Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 0.0e+00 1118.6 576 100.0
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 2.7e-279 964.9 497 98.0
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 6.5e-273 943.7 489 96.3
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.1e-269 932.9 495 94.5
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.4e-267 926.0 494 92.9
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.8e-267 925.6 505 92.7
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 3.8e-265 917.9 498 92.8
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 6.5e-265 917.1 498 92.8
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 6.5e-265 917.1 498 92.8
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 3.6e-263 911.4 496 92.5
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.8e-262 909.1 496 92.3
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.3e-262 908.7 494 92.3
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.5e-261 906.0 492 91.3
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 2.8e-260 901.7 507 90.7
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.7e-260 901.4 495 90.7
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 6.3e-260 900.6 494 91.1
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 7.7e-258 893.6 494 90.3
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.9e-257 891.7 494 90.1
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.5e-256 889.4 494 89.9
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 4.2e-256 887.9 493 89.7
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.6e-255 885.9 496 89.3
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.3e-252 876.3 490 90.2
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 8.5e-249 863.6 491 88.4
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 3.2e-248 861.7 493 87.8
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.2e-247 859.8 497 87.3
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 4.1e-243 844.7 488 86.7
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 2.3e-233 812.4 492 82.1
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 7.3e-224 780.8 527 76.9
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 2.8e-223 778.9 493 78.5
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 1.6e-218 763.1 497 75.9
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.3e-217 759.2 485 77.3
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.1e-216 756.9 498 76.5
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.5e-216 756.5 483 77.2
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 8.9e-214 747.3 490 75.3
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.5e-213 746.5 493 74.6
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.6e-213 745.7 496 74.8
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 3.4e-213 745.3 495 74.7
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 7.5e-213 744.2 494 75.1
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 9.9e-213 743.8 499 74.5
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 8.3e-212 740.7 492 74.8
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.9e-211 739.6 488 74.2
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 4.1e-211 738.4 492 74.6
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 6.0e-210 734.6 490 74.5
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 6.0e-210 734.6 494 74.5
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 6.0e-210 734.6 494 74.5
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.0e-209 733.8 485 74.8
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.3e-209 733.4 486 75.1
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.3e-209 733.4 493 73.2
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.7e-209 733.0 490 74.3
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-209 733.0 491 73.9
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.7e-209 733.0 492 74.6
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 3.0e-209 732.3 480 75.0
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.9e-209 731.9 490 74.3
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.1e-209 731.5 491 73.7
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 6.6e-209 731.1 493 74.8
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 8.6e-209 730.7 496 72.8
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 8.6e-209 730.7 489 74.2
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.9e-208 729.6 496 72.6
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.9e-208 729.6 490 73.9
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.5e-208 729.2 484 74.2
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 2.5e-208 729.2 498 73.3
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 3.3e-208 728.8 495 73.9
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 5.6e-208 728.0 494 73.1
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 7.3e-208 727.6 485 73.2
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.5e-208 727.2 491 73.7
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 2.1e-207 726.1 495 74.3
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 6.2e-207 724.5 490 73.3
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.1e-206 722.2 491 72.1
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 4.0e-206 721.8 478 75.1
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 5.2e-206 721.5 491 72.7
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 8.9e-206 720.7 493 73.4
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.0e-205 719.5 508 71.1
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.6e-205 719.2 496 71.8
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 3.4e-205 718.8 484 73.8
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 4.4e-205 718.4 516 69.8
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 5.8e-205 718.0 481 74.0
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.3e-204 716.8 491 72.7
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.7e-204 716.5 491 72.3
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.2e-204 716.1 491 72.3
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 3.2e-203 712.2 480 72.9
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 4.2e-203 711.8 482 73.7
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 4.2e-203 711.8 500 70.8
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 7.1e-203 711.1 493 72.2
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.7e-202 709.1 478 73.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.3e-201 706.1 530 68.3
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 6.6e-201 704.5 492 72.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 8.7e-201 704.1 479 71.6
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.6e-199 699.9 490 71.8
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.3e-196 690.3 482 71.0
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 6.4e-196 688.0 525 68.0
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.4e-195 686.8 480 71.2
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.9e-195 686.4 485 70.9
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.9e-195 686.4 485 70.9
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.5e-194 682.2 485 70.5
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.3e-193 680.2 488 69.1
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.7e-193 679.9 488 69.3
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 4.3e-192 675.2 480 70.2
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 9.6e-192 674.1 496 68.5
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.2e-189 667.2 489 67.7
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.0e-189 666.4 500 67.4
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.6e-189 666.0 490 66.7
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 3.8e-188 662.1 492 69.3
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.4e-187 660.2 454 71.8
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 2.7e-186 656.0 501 66.1
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.0e-185 654.1 487 65.7
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.3e-183 647.1 496 68.3
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.3e-183 647.1 486 66.0
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 3.7e-183 645.6 514 64.6
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 2.4e-182 642.9 490 67.3
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 3.1e-182 642.5 570 60.0
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.5e-181 638.6 471 67.5
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 4.5e-181 638.6 496 64.5
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 2.2e-180 636.3 494 65.2
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 2.5e-179 632.9 487 65.1
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 3.5e-178 629.0 501 61.7
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 4.6e-178 628.6 485 66.0
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 6.7e-177 624.8 489 63.0
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.8e-175 619.4 486 63.6
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 6.2e-175 618.2 474 66.2
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 8.2e-175 617.8 497 65.4
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.9e-172 609.4 481 65.3
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.4e-171 607.1 488 63.3
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 3.2e-171 605.9 490 65.5
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-170 604.0 300 99.7
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.5e-168 596.3 400 73.8
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.2e-165 587.4 362 82.6
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.6e-165 586.3 504 63.1
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.4e-158 563.9 503 57.7
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 6.5e-156 555.1 380 74.7
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 4.7e-154 548.9 452 60.0
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.4e-153 547.4 494 57.5
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.7e-148 530.4 357 73.9
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 8.5e-148 528.1 549 54.1
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 3.6e-146 522.7 396 66.9
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-145 521.2 395 68.6
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.4e-145 520.8 355 73.8
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-143 514.2 343 74.9
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 5.5e-139 498.8 393 66.7
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.3e-127 461.1 468 52.4
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.2e-125 454.5 356 65.7
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 6.1e-122 442.2 303 73.3
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.4e-118 429.1 402 58.0
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.3e-113 413.7 280 72.5
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 4.0e-113 412.9 275 75.3
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-110 404.8 272 73.5
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 5.8e-88 329.3 252 65.9
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.6e-82 310.1 461 38.8
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 5.8e-80 302.8 247 66.8
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-76 292.0 187 76.5
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.2e-74 282.7 181 74.6
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.6e-69 268.1 204 68.6
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 4.6e-69 266.5 138 96.4
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 1.0e-63 248.8 201 62.2
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.0e-52 212.2 134 76.9
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 3.9e-52 210.3 228 51.8
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.6e-50 204.9 153 69.9
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 6.3e-50 203.0 134 74.6
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.1e-49 200.7 126 77.0
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 4.1e-49 200.3 253 45.8
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.1e-45 188.0 258 47.3
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 9.1e-41 172.6 114 71.9
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 2.9e-39 167.5 119 68.9
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.0e-36 157.5 114 68.4
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.8e-34 151.0 93 73.1
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.8e-34 151.0 93 73.1
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 8.2e-34 149.4 163 48.5
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 4.1e-25 120.6 69 82.6
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 3.5e-24 117.5 63 88.9
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 2.9e-23 114.4 66 81.8
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 5.5e-22 110.2 72 72.2
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 5.5e-22 110.2 97 60.8
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.8e-20 105.1 65 78.5
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.5e-19 102.1 65 75.4
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 2.0e-19 101.7 103 55.3
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.4e-19 100.5 65 73.8
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.4e-19 100.5 65 81.5
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 1.3e-18 99.0 67 70.1
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.2e-16 92.4 77 63.6
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.1e-14 85.9 54 79.6
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 6.8e-12 76.6 48 64.6
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 2.4e-09 68.2 48 68.8
BcaC03g13887 Brassica carinata HOM05D003643 ORTHO05D032482 7.7e-08 63.2 37 83.8
C02p10890 Brassica napus HOM05D003643 ORTHO05D032482 2.3e-07 61.6 36 83.3
BolC2t07159H Brassica oleracea HOM05D003643 ORTHO05D032482 2.3e-07 61.6 36 83.3
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 6.6e-07 60.1 48 72.9


User provided reference genes

Program Settings