Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1143.6 615 100.0
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.6e-245 852.8 678 72.4
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 2.8e-221 772.3 623 75.3
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 1.3e-210 736.9 623 72.1
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 1.4e-209 733.4 624 72.1
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 5.4e-209 731.5 623 71.7
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 2.1e-208 729.6 626 71.6
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 2.1e-208 729.6 625 71.7
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 4.7e-205 718.4 625 69.4
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 5.2e-204 714.9 627 68.4
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 1.9e-201 706.4 630 67.5
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 1.9e-201 706.4 623 69.2
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 2.1e-200 703.0 625 68.6
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 5.1e-199 698.4 623 64.2
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 9.6e-198 694.1 634 67.8
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 4.7e-197 691.8 625 65.4
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 1.7e-194 683.3 630 66.2
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 6.4e-194 681.4 632 65.8
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 5.4e-193 678.3 624 64.7
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 6.0e-192 674.9 624 62.7
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 8.4e-186 654.4 629 64.7
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 7.9e-184 647.9 624 62.2
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.3e-181 640.6 623 59.7
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 6.3e-165 585.1 633 55.5
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 5.3e-164 582.0 629 56.1
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 2.6e-163 579.7 629 54.4
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.3e-162 577.4 632 53.8
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.9e-162 576.2 631 54.2
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.9e-162 576.2 631 54.2
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 1.9e-161 573.5 632 54.0
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 3.6e-160 569.3 615 54.5
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 6.1e-160 568.5 663 51.4
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.0e-159 567.8 631 55.3
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 1.8e-159 567.0 635 53.5
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 3.0e-159 566.2 633 53.2
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 5.1e-159 565.5 631 55.3
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 8.8e-159 564.7 630 53.0
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 1.9e-158 563.5 634 53.3
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 2.5e-158 563.1 631 52.8
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 7.4e-158 561.6 635 52.9
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 2.2e-157 560.1 632 52.2
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.4e-156 557.4 633 54.2
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 1.8e-156 557.0 635 52.6
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 2.4e-156 556.6 635 52.8
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 6.9e-156 555.1 633 52.4
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 1.5e-155 553.9 629 52.5
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 2.6e-155 553.1 629 51.8
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 7.7e-155 551.6 635 52.1
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 1.0e-154 551.2 619 53.8
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 1.0e-154 551.2 630 52.5
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 1.3e-154 550.8 630 53.7
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 2.9e-154 549.7 630 51.9
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 2.9e-154 549.7 637 52.4
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 2.9e-154 549.7 634 53.0
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 5.0e-154 548.9 614 53.1
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 5.0e-154 548.9 638 52.8
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 8.5e-154 548.1 637 51.5
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 8.5e-154 548.1 635 52.1
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.5e-153 546.6 613 53.7
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 2.5e-153 546.6 630 52.2
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 9.4e-153 544.7 634 52.7
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 1.2e-152 544.3 640 54.1
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 1.4e-151 540.8 627 52.0
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 1.8e-151 540.4 615 52.0
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.3e-151 540.0 561 56.0
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 1.1e-150 537.7 611 53.4
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.1e-150 537.7 644 51.4
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.1e-150 537.7 616 52.9
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 2.6e-150 536.6 629 52.0
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 3.3e-150 536.2 643 50.9
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 4.4e-150 535.8 629 52.0
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.4e-150 535.8 629 51.7
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 8.2e-149 531.6 614 51.8
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 5.3e-148 528.9 614 52.1
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 1.2e-147 527.7 631 50.7
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.5e-147 527.3 604 52.5
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.5e-147 527.3 604 52.2
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 2.0e-147 526.9 500 59.2
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 7.7e-147 525.0 615 51.4
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.7e-146 523.9 631 51.0
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.8e-146 522.7 613 52.4
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 8.5e-146 521.5 632 51.6
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 8.5e-146 521.5 600 51.5
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.9e-145 520.4 599 54.6
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 9.4e-145 518.1 628 49.5
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 2.7e-144 516.5 614 51.1
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 4.7e-144 515.8 616 51.0
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.0e-143 514.6 501 58.7
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.4e-143 514.2 618 50.0
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 1.4e-143 514.2 618 50.0
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 1.8e-143 513.8 620 50.3
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 3.9e-143 512.7 616 50.8
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 5.2e-143 512.3 620 50.3
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 8.8e-143 511.5 618 49.8
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 1.5e-142 510.8 616 50.0
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 9.7e-142 508.1 616 50.2
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 1.7e-141 507.3 646 52.0
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.7e-141 507.3 655 47.8
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 3.7e-141 506.1 620 50.6
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.8e-141 505.8 620 50.0
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 4.1e-140 502.7 626 49.7
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 2.0e-139 500.4 640 49.5
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 5.9e-139 498.8 582 51.0
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.3e-138 497.7 638 48.3
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 2.9e-138 496.5 631 48.0
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 8.5e-138 495.0 618 49.7
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 2.4e-132 476.9 580 50.2
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.0e-132 475.3 628 47.8
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.2e-131 474.6 580 50.5
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 3.2e-129 466.5 620 47.6
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 5.7e-126 455.7 639 45.4
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.7e-125 454.1 526 52.9
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 8.0e-120 435.3 586 48.0
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.0e-119 434.9 519 51.3
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 9.8e-118 428.3 620 44.2
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 2.0e-115 420.6 633 44.4
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.0e-111 408.3 605 46.0
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 6.8e-111 405.6 622 42.4
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.7e-109 401.0 620 41.5
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 4.9e-109 399.4 586 44.0
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.3e-89 332.4 507 44.4
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.1e-80 304.3 296 59.1
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 3.1e-79 300.4 636 35.4
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.9e-76 291.2 646 34.1
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 1.0e-66 258.8 667 32.7
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 9.6e-65 252.3 333 49.8
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 4.0e-63 246.9 222 58.1
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.1e-47 195.7 292 45.2
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 1.5e-41 175.3 335 35.5
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 3.5e-22 110.9 236 31.4
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.7e-21 108.6 99 62.6
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 7.2e-20 103.2 73 68.5
BraA03t09862Z Brassica rapa HOM05D000239 ORTHO05D000484 2.1e-19 101.7 83 68.7
BcaB01g05450 Brassica carinata HOM05D000239 ORTHO05D000484 2.7e-19 101.3 90 64.4
A03p05220 Brassica napus HOM05D000239 ORTHO05D000484 2.7e-19 101.3 83 67.5
C03p06020 Brassica napus HOM05D000239 ORTHO05D000484 3.6e-19 100.9 83 67.5
BolC3t13113H Brassica oleracea HOM05D000239 ORTHO05D000484 3.6e-19 100.9 83 67.5
AL6G22610 Arabidopsis lyrata HOM05D000239 ORTHO05D000484 6.1e-19 100.1 83 71.1
Thhalv10012636m.g Eutrema salsugineum HOM05D000239 ORTHO05D000484 6.1e-19 100.1 83 71.1
AT5G11850 Arabidopsis thaliana HOM05D000239 ORTHO05D000484 1.8e-18 98.6 83 69.9
Aa31LG3G15350 Aethionema arabicum HOM05D000239 ORTHO05D000484 2.3e-18 98.2 83 69.9
Carub.0006s1038 Capsella rubella HOM05D000239 ORTHO05D000484 2.3e-18 98.2 83 69.9
Sp6g31750 Schrenkiella parvula HOM05D000239 ORTHO05D000484 2.3e-18 98.2 83 69.9
BcaC03g13396 Brassica carinata HOM05D000239 ORTHO05D000484 4.0e-18 97.4 83 69.9
BcaNung02649 Brassica carinata HOM05D000239 ORTHO05D000484 4.0e-18 97.4 83 69.9
A02p01240 Brassica napus HOM05D000239 ORTHO05D000484 4.0e-18 97.4 83 69.9
C02p05420 Brassica napus HOM05D000239 ORTHO05D000484 4.0e-18 97.4 83 69.9
BolC2t06490H Brassica oleracea HOM05D000239 ORTHO05D000484 4.0e-18 97.4 83 69.9
BraA02t05103Z Brassica rapa HOM05D000239 ORTHO05D000484 4.0e-18 97.4 83 69.9
CARHR201310 Cardamine hirsuta HOM05D000239 ORTHO05D000484 3.4e-17 94.4 83 68.7
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 9.7e-17 92.8 55 81.8
THA.LOC104799167 Tarenaya hassleriana HOM05D000239 ORTHO05D000484 4.1e-15 87.4 81 64.2
THA.LOC104824610 Tarenaya hassleriana HOM05D000239 ORTHO05D000484 1.1e-12 79.3 65 66.2
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 7.5e-09 66.6 44 70.5
Atru.chr7.1060 Acer truncatum HOM05D000239 ORTHO05D000484 1.3e-08 65.9 62 54.8
Cfa017952 Carpinus fangiana HOM05D000239 ORTHO05D000484 1.7e-08 65.5 85 48.2
Ciclev10010193m.g Citrus clementina HOM05D000239 ORTHO05D000484 1.7e-08 65.5 62 54.8
Manes.16G080200 Manihot esculenta HOM05D000239 ORTHO05D000484 4.8e-08 63.9 72 50.0
Potri.006G229400 Populus trichocarpa HOM05D000239 ORTHO05D000484 1.4e-07 62.4 74 47.3
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 4.1e-07 60.8 56 57.1
Prupe.1G412200 Prunus persica HOM05D000239 ORTHO05D000484 7.0e-07 60.1 73 45.2
Potri.018G053800 Populus trichocarpa HOM05D000239 ORTHO05D000484 1.2e-06 59.3 74 45.9
QL02p001239 Quercus lobata HOM05D000239 ORTHO05D000484 1.6e-06 58.9 82 45.1
Sabra18G0049100 Salix brachista HOM05D000239 ORTHO05D000484 2.7e-06 58.2 74 45.9
CiPaw.16G028800 Carya illinoinensis HOM05D000239 ORTHO05D000484 3.5e-06 57.8 70 48.6
TWI34G0580 Tripterygium wilfordii HOM05D000239 ORTHO05D000484 4.5e-06 57.4 72 47.2
Cpa.g.sc7.171 Carica papaya HOM05D000239 ORTHO05D000484 7.7e-06 56.6 62 51.6


User provided reference genes

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