Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06536 Brassica carinata HOM05D007298 ORTHO05D009226 7.1e-59 230.3 112 100.0
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 1.0e-52 209.9 113 90.3
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 1.0e-52 209.9 113 90.3
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 1.3e-52 209.5 112 90.2
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 1.3e-52 209.5 112 90.2
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 3.9e-49 198.0 112 86.6
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 3.7e-47 191.4 114 85.1
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 2.6e-45 185.3 117 79.5
C01p22270 Brassica napus HOM05D007298 ORTHO05D009226 2.6e-45 185.3 114 84.2
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 2.1e-42 175.6 95 88.4
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 1.1e-40 169.9 116 74.1
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 1.9e-40 169.1 119 71.4
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 2.0e-37 159.1 95 80.0
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 2.6e-37 158.7 100 79.0
BcaC09g50700 Brassica carinata HOM05D007298 ORTHO05D009226 3.4e-37 158.3 96 83.3
BolC1t02157H Brassica oleracea HOM05D007298 ORTHO05D009226 3.4e-37 158.3 96 83.3
BolC3t13782H Brassica oleracea HOM05D007298 ORTHO05D009226 2.0e-29 132.5 63 100.0
A01p17630 Brassica napus HOM05D007298 ORTHO05D009226 2.8e-23 112.1 64 84.4
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 1.4e-22 109.8 113 59.3
BraA01t01717Z Brassica rapa HOM05D007298 ORTHO05D009226 4.1e-22 108.2 64 81.2
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 1.6e-10 69.7 86 51.2
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 1.6e-10 69.7 86 51.2
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 2.1e-10 69.3 96 46.9
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 8.0e-10 67.4 111 45.0
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 1.4e-09 66.6 86 50.0
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 1.4e-09 66.6 99 44.4
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.4e-09 66.6 120 44.2
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 2.3e-09 65.9 105 41.0
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 3.0e-09 65.5 96 41.7
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 8.8e-09 63.9 106 38.7
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 8.8e-09 63.9 106 38.7
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 1.2e-08 63.5 122 42.6
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 1.2e-08 63.5 106 38.7
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 2.0e-08 62.8 111 44.1
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 2.6e-08 62.4 95 45.3
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 2.6e-08 62.4 86 45.3
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 4.4e-08 61.6 102 42.2
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 7.5e-08 60.8 91 45.1
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 7.5e-08 60.8 91 45.1
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 7.5e-08 60.8 115 42.6
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 9.8e-08 60.5 98 41.8
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 1.3e-07 60.1 115 41.7
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 1.7e-07 59.7 106 40.6
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 1.7e-07 59.7 111 39.6
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 1.7e-07 59.7 88 40.9
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 2.2e-07 59.3 90 38.9
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 4.8e-07 58.2 99 42.4
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 8.3e-07 57.4 86 43.0
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 8.3e-07 57.4 125 38.4
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 8.3e-07 57.4 91 46.2
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 4.1e-06 55.1 87 43.7
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 4.1e-06 55.1 99 41.4
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 5.4e-06 54.7 91 39.6
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 5.4e-06 54.7 87 39.1
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 5.4e-06 54.7 91 39.6


User provided reference genes

Program Settings