Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 3.9e-193 677.9 340 100.0
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 5.0e-63 245.7 123 99.2
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 4.5e-48 196.1 129 82.9
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.2e-46 189.9 429 34.0
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 7.7e-40 168.7 152 56.6
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 5.9e-32 142.5 366 33.3
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.6e-23 112.1 377 28.1
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.3e-22 110.2 216 38.9
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 7.5e-19 99.0 192 37.0
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 4.9e-18 96.3 204 39.7
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.9e-18 96.3 156 41.7
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.3e-18 95.5 463 25.9
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 1.1e-17 95.1 194 36.1
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.2e-17 93.6 463 26.3
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 1.6e-16 91.3 119 45.4
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.6e-16 89.7 104 44.2
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.6e-16 89.7 165 36.4
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 6.0e-16 89.4 159 37.1
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 7.8e-16 89.0 159 37.1
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 7.8e-16 89.0 114 41.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.0e-15 88.6 159 35.8
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.3e-15 88.2 101 45.5
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-15 88.2 159 36.5
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.3e-15 88.2 104 44.2
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.3e-15 88.2 104 43.3
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 1.7e-15 87.8 118 44.1
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.7e-15 87.8 100 44.0
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 2.3e-15 87.4 115 43.5
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 2.3e-15 87.4 159 35.8
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 2.3e-15 87.4 115 43.5
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 2.3e-15 87.4 104 41.3
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 3.0e-15 87.0 110 41.8
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 3.0e-15 87.0 112 42.0
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 5.0e-15 86.3 112 42.0
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 6.6e-15 85.9 149 36.2
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 8.6e-15 85.5 104 41.3
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 8.6e-15 85.5 100 43.0
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.1e-14 85.1 142 38.7
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 1.1e-14 85.1 157 37.6
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.1e-14 85.1 104 42.3
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 1.1e-14 85.1 104 42.3
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.5e-14 84.7 157 34.4
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.5e-14 84.7 149 38.9
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.5e-14 84.7 116 44.0
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.5e-14 84.7 104 42.3
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.5e-14 84.7 104 43.3
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.9e-14 84.3 104 41.3
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.9e-14 84.3 387 27.6
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-14 84.0 116 44.0
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 2.5e-14 84.0 159 33.3
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.5e-14 84.0 104 41.3
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.3e-14 83.2 121 39.7
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 4.3e-14 83.2 104 42.3
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 4.3e-14 83.2 104 42.3
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 4.3e-14 83.2 104 41.3
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 4.3e-14 83.2 104 41.3
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 4.3e-14 83.2 104 41.3
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 5.6e-14 82.8 138 37.0
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 5.6e-14 82.8 138 37.0
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 5.6e-14 82.8 104 41.3
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.6e-14 82.8 104 41.3
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.6e-14 82.8 104 41.3
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.6e-14 82.8 104 41.3
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 5.6e-14 82.8 100 43.0
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 5.6e-14 82.8 104 41.3
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.3e-14 82.4 104 41.3
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 7.3e-14 82.4 178 35.4
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 7.3e-14 82.4 100 43.0
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 7.3e-14 82.4 112 41.1
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 9.5e-14 82.0 116 43.1
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 9.5e-14 82.0 116 43.1
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 9.5e-14 82.0 109 39.4
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 9.5e-14 82.0 100 42.0
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 1.2e-13 81.6 104 39.4
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.2e-13 81.6 110 38.2
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.2e-13 81.6 104 41.3
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.6e-13 81.3 100 42.0
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.6e-13 81.3 104 40.4
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.6e-13 81.3 104 40.4
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.6e-13 81.3 104 40.4
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 2.1e-13 80.9 114 37.7
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 2.1e-13 80.9 110 38.2
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 2.1e-13 80.9 124 35.5
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 2.1e-13 80.9 100 41.0
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 2.1e-13 80.9 100 42.0
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 2.1e-13 80.9 100 40.0
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.1e-13 80.9 104 43.3
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.8e-13 80.5 155 37.4
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.8e-13 80.5 116 37.1
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 3.6e-13 80.1 127 38.6
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 3.6e-13 80.1 124 35.5
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 4.7e-13 79.7 100 41.0
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 4.7e-13 79.7 100 40.0
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 4.7e-13 79.7 104 39.4
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 4.7e-13 79.7 100 42.0
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 6.2e-13 79.3 138 36.2
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 6.2e-13 79.3 100 41.0
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 8.1e-13 79.0 100 41.0
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 8.1e-13 79.0 127 37.8
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 8.1e-13 79.0 100 41.0
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 8.1e-13 79.0 100 40.0
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 8.1e-13 79.0 114 38.6
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 1.1e-12 78.6 115 38.3
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.1e-12 78.6 101 40.6
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 1.4e-12 78.2 100 41.0
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 1.4e-12 78.2 100 40.0
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.4e-12 78.2 114 38.6
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 3.1e-12 77.0 112 37.5
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.0e-12 76.6 143 34.3
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 5.2e-12 76.3 112 39.3
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.8e-12 75.9 104 38.5
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 6.8e-12 75.9 113 40.7
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 6.8e-12 75.9 101 40.6
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 8.9e-12 75.5 143 34.3
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.2e-11 75.1 105 39.0
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 1.5e-11 74.7 142 34.5
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 2.0e-11 74.3 141 33.3
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.6e-11 73.9 92 48.9
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 3.4e-11 73.6 99 41.4
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 3.4e-11 73.6 104 38.5
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 4.4e-11 73.2 74 51.4
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 4.4e-11 73.2 92 40.2
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 5.8e-11 72.8 115 38.3
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 9.8e-11 72.0 93 41.9
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 9.8e-11 72.0 104 37.5
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.7e-10 71.2 104 38.5
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 2.2e-10 70.9 208 27.9
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.9e-10 70.5 119 40.3
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.9e-10 70.5 135 37.8
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 8.3e-10 68.9 80 42.5
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 4.1e-09 66.6 110 35.5
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 4.1e-09 66.6 113 35.4
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 3.5e-08 63.5 70 44.3
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 1.7e-07 61.2 97 40.2
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 2.3e-07 60.8 104 36.5
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 6.6e-07 59.3 69 43.5
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 3.3e-06 57.0 101 30.7


User provided reference genes

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