Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 6.2e-24 113.2 55 100.0
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 5.1e-18 93.6 49 87.8
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 6.7e-18 93.2 54 79.6
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.1e-17 92.4 49 85.7
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.9e-17 91.7 49 85.7
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.5e-17 91.3 49 85.7
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 4.3e-17 90.5 54 77.8
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 5.7e-17 90.1 49 83.7
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 9.6e-17 89.4 54 75.9
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 9.6e-17 89.4 54 75.9
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 9.6e-17 89.4 54 75.9
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 2.8e-16 87.8 49 79.6
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 8.2e-16 86.3 49 79.6
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 8.2e-16 86.3 49 79.6
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-15 85.5 49 79.6
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-15 85.5 49 79.6
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 1.4e-15 85.5 49 79.6
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.4e-15 85.5 49 79.6
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.4e-15 85.5 49 79.6
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.4e-15 85.5 49 79.6
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.8e-15 85.1 49 77.6
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 1.8e-15 85.1 49 79.6
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 3.1e-15 84.3 52 75.0
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 4.0e-15 84.0 49 77.6
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 6.9e-15 83.2 49 79.6
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 9.0e-15 82.8 49 75.5
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 9.0e-15 82.8 49 75.5
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.5e-14 82.0 49 77.6
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 2.0e-14 81.6 49 73.5
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 2.6e-14 81.3 49 75.5
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.5e-14 80.5 49 73.5
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 4.5e-14 80.5 49 73.5
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 4.5e-14 80.5 49 73.5
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 4.5e-14 80.5 49 75.5
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 7.6e-14 79.7 49 71.4
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 7.6e-14 79.7 48 75.0
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 7.6e-14 79.7 49 73.5
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 1.0e-13 79.3 49 73.5
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 1.3e-13 79.0 49 73.5
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 1.3e-13 79.0 49 71.4
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 1.7e-13 78.6 48 75.0
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 2.9e-13 77.8 48 75.0
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.9e-13 77.8 47 74.5
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.9e-13 77.8 49 69.4
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.9e-13 77.8 49 69.4
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.8e-13 77.4 49 73.5
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 3.8e-13 77.4 49 71.4
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 6.5e-13 76.6 47 76.6
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 6.5e-13 76.6 49 71.4
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 6.5e-13 76.6 49 71.4
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 6.5e-13 76.6 49 71.4
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 6.5e-13 76.6 48 72.9
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 6.5e-13 76.6 48 72.9
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 6.5e-13 76.6 48 72.9
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 8.4e-13 76.3 48 72.9
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 8.4e-13 76.3 49 71.4
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 1.1e-12 75.9 48 72.9
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 1.1e-12 75.9 49 69.4
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.1e-12 75.9 49 69.4
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.4e-12 75.5 48 72.9
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 1.9e-12 75.1 48 70.8
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 1.9e-12 75.1 48 72.9
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 2.5e-12 74.7 49 75.5
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 2.5e-12 74.7 47 74.5
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 2.5e-12 74.7 48 70.8
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 3.2e-12 74.3 54 64.8
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 3.2e-12 74.3 54 64.8
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 3.2e-12 74.3 49 67.3
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.2e-12 73.9 47 72.3
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 4.2e-12 73.9 47 72.3
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 5.5e-12 73.6 49 67.3
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 5.5e-12 73.6 49 67.3
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 5.5e-12 73.6 48 68.8
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 5.5e-12 73.6 49 67.3
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 7.1e-12 73.2 48 70.8
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 7.1e-12 73.2 49 63.3
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 7.1e-12 73.2 49 69.4
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 7.1e-12 73.2 48 70.8
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 7.1e-12 73.2 48 68.8
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 1.2e-11 72.4 47 70.2
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.2e-11 72.4 47 70.2
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 1.6e-11 72.0 49 65.3
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 1.6e-11 72.0 49 65.3
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.1e-11 71.6 48 68.8
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 2.1e-11 71.6 48 66.7
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.1e-11 71.6 49 65.3
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.1e-11 71.6 46 71.7
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.1e-11 71.6 46 71.7
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 2.7e-11 71.2 47 70.2
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.7e-11 71.2 47 70.2
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 2.7e-11 71.2 49 65.3
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 3.5e-11 70.9 47 68.1
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.5e-11 70.9 47 68.1
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.5e-11 70.9 47 68.1
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 4.6e-11 70.5 49 61.2
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 4.6e-11 70.5 49 61.2
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 4.6e-11 70.5 51 60.8
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 4.6e-11 70.5 48 68.8
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 6.1e-11 70.1 49 63.3
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 6.1e-11 70.1 49 63.3
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 7.9e-11 69.7 49 63.3
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 7.9e-11 69.7 49 63.3
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.8e-10 68.6 49 61.2
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.8e-10 68.6 43 72.1
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 1.8e-10 68.6 48 64.6
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 2.3e-10 68.2 48 66.7
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.3e-10 68.2 49 63.3
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 3.9e-10 67.4 44 70.5
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 3.9e-10 67.4 47 66.0
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 6.7e-10 66.6 49 63.3
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 6.7e-10 66.6 47 66.0
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 1.9e-09 65.1 47 63.8
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 4.3e-09 63.9 49 57.1
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 5.7e-09 63.5 38 78.9
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 9.7e-09 62.8 45 66.7
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 9.7e-09 62.8 42 66.7
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 9.7e-09 62.8 50 58.0
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.6e-08 62.0 44 61.4
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 2.2e-08 61.6 48 58.3
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.2e-08 61.6 47 59.6
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.2e-08 61.6 49 53.1
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 3.7e-08 60.8 49 55.1
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 3.7e-08 60.8 42 64.3
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 3.7e-08 60.8 49 53.1
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.1e-07 59.3 49 49.0
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 1.8e-07 58.5 49 46.9
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.5e-06 55.5 47 53.2
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 4.5e-06 53.9 46 54.3
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.0e-05 52.8 38 60.5


User provided reference genes

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