Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 1.3e-70 269.6 138 100.0
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 1.7e-41 172.9 135 75.6
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.8e-38 161.8 135 70.4
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.1e-37 160.2 135 70.4
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.9e-37 159.5 130 70.8
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 7.2e-37 157.5 130 70.0
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 7.2e-37 157.5 130 70.0
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 7.2e-37 157.5 130 70.0
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.0e-35 153.7 129 68.2
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.5e-34 149.8 135 64.4
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.6e-34 149.1 136 64.7
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 7.5e-34 147.5 134 62.7
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 8.3e-33 144.1 128 62.5
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.2e-23 113.6 129 60.5
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.6e-23 113.2 129 56.6
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 3.5e-23 112.1 129 59.7
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 3.5e-23 112.1 129 59.7
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 2.9e-22 109.0 129 59.7
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.6e-20 102.1 135 48.1
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 1.4e-19 100.1 122 59.0
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 8.9e-19 97.4 134 48.5
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 8.3e-17 90.9 126 49.2
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.4e-16 90.1 130 49.2
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.7e-15 85.9 128 42.2
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 3.5e-15 85.5 140 37.9
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.0e-14 84.0 134 43.3
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.0e-14 84.0 136 44.1
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 2.3e-14 82.8 129 39.5
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 2.3e-14 82.8 140 37.1
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 6.6e-14 81.3 134 41.0
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.5e-13 80.1 71 52.1
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 1.9e-13 79.7 132 43.9
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 1.9e-13 79.7 129 38.8
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.5e-13 79.3 140 37.1
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 2.5e-13 79.3 129 38.0
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 2.5e-13 79.3 140 36.4
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 3.3e-13 79.0 136 38.2
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 4.3e-13 78.6 132 43.2
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 7.3e-13 77.8 134 44.0
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 7.3e-13 77.8 136 37.5
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 7.3e-13 77.8 137 38.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 9.5e-13 77.4 129 36.4
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.2e-12 77.0 129 38.8
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.2e-12 77.0 136 39.0
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.1e-12 76.3 125 40.8
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 4.7e-12 75.1 137 35.8
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 4.7e-12 75.1 129 35.7
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 6.2e-12 74.7 115 42.6
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 8.1e-12 74.3 129 37.2
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 8.1e-12 74.3 135 37.8
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 1.1e-11 73.9 71 46.5
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.4e-11 73.6 140 32.1
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 2.3e-11 72.8 140 35.7
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.3e-11 72.8 124 37.9
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 2.3e-11 72.8 129 34.9
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 2.3e-11 72.8 120 39.2
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 5.2e-11 71.6 70 54.3
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 5.2e-11 71.6 124 37.9
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 5.2e-11 71.6 129 35.7
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 5.2e-11 71.6 129 35.7
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 6.8e-11 71.2 130 36.9
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 6.8e-11 71.2 71 46.5
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 6.8e-11 71.2 124 34.7
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 8.9e-11 70.9 70 48.6
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 8.9e-11 70.9 70 48.6
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 8.9e-11 70.9 125 38.4
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 8.9e-11 70.9 129 35.7
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.2e-10 70.5 136 37.5
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.2e-10 70.5 136 37.5
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.2e-10 70.5 71 46.5
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 1.2e-10 70.5 120 37.5
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 1.5e-10 70.1 138 36.2
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.5e-10 70.1 124 38.7
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 2.6e-10 69.3 126 36.5
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 2.6e-10 69.3 128 36.7
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 2.6e-10 69.3 129 37.2
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.6e-10 69.3 130 36.2
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 2.6e-10 69.3 71 46.5
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 3.4e-10 68.9 71 45.1
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 3.4e-10 68.9 114 37.7
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 5.8e-10 68.2 130 34.6
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 9.8e-10 67.4 136 36.0
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 9.8e-10 67.4 136 36.0
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 9.8e-10 67.4 71 45.1
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 9.8e-10 67.4 136 36.0
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.7e-09 66.6 143 32.9
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.7e-09 66.6 119 32.8
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.7e-09 66.6 127 36.2
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.7e-09 66.6 126 36.5
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 1.7e-09 66.6 120 35.8
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.7e-09 66.6 129 34.1
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 3.7e-09 65.5 71 45.1
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 4.9e-09 65.1 71 43.7
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 6.4e-09 64.7 136 35.3
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 8.3e-09 64.3 71 42.3
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 1.1e-08 63.9 126 35.7
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.4e-08 63.5 122 35.2
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.4e-08 63.5 129 33.3
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.9e-08 63.2 125 36.0
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.9e-08 63.2 144 31.9
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.9e-08 63.2 70 42.9
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.9e-08 63.2 129 34.1
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.4e-08 62.8 113 36.3
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.4e-08 62.8 113 36.3
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 4.1e-08 62.0 114 38.6
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 5.4e-08 61.6 136 33.1
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 5.4e-08 61.6 132 34.1
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 7.1e-08 61.2 125 36.0
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 9.2e-08 60.8 113 37.2
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.2e-07 60.5 128 28.9
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.6e-07 60.1 125 36.0
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.6e-07 60.1 70 47.1
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.6e-07 60.1 136 33.8
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.6e-07 60.1 126 36.5
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 2.1e-07 59.7 131 30.5
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 2.1e-07 59.7 71 40.8
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 2.1e-07 59.7 131 35.1
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 4.6e-07 58.5 69 42.0
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 4.6e-07 58.5 125 35.2
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 4.6e-07 58.5 71 42.3
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 6.0e-07 58.2 72 41.7
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 7.8e-07 57.8 71 39.4
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 7.8e-07 57.8 113 34.5
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 7.8e-07 57.8 136 31.6
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.3e-06 57.0 71 39.4
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.0e-06 55.8 70 44.3


User provided reference genes

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