Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 7.6e-40 166.8 88 100.0
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 1.4e-22 109.4 58 86.2
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 5.5e-22 107.5 61 80.3
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 7.1e-22 107.1 58 84.5
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 1.2e-21 106.3 57 86.0
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 2.3e-20 102.1 57 84.2
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 5.1e-20 100.9 58 81.0
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 8.7e-20 100.1 54 88.9
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 5.7e-19 97.4 57 77.2
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.6e-18 95.9 57 78.9
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 2.8e-18 95.1 57 78.9
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 2.8e-18 95.1 57 78.9
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 3.7e-18 94.7 57 78.9
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 6.3e-18 94.0 52 82.7
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 6.3e-18 94.0 52 82.7
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 9.0e-17 90.1 58 74.1
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 2.6e-16 88.6 58 72.4
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.0e-15 86.7 46 89.1
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 1.0e-15 86.7 46 89.1
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.0e-15 86.7 46 89.1
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 2.2e-15 85.5 45 91.1
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 6.5e-15 84.0 46 87.0
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 6.5e-15 84.0 46 87.0
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 3.9e-12 74.7 45 75.6
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 6.7e-12 73.9 53 64.2
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 8.8e-12 73.6 57 59.6
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 2.5e-11 72.0 49 69.4
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 3.3e-11 71.6 51 62.7
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 5.7e-11 70.9 54 63.0
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 5.7e-11 70.9 48 66.7
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 5.7e-11 70.9 50 68.0
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 7.4e-11 70.5 45 71.1
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 9.7e-11 70.1 54 57.4
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.7e-11 70.1 45 68.9
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.3e-10 69.7 45 71.1
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 1.3e-10 69.7 46 67.4
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 1.7e-10 69.3 46 67.4
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.7e-10 69.3 46 67.4
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.7e-10 69.3 46 67.4
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.7e-10 69.3 46 67.4
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.7e-10 69.3 45 71.1
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.7e-10 69.3 50 64.0
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 1.7e-10 69.3 44 70.5
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 2.2e-10 68.9 50 60.0
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 2.2e-10 68.9 44 70.5
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 2.2e-10 68.9 49 63.3
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 2.2e-10 68.9 41 73.2
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 2.8e-10 68.6 50 60.0
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 2.8e-10 68.6 46 69.6
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 2.8e-10 68.6 48 64.6
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.8e-10 68.6 44 68.2
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.8e-10 68.6 44 68.2
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 3.7e-10 68.2 51 60.8
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.7e-10 68.2 45 71.1
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.7e-10 68.2 45 71.1
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.7e-10 68.2 45 71.1
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 3.7e-10 68.2 52 63.5
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 4.8e-10 67.8 46 65.2
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 4.8e-10 67.8 44 70.5
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 4.8e-10 67.8 45 66.7
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 6.3e-10 67.4 49 61.2
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 6.3e-10 67.4 48 70.8
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 6.3e-10 67.4 47 66.0
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.3e-10 67.4 46 65.2
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 6.3e-10 67.4 45 68.9
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 8.2e-10 67.0 46 65.2
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 8.2e-10 67.0 58 62.1
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 8.2e-10 67.0 48 60.4
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.1e-09 66.6 56 57.1
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.1e-09 66.6 44 68.2
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.1e-09 66.6 56 57.1
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 1.4e-09 66.2 50 58.0
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.4e-09 66.2 48 64.6
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.4e-09 66.2 44 65.9
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.4e-09 66.2 40 75.0
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.4e-09 66.2 46 63.0
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.4e-09 66.2 46 63.0
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.8e-09 65.9 57 56.1
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.8e-09 65.9 52 65.4
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.8e-09 65.9 41 73.2
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 1.8e-09 65.9 45 64.4
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.8e-09 65.9 48 58.3
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.8e-09 65.9 49 59.2
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 2.4e-09 65.5 57 61.4
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 2.4e-09 65.5 61 54.1
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 2.4e-09 65.5 42 71.4
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 2.4e-09 65.5 42 71.4
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 2.4e-09 65.5 41 70.7
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 2.4e-09 65.5 48 60.4
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 2.4e-09 65.5 48 60.4
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 3.1e-09 65.1 48 62.5
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 3.1e-09 65.1 47 61.7
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 4.1e-09 64.7 48 60.4
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 4.1e-09 64.7 38 73.7
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 4.1e-09 64.7 40 72.5
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 4.1e-09 64.7 62 56.5
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 4.1e-09 64.7 52 57.7
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 5.3e-09 64.3 41 70.7
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 5.3e-09 64.3 44 65.9
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 6.9e-09 63.9 54 51.9
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 6.9e-09 63.9 52 61.5
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 6.9e-09 63.9 47 59.6
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 9.1e-09 63.5 42 64.3
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 9.1e-09 63.5 44 63.6
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 9.1e-09 63.5 43 65.1
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 9.1e-09 63.5 47 59.6
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 9.1e-09 63.5 48 58.3
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 9.1e-09 63.5 45 71.1
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 1.2e-08 63.2 55 47.3
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 1.2e-08 63.2 44 61.4
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.2e-08 63.2 45 60.0
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 1.2e-08 63.2 44 65.9
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.5e-08 62.8 40 72.5
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.5e-08 62.8 45 60.0
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.5e-08 62.8 39 69.2
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.5e-08 62.8 39 69.2
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.5e-08 62.8 39 69.2
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 2.0e-08 62.4 49 61.2
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.0e-08 62.4 45 62.2
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.0e-08 62.4 45 62.2
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 2.0e-08 62.4 45 60.0
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 2.0e-08 62.4 45 60.0
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.6e-08 62.0 47 68.1
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 2.6e-08 62.0 44 63.6
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.6e-08 62.0 46 65.2
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.6e-08 62.0 45 66.7
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 2.6e-08 62.0 45 66.7
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 3.4e-08 61.6 45 60.0
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 3.4e-08 61.6 49 65.3
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 3.4e-08 61.6 45 57.8
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 3.4e-08 61.6 52 63.5
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 3.4e-08 61.6 47 61.7
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 3.4e-08 61.6 47 61.7
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 4.5e-08 61.2 38 68.4
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 4.5e-08 61.2 41 70.7
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 4.5e-08 61.2 41 70.7
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 4.5e-08 61.2 36 75.0
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 4.5e-08 61.2 44 59.1
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 4.5e-08 61.2 36 75.0
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 5.9e-08 60.8 73 46.6
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 5.9e-08 60.8 42 64.3
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 5.9e-08 60.8 45 62.2
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.0e-07 60.1 45 60.0
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 1.0e-07 60.1 45 60.0
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.0e-07 60.1 44 61.4
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 1.0e-07 60.1 47 59.6
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 1.3e-07 59.7 56 51.8
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.7e-07 59.3 41 68.3
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 1.1e-06 56.6 41 65.9
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.1e-06 56.6 42 59.5
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 1.4e-06 56.2 42 66.7
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 1.9e-06 55.8 41 65.9


User provided reference genes

Program Settings