Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 4.6e-192 674.5 357 100.0
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 2.5e-190 668.7 357 99.2
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 3.6e-189 664.8 357 98.9
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 6.4e-178 627.5 364 92.9
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 2.4e-177 625.5 365 92.6
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 2.6e-171 605.5 361 90.9
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 4.3e-150 535.0 396 76.5
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 1.0e-143 513.8 383 77.0
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 2.5e-142 509.2 384 75.3
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 9.6e-142 507.3 375 76.3
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 6.9e-140 501.1 386 74.9
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 1.3e-133 480.3 382 70.4
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 2.6e-123 446.0 354 70.9
Thhalv10013868m.g Eutrema salsugineum HOM05D006712 ORTHO05D008219 7.2e-105 384.8 363 62.8
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 8.3e-93 344.7 379 53.6
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 1.4e-92 344.0 364 56.9
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 4.5e-91 339.0 371 55.3
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 1.9e-89 333.6 368 54.1
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 5.5e-89 332.0 360 54.2
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 7.2e-89 331.6 359 54.9
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 1.2e-88 330.9 249 73.9
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 1.6e-88 330.5 367 54.0
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 6.1e-88 328.6 387 53.0
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 3.0e-87 326.2 360 53.1
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 4.0e-87 325.9 365 52.6
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 1.5e-86 323.9 363 52.1
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 3.4e-86 322.8 390 52.1
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 7.5e-86 321.6 378 51.1
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 7.5e-86 321.6 379 50.7
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 1.4e-84 317.4 373 52.5
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 4.1e-84 315.8 381 51.7
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 7.0e-84 315.1 355 55.2
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 1.2e-83 314.3 358 52.8
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 2.0e-83 313.5 385 49.6
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 2.7e-83 313.2 383 51.7
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 5.9e-83 312.0 377 49.6
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 2.9e-82 309.7 371 51.8
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 3.8e-82 309.3 375 50.9
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 1.1e-81 307.8 375 51.2
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 3.3e-81 306.2 382 48.4
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 4.3e-81 305.8 377 49.6
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 2.1e-80 303.5 227 74.0
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 2.1e-80 303.5 362 49.4
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 6.1e-80 302.0 372 49.5
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 6.1e-80 302.0 358 48.6
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 6.1e-80 302.0 357 48.5
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 1.0e-79 301.2 382 49.7
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 1.0e-79 301.2 384 50.0
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 1.8e-79 300.4 369 49.6
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 5.2e-79 298.9 382 50.3
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 6.8e-79 298.5 366 51.6
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 1.2e-78 297.7 357 50.4
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 4.4e-78 295.8 363 48.2
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 2.2e-77 293.5 368 51.6
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 3.7e-77 292.7 376 47.6
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 4.9e-77 292.4 374 48.7
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 4.9e-77 292.4 422 46.7
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 8.3e-77 291.6 377 47.7
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 2.4e-76 290.0 357 49.6
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 3.2e-76 289.7 409 47.7
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 4.1e-76 289.3 376 49.7
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 7.0e-76 288.5 362 50.8
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 2.0e-75 287.0 460 41.3
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 7.8e-75 285.0 393 48.6
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 2.3e-74 283.5 362 50.6
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 3.0e-74 283.1 371 48.5
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 1.9e-73 280.4 368 47.8
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 3.3e-73 279.6 276 58.3
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 1.2e-72 277.7 408 44.4
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 1.9e-68 263.8 373 46.9
Cpa.g.sc103.11 Carica papaya HOM05D006712 ORTHO05D008219 5.4e-68 262.3 330 49.4
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 6.0e-67 258.8 355 45.4
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 7.8e-67 258.5 234 56.8
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.7e-66 257.3 286 50.0
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 1.5e-65 254.2 369 46.1
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 1.4e-63 247.7 372 44.1
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 4.4e-62 242.7 286 48.6
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 7.1e-60 235.3 255 51.0
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 9.2e-60 235.0 246 53.7
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 3.9e-58 229.6 273 48.4
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.5e-57 227.6 231 56.7
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 2.5e-57 226.9 228 51.8
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 3.3e-57 226.5 360 44.4
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 2.1e-56 223.8 369 42.8
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 3.6e-56 223.0 362 41.7
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 3.1e-55 219.9 250 49.2
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 5.2e-55 219.2 385 40.0
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 6.8e-55 218.8 222 51.4
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 5.8e-54 215.7 372 41.1
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 7.6e-54 215.3 471 38.6
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 6.4e-53 212.2 247 49.0
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 3.0e-50 203.4 287 42.9
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 3.0e-50 203.4 147 68.0
Sabra16G0127200 Salix brachista HOM05D006712 ORTHO05D008219 3.0e-50 203.4 266 46.2
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 3.9e-50 203.0 262 48.5
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 1.9e-49 200.7 275 45.5
SGA_v2.0_scaffold92G28138 Striga asiatica HOM05D006712 ORTHO05D008219 5.6e-49 199.1 343 41.7
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 4.7e-48 196.1 209 61.7
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 9.9e-46 188.3 189 61.4
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 2.2e-45 187.2 152 70.4
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 2.2e-45 187.2 152 70.4
Ah.15g099020 Amaranthus hybridus HOM05D006712 ORTHO05D008219 2.3e-42 177.2 285 44.9
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 8.7e-42 175.3 392 34.9
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 1.1e-41 174.9 312 42.6
Haze_23559 Corylus avellana HOM05D006712 ORTHO05D008219 2.5e-41 173.7 276 42.0
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 7.3e-41 172.2 236 45.8
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 9.6e-41 171.8 226 44.7
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 9.0e-39 165.2 384 36.7
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 2.6e-38 163.7 244 43.4
Pp3c7_620 Physcomitrium patens HOM05D006712 ORTHO05D008219 3.4e-38 163.3 396 34.8
ATR0772G163 Amborella trichopoda HOM05D006712 ORTHO05D008219 1.3e-34 151.4 280 40.7
SMO119G0218 Selaginella moellendorffii HOM05D006712 ORTHO05D008219 2.8e-32 143.7 339 33.0
Thecc.09G272200 Theobroma cacao HOM05D006712 ORTHO05D008219 1.1e-31 141.7 143 53.8
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 1.5e-25 121.3 200 41.0
QL01p019597 Quercus lobata HOM05D006712 ORTHO05D008219 1.0e-21 108.6 222 37.8
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 3.5e-19 100.1 65 73.8
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 7.9e-19 99.0 100 52.0
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 2.3e-18 97.4 73 71.2
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 3.0e-18 97.1 76 73.7
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 4.3e-17 93.2 93 58.1
C09p54560 Brassica napus HOM05D000021 ORTHO05D000010 4.3e-17 93.2 138 49.3
BolC9t58324H Brassica oleracea HOM05D000021 ORTHO05D000010 4.3e-17 93.2 138 49.3
CBR_g40336 Chara braunii HOM05D006712 ORTHO05D008219 1.8e-15 87.8 280 29.3
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 5.0e-13 79.7 91 50.5
Duzib170G0178 Durio zibethinus HOM05D006712 ORTHO05D008219 7.2e-12 75.9 92 46.7
BcaC04g19543 Brassica carinata HOM05D006712 ORTHO05D008219 9.3e-12 75.5 40 95.0
Cre08.g362850 Chlamydomonas reinhardtii HOM05D006712 ORTHO05D008219 5.9e-06 56.2 147 27.9


User provided reference genes

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