thaliana HOM05D006737 ORTHO05D008418 1.5e-122 443.4 290 77.9
Aa31LG5G2050 Aethionema arabicum HOM05D006737 ORTHO05D008418 1.8e-115 419.9 321 67.9
Atru.chr5.1140 Acer truncatum HOM05D006737 ORTHO05D008418 5.9e-95 351.7 288 59.7
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 3.8e-94 349.0 315 57.5
FAN15G3576 Fragaria x ananassa HOM05D006737 ORTHO05D008418 8.5e-94 347.8 312 57.1
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 1.1e-93 347.4 288 58.3
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 1.5e-93 347.1 311 55.9
FvH4_2g25800 Fragaria vesca HOM05D006737 ORTHO05D008418 1.9e-93 346.7 312 56.7
FAN24G1027 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.9e-93 346.7 312 56.7
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 1.9e-93 346.7 288 59.7
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 7.2e-93 344.7 316 56.0
RcHm_v2.0_Chr6g0294111 Rosa chinensis HOM05D006737 ORTHO05D008418 2.7e-92 342.8 309 55.3
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 4.7e-92 342.0 311 55.0
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 1.0e-91 340.9 315 56.8
FAN27G1696 Fragaria x ananassa HOM05D006737 ORTHO05D008418 8.8e-91 337.8 325 54.5
Manes.01G219800 Manihot esculenta HOM05D006737 ORTHO05D008418 2.6e-90 336.3 288 56.9
Eucgr.H01107 Eucalyptus grandis HOM05D006737 ORTHO05D008418 1.1e-88 330.9 306 55.2
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 1.8e-88 330.1 316 52.8
Cpa.g.sc9.256 Carica papaya HOM05D006737 ORTHO05D008418 2.4e-88 329.7 302 55.6
vmacro02447 Vaccinium macrocarpon HOM05D006737 ORTHO05D008418 3.5e-87 325.9 294 57.8
Gorai.008G144900 Gossypium raimondii HOM05D006737 ORTHO05D008418 5.9e-87 325.1 310 53.9
FAN20G1602 Fragaria x ananassa HOM05D006737 ORTHO05D008418 2.2e-86 323.2 307 54.4
Glyma.19G211400 Glycine max HOM05D006737 ORTHO05D008418 2.2e-86 323.2 287 56.4
Gohir.D12G133900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 3.8e-86 322.4 290 55.5
Gohir.A12G130100 Gossypium hirsutum HOM05D006737 ORTHO05D008418 5.0e-86 322.0 310 53.5
Nn3g21504 Nelumbo nucifera HOM05D006737 ORTHO05D008418 1.1e-85 320.9 299 55.5
CiPaw.07G109800 Carya illinoinensis HOM05D006737 ORTHO05D008418 1.5e-85 320.5 346 49.7
QL12p028401 Quercus lobata HOM05D006737 ORTHO05D008418 1.5e-85 320.5 290 55.2
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 1.9e-85 320.1 343 49.6
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 3.2e-85 319.3 316 51.6
Gohir.D08G085900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 1.2e-84 317.4 304 53.9
Gorai.004G090400 Gossypium raimondii HOM05D006737 ORTHO05D008418 2.1e-84 316.6 304 53.9
Phvul.001G207600 Phaseolus vulgaris HOM05D006737 ORTHO05D008418 2.1e-84 316.6 287 55.7
Gohir.A08G076400 Gossypium hirsutum HOM05D006737 ORTHO05D008418 3.6e-84 315.8 304 53.9
Lj6g0001904 Lotus japonicus HOM05D006737 ORTHO05D008418 6.1e-84 315.1 312 51.0
CSS0030900 Camellia sinensis var. sinensis HOM05D006737 ORTHO05D008418 8.0e-84 314.7 292 57.2
CANSAT25G2451 Cannabis sativa HOM05D006737 ORTHO05D008418 1.0e-83 314.3 314 51.6
CAN.G1209.24 Capsicum annuum HOM05D006737 ORTHO05D008418 3.0e-83 312.8 284 56.0
Sopen06g035940 Solanum pennellii HOM05D006737 ORTHO05D008418 3.0e-83 312.8 299 53.2
MBI19_g26092_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 4.0e-83 312.4 289 54.0
Lsat_1_v5_gn_8_164261 Lactuca sativa HOM05D006737 ORTHO05D008418 6.8e-83 311.6 325 50.2
Solyc06g084570.4 Solanum lycopersicum HOM05D006737 ORTHO05D008418 2.0e-82 310.1 303 52.8
MSTRG.12607 Avicennia marina HOM05D006737 ORTHO05D008418 7.5e-82 308.1 301 51.2
CiPaw.07G109600 Carya illinoinensis HOM05D006737 ORTHO05D008418 9.8e-82 307.8 259 58.3
PGR119G0152 Punica granatum HOM05D006737 ORTHO05D008418 2.2e-81 306.6 311 52.4
TAR365G0544 Trochodendron aralioides HOM05D006737 ORTHO05D008418 2.2e-81 306.6 292 54.5
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 6.3e-81 305.1 292 51.7
Rhsim13G0009900 Rhododendron simsii HOM05D006737 ORTHO05D008418 9.2e-80 301.2 300 53.3
Sabra02G0155300 Salix brachista HOM05D006737 ORTHO05D008418 9.2e-80 301.2 353 47.0
arahy.Tifrunner.gnm1.ann1.AY1VU4 Arachis hypogaea HOM05D006737 ORTHO05D008418 1.6e-79 300.4 310 50.0
Hund05430 Selenicereus undatus HOM05D006737 ORTHO05D008418 1.6e-79 300.4 285 53.3
AUR62025575 Chenopodium quinoa HOM05D006737 ORTHO05D008418 2.7e-79 299.7 288 52.1
ECA236G1530 Erigeron canadensis HOM05D006737 ORTHO05D008418 3.5e-79 299.3 286 53.5
AUR62008669 Chenopodium quinoa HOM05D006737 ORTHO05D008418 5.9e-79 298.5 286 51.0
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 1.0e-78 297.7 292 51.0
VMungo1383G2597 Vigna mungo HOM05D006737 ORTHO05D008418 2.3e-78 296.6 261 55.6
Sc05g0003760 Simmondsia chinensis HOM05D006737 ORTHO05D008418 1.1e-77 294.3 295 52.5
EL10Ac7g17513 Beta vulgaris HOM05D006737 ORTHO05D008418 1.5e-77 293.9 309 48.5
Aqoxy2G02933 Aquilegia oxysepala HOM05D006737 ORTHO05D008418 5.6e-77 292.0 301 50.5
Actinidia01489 Actinidia chinensis HOM05D006737 ORTHO05D008418 1.0e-75 287.7 233 61.4
Peaxi162Scf00140g01213 Petunia axillaris HOM05D006737 ORTHO05D008418 1.0e-75 287.7 262 55.0
ClCG01G014930 Citrullus lanatus HOM05D006737 ORTHO05D008418 2.3e-75 286.6 310 49.7
Lalb_Chr02g0146391 Lupinus albus HOM05D006737 ORTHO05D008418 2.3e-75 286.6 260 53.5
Nitab4.5_0004367g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 4.0e-75 285.8 334 47.0
arahy.Tifrunner.gnm1.ann1.B4PCIP Arachis hypogaea HOM05D006737 ORTHO05D008418 8.9e-75 284.6 335 45.7
Duzib138G1512 Durio zibethinus HOM05D006737 ORTHO05D008418 8.9e-75 284.6 250 55.6
SalBow2G2271 Salvia bowleyana HOM05D006737 ORTHO05D008418 1.5e-74 283.9 259 51.4
Migut.O00484 Erythranthe guttata HOM05D006737 ORTHO05D008418 4.4e-74 282.3 283 52.3
Hma1.2p1_0491F.1_g164620 Hydrangea macrophylla HOM05D006737 ORTHO05D008418 5.7e-74 282.0 267 52.8
Migut.N01508 Erythranthe guttata HOM05D006737 ORTHO05D008418 9.8e-74 281.2 283 51.9
MBI19_g25361_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 1.3e-73 280.8 333 46.8
Cc01_g20900 Coffea canephora HOM05D006737 ORTHO05D008418 1.7e-73 280.4 289 51.9
CsaV3_6G041030 Cucumis sativus L. HOM05D006737 ORTHO05D008418 2.2e-73 280.0 311 48.2
MELO3C024580.2 Cucumis melo HOM05D006737 ORTHO05D008418 2.9e-73 279.6 310 48.1
Migut.J01135 Erythranthe guttata HOM05D006737 ORTHO05D008418 8.3e-73 278.1 281 51.2
SGA_v2.0_scaffold198G41142 Striga asiatica HOM05D006737 ORTHO05D008418 2.4e-72 276.6 300 47.0
HanXRQChr04g0114161 Helianthus annuus HOM05D006737 ORTHO05D008418 2.0e-71 273.5 295 47.5
DCAR_002840 Daucus carota HOM05D006737 ORTHO05D008418 2.7e-71 273.1 310 49.0
CDE01G0235 Ceratophyllum demersum HOM05D006737 ORTHO05D008418 5.0e-70 268.9 291 49.5
Oeu048335.1 Olea europaea HOM05D006737 ORTHO05D008418 3.3e-69 266.2 234 54.3
COL.COLO4_23338 Corchorus olitorius HOM05D006737 ORTHO05D008418 6.2e-68 261.9 211 61.1
Os07g0247100 Oryza sativa ssp. japonica HOM05D006737 ORTHO05D008418 1.3e-62 244.2 292 44.9
Zm00001eb097030 Zea mays HOM05D006737 ORTHO05D008418 6.6e-62 241.9 289 43.9
Lj2A1195G25 Lonicera japonica HOM05D006737 ORTHO05D008418 4.0e-59 232.6 270 46.3
Sed0017513 Sechium edule HOM05D006737 ORTHO05D008418 1.0e-54 218.0 238 47.5
Pp3c24_12380 Physcomitrium patens HOM05D006737 ORTHO05D008418 1.7e-46 190.7 315 38.4
Dinv33057 Davidia involucrata HOM05D006737 ORTHO05D008418 7.8e-39 165.2 141 60.3
Oeu010666.1 Olea europaea HOM05D006737 ORTHO05D008418 1.7e-38 164.1 135 54.1
PGSC0003DMG400024036 Solanum tuberosum HOM05D006737 ORTHO05D008418 8.4e-33 145.2 139 51.1
BcaB01g02447 Brassica carinata HOM05D006737 ORTHO05D008418 1.2e-31 141.4 91 75.8
Nitab4.5_0002820g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 8.7e-30 135.2 140 50.0
Mapoly0132s0018 Marchantia polymorpha HOM05D006737 ORTHO05D008418 1.5e-29 134.4 231 32.9
BcaB01g02050 Brassica carinata HOM05D006737 ORTHO05D008418 3.3e-29 133.3 97 75.3
VMungo1383G3174 Vigna mungo HOM05D006737 ORTHO05D008418 1.0e-22 111.7 254 31.9
arahy.Tifrunner.gnm1.ann1.MB1A81 Arachis hypogaea HOM05D006737 ORTHO05D008418 3.9e-22 109.8 125 47.2
SEGI_39136 Sequoiadendron giganteum HOM05D006737 ORTHO05D008418 2.5e-16 90.5 138 37.0
arahy.Tifrunner.gnm1.ann1.MU6BTE Arachis hypogaea HOM05D006737 ORTHO05D008418 4.6e-15 86.3 113 41.6
Dinv31287 Davidia involucrata HOM05D006737 ORTHO05D008418 5.5e-08 62.8 99 40.4
Dinv07247 Davidia involucrata HOM05D006737 ORTHO05D008418 1.6e-07 61.2 99 39.4
MCO02G241 Micromonas commoda HOM05D006737 ORTHO05D008418 6.1e-07 59.3 214 23.8
Dinv17961 Davidia involucrata HOM05D006737 ORTHO05D008418 8.7e-06 55.5 88 36.4


User provided reference genes

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