Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 4.7e-123 444.5 220 100.0
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-111 406.0 228 90.8
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.4e-65 252.3 199 66.3
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 3.3e-60 235.7 210 62.4
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 1.7e-56 223.4 218 56.9
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 5.0e-56 221.9 169 62.7
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-52 210.7 247 52.2
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.1e-52 210.7 209 53.1
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.6e-52 209.5 212 56.6
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 4.1e-50 202.2 200 57.5
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 5.9e-41 171.8 233 48.9
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 1.1e-39 167.5 201 54.2
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.4e-36 155.6 122 61.5
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 2.0e-33 146.7 220 43.6
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.1e-31 141.0 214 44.4
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.5e-31 138.7 208 44.2
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 2.3e-29 133.3 73 84.9
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.1e-26 124.4 159 47.2
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-25 120.6 205 40.0
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.7e-25 119.8 173 41.0
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.8e-25 118.2 159 41.5
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.0e-24 117.9 206 39.8
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 1.0e-24 117.9 199 39.2
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 1.7e-24 117.1 156 46.8
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 2.9e-24 116.3 214 37.9
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 6.6e-24 115.2 157 43.9
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.6e-24 114.8 159 44.0
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 4.3e-23 112.5 179 41.3
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 4.3e-23 112.5 179 41.3
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 7.3e-23 111.7 158 41.1
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 9.5e-23 111.3 156 43.6
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 9.5e-23 111.3 173 38.7
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 9.5e-23 111.3 159 40.9
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 9.5e-23 111.3 159 40.9
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-22 110.5 161 42.9
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.1e-22 110.2 165 43.0
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 3.6e-22 109.4 159 40.3
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 4.7e-22 109.0 177 39.0
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 6.1e-22 108.6 159 42.1
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 6.1e-22 108.6 159 40.3
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 1.0e-21 107.8 158 41.1
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.4e-21 107.5 158 40.5
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.8e-21 107.1 198 38.9
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-21 107.1 155 41.9
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-21 106.7 158 40.5
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 8.9e-21 104.8 218 34.9
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-20 104.0 178 38.2
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 2.0e-20 103.6 157 40.1
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 3.4e-20 102.8 157 40.1
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 4.4e-20 102.4 162 40.7
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 4.4e-20 102.4 162 40.7
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 4.4e-20 102.4 159 42.1
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 4.4e-20 102.4 158 39.9
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 5.7e-20 102.1 161 41.6
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 5.7e-20 102.1 161 39.1
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 7.5e-20 101.7 156 39.7
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 7.5e-20 101.7 157 39.5
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 7.5e-20 101.7 168 38.7
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 9.8e-20 101.3 141 43.3
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 1.7e-19 100.5 207 34.3
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.2e-19 100.1 178 36.0
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 2.2e-19 100.1 223 35.0
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 2.9e-19 99.8 161 38.5
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 2.9e-19 99.8 210 35.7
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 3.7e-19 99.4 162 39.5
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 4.9e-19 99.0 214 37.9
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 6.4e-19 98.6 165 40.0
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 6.4e-19 98.6 165 37.6
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 6.4e-19 98.6 168 37.5
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 6.4e-19 98.6 221 38.0
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.3e-19 98.2 190 34.7
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 8.3e-19 98.2 178 36.0
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-18 97.8 161 39.1
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-18 97.8 161 39.1
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.1e-18 97.8 220 34.5
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.8e-18 97.1 188 34.6
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 1.8e-18 97.1 190 35.3
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.4e-18 96.7 155 40.6
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.4e-18 96.7 155 40.6
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.2e-18 96.3 135 37.8
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-18 95.9 192 35.4
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-18 95.9 192 35.4
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.4e-18 95.5 206 37.4
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 5.4e-18 95.5 156 39.7
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 5.4e-18 95.5 204 36.8
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 5.4e-18 95.5 193 37.3
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 5.4e-18 95.5 193 37.3
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 7.0e-18 95.1 197 36.5
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 9.2e-18 94.7 213 38.5
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 9.2e-18 94.7 203 36.9
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 9.2e-18 94.7 173 37.6
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.2e-17 94.4 215 31.2
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-17 93.6 166 38.6
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 2.0e-17 93.6 158 39.9
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 2.0e-17 93.6 158 39.9
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 5.9e-17 92.0 172 37.2
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 5.9e-17 92.0 187 38.0
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.8e-17 91.7 166 38.0
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 7.8e-17 91.7 184 37.0
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.0e-16 91.3 175 34.3
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.0e-16 91.3 177 34.5
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.3e-16 90.9 206 33.5
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.7e-16 90.5 159 35.2
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-16 90.1 223 32.7
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.3e-16 90.1 159 35.2
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.0e-16 89.7 162 33.3
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.0e-16 89.7 227 33.9
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 5.0e-16 89.0 160 38.1
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 6.6e-16 88.6 160 38.1
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 6.6e-16 88.6 160 38.1
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 8.6e-16 88.2 163 38.0
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.5e-15 87.4 177 33.9
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.9e-15 87.0 189 32.3
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 1.9e-15 87.0 160 37.5
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.5e-15 86.7 173 39.9
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.3e-15 86.3 191 36.6
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.6e-15 85.5 163 33.1
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.6e-15 85.5 192 36.5
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 5.6e-15 85.5 193 34.2
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 5.6e-15 85.5 194 33.5
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.5e-15 84.7 185 30.3
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.2e-14 84.3 175 33.7
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 2.1e-14 83.6 163 36.2
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.1e-14 83.6 177 32.8
THA.LOC104801562 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.1e-14 83.6 176 35.2
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.8e-14 83.2 160 35.0
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.6e-14 82.8 220 32.3
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.6e-14 82.8 220 32.3
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 4.7e-14 82.4 150 38.0
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 1.0e-13 81.3 160 35.6
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 1.4e-13 80.9 148 36.5
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 1.4e-13 80.9 173 32.9
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.8e-13 80.5 153 34.0
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.3e-13 80.1 159 30.2
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 2.3e-13 80.1 160 35.6
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 2.3e-13 80.1 148 36.5
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.1e-13 79.7 153 32.0
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 3.1e-13 79.7 187 34.2
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 5.2e-13 79.0 169 34.3
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 6.8e-13 78.6 204 32.4
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 8.9e-13 78.2 155 36.1
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.2e-12 77.8 147 29.9
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 1.2e-12 77.8 174 34.5
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 1.2e-12 77.8 174 34.5
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 1.2e-12 77.8 174 34.5
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.2e-12 77.8 84 48.8
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-12 77.4 164 29.9
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 1.5e-12 77.4 174 34.5
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 2.0e-12 77.0 186 37.1
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 4.4e-12 75.9 164 34.1
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 7.5e-12 75.1 154 33.1
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.9e-11 72.4 82 46.3
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 1.1e-10 71.2 171 35.7
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.4e-10 70.1 159 31.4
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.7e-09 66.6 220 30.0
AL6G49300 Arabidopsis lyrata HOM05D012310 ORTHO05D012594 5.0e-08 62.4 199 31.7
AT3G05450 Arabidopsis thaliana HOM05D004201 ORTHO05D011677 6.6e-08 62.0 229 30.1
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 8.6e-08 61.6 212 32.5
Carub.0006s3350 Capsella rubella HOM05D012310 ORTHO05D012594 1.5e-07 60.8 184 34.2
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.5e-07 58.2 80 36.2
THA.LOC104809658 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.6e-06 57.4 112 38.4
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-06 56.2 218 28.4
C05p03140 Brassica napus HOM05D007210 ORTHO05D006152 4.7e-06 55.8 112 29.5
BcaC05g24442 Brassica carinata HOM05D007210 ORTHO05D006152 8.1e-06 55.1 112 29.5


User provided reference genes

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