Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 4.3e-181 637.9 325 100.0
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 3.0e-158 562.0 342 86.5
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 4.3e-157 558.1 342 86.0
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 5.0e-145 518.1 342 81.3
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 3.2e-144 515.4 327 84.1
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 3.2e-144 515.4 345 81.2
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 4.8e-140 501.5 342 79.2
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 3.2e-136 488.8 340 77.4
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 4.1e-131 471.9 341 74.2
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 8.0e-127 457.6 343 72.6
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 4.4e-125 451.8 342 71.9
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 2.3e-102 376.3 273 76.2
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 9.2e-99 364.4 340 59.7
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 2.3e-81 306.6 316 53.5
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 3.0e-81 306.2 316 53.5
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 1.6e-79 300.4 320 52.5
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 3.6e-79 299.3 237 70.9
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 6.2e-79 298.5 316 53.2
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 2.3e-78 296.6 320 50.3
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.1e-78 296.2 321 51.1
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 1.7e-76 290.4 316 50.9
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 2.9e-76 289.7 317 49.5
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 2.9e-76 289.7 320 50.0
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 4.9e-76 288.9 317 51.1
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 6.4e-76 288.5 309 52.1
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 8.4e-76 288.1 320 49.4
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 2.4e-75 286.6 310 52.3
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 2.4e-75 286.6 319 51.4
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 2.7e-74 283.1 302 52.0
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 2.7e-74 283.1 322 50.3
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 3.0e-73 279.6 340 47.6
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 3.9e-73 279.3 310 51.9
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 1.1e-72 277.7 289 52.2
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 2.5e-72 276.6 291 53.3
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 2.5e-72 276.6 313 49.2
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 4.3e-72 275.8 345 47.8
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 2.8e-71 273.1 342 47.4
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 2.8e-71 273.1 283 54.1
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 8.1e-71 271.6 308 47.7
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 8.1e-71 271.6 319 49.5
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 1.8e-70 270.4 295 51.5
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 2.4e-70 270.0 289 51.9
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 3.1e-70 269.6 330 47.6
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 4.0e-70 269.2 291 51.2
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 5.2e-70 268.9 321 48.3
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 2.6e-69 266.5 335 46.9
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 2.2e-68 263.5 309 46.9
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 2.2e-68 263.5 303 49.2
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 3.8e-68 262.7 285 50.2
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 4.9e-68 262.3 289 51.6
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 4.9e-68 262.3 289 51.6
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 4.9e-68 262.3 318 48.7
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 1.1e-67 261.2 328 45.4
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.9e-67 260.4 289 50.2
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.9e-67 260.4 309 47.6
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 3.2e-67 259.6 304 48.4
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 4.2e-67 259.2 326 46.6
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 2.1e-66 256.9 322 46.9
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 2.1e-66 256.9 314 47.5
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 4.6e-66 255.8 315 46.7
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 4.6e-66 255.8 286 50.3
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 7.8e-66 255.0 315 46.3
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 2.3e-65 253.4 321 45.8
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 5.1e-65 252.3 169 79.3
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 6.6e-65 251.9 298 44.3
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 8.7e-65 251.5 324 45.1
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 1.9e-64 250.4 305 47.9
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 9.6e-64 248.1 293 47.1
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 1.6e-63 247.3 295 48.8
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 2.1e-63 246.9 283 49.5
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 1.8e-62 243.8 290 46.2
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 3.1e-62 243.0 282 47.2
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 6.9e-62 241.9 291 47.8
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 9.0e-62 241.5 311 46.6
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 2.6e-61 240.0 308 47.7
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 1.1e-59 234.6 294 46.9
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 3.5e-58 229.6 379 39.3
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 6.0e-58 228.8 307 45.6
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.5e-56 223.4 289 47.4
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.6e-55 219.5 214 54.2
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 3.6e-55 219.5 329 39.5
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 4.8e-55 219.2 291 48.1
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 8.1e-55 218.4 298 42.6
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 1.1e-54 218.0 287 42.9
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 3.1e-54 216.5 318 40.6
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 4.0e-54 216.1 316 44.0
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 1.3e-52 211.1 303 41.3
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 2.9e-52 209.9 256 46.5
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 6.0e-50 202.2 270 43.7
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 1.3e-49 201.1 304 39.5
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 3.0e-49 199.9 277 43.3
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 5.6e-48 195.7 328 38.1
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 2.8e-47 193.4 392 32.1
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 3.2e-43 179.9 283 42.0
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 7.1e-43 178.7 142 62.0
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 2.1e-42 177.2 297 38.0
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 2.1e-39 167.2 217 41.9
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 8.2e-39 165.2 285 36.1
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 5.3e-38 162.5 168 51.8
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.0e-37 160.6 88 88.6
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 2.6e-37 160.2 172 50.6
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.2e-34 151.4 139 56.1
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 6.1e-34 149.1 115 61.7
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 1.8e-33 147.5 89 77.5
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 6.7e-33 145.6 179 46.4
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 1.1e-32 144.8 259 38.2
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 9.7e-32 141.7 275 36.0
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 6.9e-30 135.6 115 57.4
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 2.0e-29 134.0 284 34.2
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 2.0e-29 134.0 106 62.3
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.0e-28 131.7 164 45.7
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.3e-25 120.6 232 36.6
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 5.1e-25 119.4 201 37.3
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 2.0e-24 117.5 297 31.6
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 1.3e-23 114.8 201 44.3
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 1.7e-23 114.4 139 45.3
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 2.8e-23 113.6 117 50.4
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 1.4e-22 111.3 135 49.6
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.2e-20 104.0 114 50.9
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 1.8e-17 94.4 82 61.0
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 4.8e-15 86.3 82 57.3
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 1.0e-12 78.6 89 46.1
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 3.2e-11 73.6 54 63.0
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 6.1e-10 69.3 61 60.7
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 8.0e-10 68.9 61 60.7
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 4.0e-09 66.6 93 35.5
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 6.7e-09 65.9 52 69.2
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 2.6e-08 63.9 49 61.2
Cpa.g.sc195.26 Carica papaya HOM05D005386 ORTHO05D006981 3.3e-08 63.5 78 47.4
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 5.7e-08 62.8 63 54.0
arahy.Tifrunner.gnm1.ann1.YZK62K Arachis hypogaea HOM05D005386 ORTHO05D006981 7.5e-08 62.4 77 44.2
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 8.2e-07 58.9 47 61.7
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 7.0e-06 55.8 62 45.2


User provided reference genes

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