Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 3.5e-75 285.0 161 100.0
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 8.7e-50 200.7 181 68.5
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 1.4e-47 193.4 173 68.8
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 6.0e-43 177.9 176 64.2
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 1.9e-41 172.9 177 63.3
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 1.3e-40 170.2 172 65.1
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 1.3e-40 170.2 172 65.1
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 1.3e-40 170.2 172 65.1
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 3.7e-40 168.7 177 62.7
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 3.7e-40 168.7 172 64.5
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 1.8e-39 166.4 172 64.5
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 6.9e-39 164.5 159 66.0
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 5.8e-38 161.4 179 61.5
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 2.2e-37 159.5 176 60.8
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 3.8e-37 158.7 176 61.4
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 1.1e-36 157.1 159 62.9
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 2.7e-35 152.5 177 58.8
BcaB01g04584 Brassica carinata HOM05D004998 ORTHO05D006104 1.5e-30 136.7 101 80.2
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 3.4e-30 135.6 181 53.0
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 6.5e-29 131.3 130 65.4
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 1.9e-28 129.8 153 62.7
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 3.2e-28 129.0 142 60.6
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 4.2e-28 128.6 146 59.6
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 1.0e-26 124.0 160 52.5
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 1.5e-25 120.2 130 61.5
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 2.8e-24 115.9 129 57.4
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 9.1e-23 110.9 128 54.7
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 7.7e-22 107.8 65 89.2
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 6.5e-21 104.8 180 48.3
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.4e-20 103.6 185 44.3
C01p49830 Brassica napus HOM05D004998 ORTHO05D006104 1.4e-18 97.1 75 76.0
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 3.9e-18 95.5 184 45.7
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 6.7e-18 94.7 184 41.8
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 1.7e-16 90.1 185 41.6
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 3.1e-15 85.9 182 42.3
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 1.2e-14 84.0 192 39.6
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 1.5e-14 83.6 177 40.1
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 3.4e-14 82.4 190 37.9
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 3.4e-14 82.4 179 38.0
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 4.5e-14 82.0 185 41.1
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 3.8e-13 79.0 183 38.8
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 6.5e-13 78.2 185 38.4
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 1.4e-12 77.0 179 39.7
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.9e-12 76.6 171 41.5
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.9e-12 76.6 166 41.6
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.9e-12 76.6 166 41.6
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 2.5e-12 76.3 181 38.1
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 2.5e-12 76.3 181 38.1
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 2.5e-12 76.3 181 38.1
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 4.2e-12 75.5 180 39.4
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 5.5e-12 75.1 170 38.8
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 5.5e-12 75.1 180 38.3
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 7.2e-12 74.7 174 38.5
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 7.2e-12 74.7 174 39.1
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 9.4e-12 74.3 184 37.0
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.2e-11 73.9 170 38.8
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.2e-11 73.9 185 40.0
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.6e-11 73.6 184 38.0
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 2.1e-11 73.2 169 40.8
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 2.7e-11 72.8 192 37.0
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 3.6e-11 72.4 180 35.0
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 4.7e-11 72.0 186 38.2
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 6.1e-11 71.6 182 35.7
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 8.0e-11 71.2 181 39.2
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 8.0e-11 71.2 189 37.0
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.0e-10 70.9 181 33.7
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 1.0e-10 70.9 182 36.8
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 1.0e-10 70.9 189 33.9
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 3.0e-10 69.3 177 36.2
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 3.0e-10 69.3 189 35.4
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 3.0e-10 69.3 191 37.7
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 3.9e-10 68.9 177 40.1
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 3.9e-10 68.9 172 39.5
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 3.9e-10 68.9 136 43.4
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 3.9e-10 68.9 176 34.7
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 5.2e-10 68.6 177 35.0
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 5.2e-10 68.6 187 35.3
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 6.7e-10 68.2 179 37.4
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 6.7e-10 68.2 120 40.8
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 1.5e-09 67.0 185 36.8
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.5e-09 67.0 184 35.3
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 3.3e-09 65.9 183 36.1
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 4.4e-09 65.5 187 34.2
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 4.4e-09 65.5 186 34.9
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 4.4e-09 65.5 126 42.1
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 7.4e-09 64.7 178 34.3
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 7.4e-09 64.7 182 35.2
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 9.7e-09 64.3 186 34.4
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 1.3e-08 63.9 179 35.8
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 1.3e-08 63.9 179 35.2
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.3e-08 63.9 155 40.0
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 1.7e-08 63.5 183 32.8
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 2.2e-08 63.2 179 33.5
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.7e-08 62.4 136 40.4
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 4.8e-08 62.0 132 38.6
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 4.8e-08 62.0 185 37.8
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 6.3e-08 61.6 93 45.2
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.3e-08 61.6 183 35.5
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.3e-08 61.6 134 40.3
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 6.3e-08 61.6 186 33.9
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 8.2e-08 61.2 132 38.6
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.1e-07 60.8 178 35.4
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.1e-07 60.8 182 34.6
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 1.8e-07 60.1 169 36.1
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.1e-07 59.3 150 40.0
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 5.3e-07 58.5 133 37.6
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.2e-06 57.4 175 30.9
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 2.0e-06 56.6 184 34.8
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 2.0e-06 56.6 106 41.5
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.0e-06 56.6 150 39.3
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 2.0e-06 56.6 190 35.8
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 2.6e-06 56.2 188 32.4
A01p36350 Brassica napus HOM05D004998 ORTHO05D006104 2.6e-06 56.2 42 78.6
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 2.6e-06 56.2 122 38.5
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 3.5e-06 55.8 179 35.8
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 3.5e-06 55.8 190 35.8


User provided reference genes

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