Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 7.6e-158 560.5 285 100.0
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 5.0e-125 451.4 255 92.9
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 6.1e-123 444.5 256 92.2
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 2.3e-122 442.6 256 91.8
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 7.0e-119 431.0 255 89.0
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 1.0e-117 427.2 255 89.0
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 2.8e-115 419.1 255 86.3
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 1.8e-114 416.4 255 85.5
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 8.9e-106 387.5 256 79.7
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 9.8e-105 384.0 256 78.9
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 6.0e-102 374.8 273 76.2
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 6.6e-101 371.3 258 77.9
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 5.6e-92 341.7 239 76.2
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 3.4e-81 305.8 255 65.1
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 1.6e-62 243.8 232 58.2
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.1e-62 243.4 232 58.2
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 1.3e-61 240.7 236 58.5
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 1.8e-61 240.4 225 57.3
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 2.3e-61 240.0 170 75.3
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 3.9e-61 239.2 232 57.8
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 1.3e-59 234.2 255 52.9
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 3.7e-59 232.6 232 56.9
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 4.8e-59 232.3 231 55.0
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 2.4e-58 229.9 231 54.1
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 3.1e-58 229.6 233 56.2
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 6.9e-58 228.4 233 54.9
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 2.6e-57 226.5 237 54.0
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 5.8e-57 225.3 255 50.6
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 2.9e-56 223.0 206 55.8
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 1.1e-55 221.1 255 50.6
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 1.9e-55 220.3 215 55.8
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 7.1e-55 218.4 225 51.6
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 7.1e-55 218.4 229 51.1
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 9.3e-55 218.0 255 50.2
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 1.6e-54 217.2 207 56.5
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 1.6e-54 217.2 231 51.9
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 3.5e-54 216.1 255 50.6
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 4.6e-54 215.7 256 50.8
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 6.0e-54 215.3 261 50.6
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 1.3e-53 214.2 230 52.6
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.8e-53 213.8 205 57.6
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.8e-53 213.8 205 57.6
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 3.0e-53 213.0 223 52.0
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 3.0e-53 213.0 262 50.0
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 3.0e-53 213.0 231 50.2
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 3.9e-53 212.6 229 53.7
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 1.1e-52 211.1 214 49.1
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 1.9e-52 210.3 216 54.6
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 3.3e-52 209.5 231 49.4
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 4.3e-52 209.1 233 50.2
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 5.6e-52 208.8 218 52.3
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 1.3e-51 207.6 224 54.0
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.3e-51 207.6 207 53.1
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 1.6e-51 207.2 226 48.2
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 1.6e-51 207.2 237 50.2
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 1.6e-51 207.2 230 50.9
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 2.1e-51 206.8 240 49.6
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 2.8e-51 206.5 201 54.2
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 3.7e-51 206.1 205 56.6
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 1.1e-50 204.5 222 53.6
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.4e-50 204.1 231 49.4
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 1.8e-50 203.8 237 47.7
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 2.4e-50 203.4 231 48.9
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 2.4e-50 203.4 199 54.3
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 3.1e-50 203.0 246 48.0
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 5.3e-50 202.2 230 49.6
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 9.0e-50 201.4 201 54.2
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 1.5e-49 200.7 199 58.3
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 4.5e-49 199.1 249 47.8
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 3.8e-48 196.1 268 44.0
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 3.8e-48 196.1 238 49.6
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 4.9e-48 195.7 199 52.8
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 1.0e-45 188.0 221 48.9
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.8e-45 187.2 230 48.3
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 1.5e-44 184.1 182 56.0
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 1.6e-43 180.6 222 50.0
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 2.2e-43 180.3 248 45.6
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 2.2e-43 180.3 225 44.0
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.4e-42 176.8 238 45.4
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 2.6e-41 173.3 296 38.9
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 3.4e-41 172.9 205 50.7
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 4.5e-41 172.6 241 42.3
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 5.9e-41 172.2 202 49.0
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 1.9e-39 167.2 232 43.1
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 9.4e-39 164.9 216 39.4
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 2.3e-37 160.2 215 43.7
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 1.5e-36 157.5 215 43.3
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 1.3e-35 154.5 213 41.3
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 1.7e-35 154.1 209 49.3
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 2.2e-35 153.7 235 45.1
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 7.7e-33 145.2 168 49.4
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 6.1e-30 135.6 163 49.7
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 1.4e-29 134.4 199 42.7
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 5.1e-29 132.5 199 39.2
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 8.8e-29 131.7 130 51.5
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 1.1e-28 131.3 200 46.0
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 2.6e-28 130.2 311 32.2
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 5.7e-28 129.0 259 34.4
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 3.7e-27 126.3 202 37.1
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 8.2e-27 125.2 139 48.9
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 1.7e-24 117.5 205 36.6
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 3.2e-23 113.2 86 64.0
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 6.1e-22 109.0 211 34.1
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 7.4e-20 102.1 204 36.3
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.7e-19 100.9 156 42.3
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 1.8e-18 97.4 82 62.2
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 2.4e-18 97.1 211 34.1
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.0e-17 94.0 82 57.3
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.6e-17 93.6 215 31.2
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 3.8e-16 89.7 159 39.6
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 5.0e-16 89.4 116 42.2
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 9.4e-15 85.1 62 62.9
C03p46250 Brassica napus HOM05D020391 ORTHO05D033527 1.4e-10 71.2 39 92.3
BolC8t50118H Brassica oleracea HOM05D020391 ORTHO05D033527 1.4e-10 71.2 39 92.3
Cpa.g.sc195.26 Carica papaya HOM05D005386 ORTHO05D006981 1.6e-09 67.8 103 39.8
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 2.2e-08 63.9 55 61.8
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 2.2e-08 63.9 98 43.9
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 1.6e-06 57.8 47 59.6


User provided reference genes

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