Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06492 Brassica carinata HOM05D001363 ORTHO05D006255 4.5e-141 504.6 258 100.0
C03p14990 Brassica napus HOM05D001363 ORTHO05D006255 6.2e-90 334.7 278 69.1
BcaC01g06488 Brassica carinata HOM05D001363 ORTHO05D006255 8.1e-90 334.3 279 69.5
BcaC01g06495 Brassica carinata HOM05D001363 ORTHO05D006255 1.8e-89 333.2 260 73.5
BolC3t13941H Brassica oleracea HOM05D001363 ORTHO05D006255 5.8e-88 328.2 280 69.6
A03p12830 Brassica napus HOM05D001363 ORTHO05D006255 4.1e-86 322.0 280 67.9
BraA03t10591Z Brassica rapa HOM05D001363 ORTHO05D006255 2.1e-85 319.7 280 67.5
Sp6g19160 Schrenkiella parvula HOM05D001363 ORTHO05D006255 4.7e-82 308.5 278 64.0
CARHR271240 Cardamine hirsuta HOM05D001363 ORTHO05D006255 1.5e-80 303.5 278 63.7
Thhalv10015458m.g Eutrema salsugineum HOM05D001363 ORTHO05D006255 2.3e-76 289.7 278 61.9
AT5G57450 Arabidopsis thaliana HOM05D001363 ORTHO05D006255 1.8e-73 280.0 278 60.1
Aa31LG3G13330 Aethionema arabicum HOM05D001363 ORTHO05D006255 6.9e-73 278.1 278 59.4
THA.LOC104813524 Tarenaya hassleriana HOM05D001363 ORTHO05D006255 2.4e-62 243.0 247 58.3
Atru.chr7.643 Acer truncatum HOM05D001363 ORTHO05D006255 1.2e-53 214.2 279 46.2
Ciclev10008928m.g Citrus clementina HOM05D001363 ORTHO05D006255 1.1e-51 207.6 286 47.2
Actinidia38636 Actinidia chinensis HOM05D001363 ORTHO05D006255 3.3e-51 206.1 278 46.8
Thecc.09G173000 Theobroma cacao HOM05D001363 ORTHO05D006255 3.3e-51 206.1 278 47.8
QL02p097661 Quercus lobata HOM05D001363 ORTHO05D006255 1.3e-50 204.1 280 47.5
Haze_22100 Corylus avellana HOM05D001363 ORTHO05D006255 2.8e-50 203.0 275 45.8
Cfa013508 Carpinus fangiana HOM05D001363 ORTHO05D006255 6.3e-50 201.8 275 45.5
Gohir.A05G004600 Gossypium hirsutum HOM05D001363 ORTHO05D006255 1.3e-47 194.1 278 45.7
CiPaw.08G036500 Carya illinoinensis HOM05D001363 ORTHO05D006255 2.9e-47 193.0 276 44.2
Gohir.D05G005500 Gossypium hirsutum HOM05D001363 ORTHO05D006255 3.8e-47 192.6 278 45.3
Gorai.009G005300 Gossypium raimondii HOM05D001363 ORTHO05D006255 3.8e-47 192.6 278 45.3
FAN07G0609 Fragaria x ananassa HOM05D001363 ORTHO05D006255 5.0e-47 192.2 266 48.1
MD06G1167000 Malus domestica HOM05D001363 ORTHO05D006255 6.5e-47 191.8 278 43.5
Manes.01G004820 Manihot esculenta HOM05D001363 ORTHO05D006255 8.4e-47 191.4 288 45.1
Cpa.g.sc95.51 Carica papaya HOM05D001363 ORTHO05D006255 1.4e-46 190.7 251 47.8
Nn2g12720 Nelumbo nucifera HOM05D001363 ORTHO05D006255 1.4e-46 190.7 266 45.5
FvH4_4g08251 Fragaria vesca HOM05D001363 ORTHO05D006255 3.2e-46 189.5 266 47.7
Eucgr.C00157 Eucalyptus grandis HOM05D001363 ORTHO05D006255 9.3e-46 188.0 278 42.1
ClCG11G012170 Citrullus lanatus HOM05D001363 ORTHO05D006255 2.1e-45 186.8 278 45.0
MELO3C004027.2 Cucumis melo HOM05D001363 ORTHO05D006255 2.7e-45 186.4 279 45.5
Dinv41718 Davidia involucrata HOM05D001694 ORTHO05D000248 2.7e-45 186.4 280 41.8
Sed0007175 Sechium edule HOM05D001363 ORTHO05D006255 3.5e-45 186.0 276 47.1
TAR625G1447 Trochodendron aralioides HOM05D001363 ORTHO05D006255 6.1e-45 185.3 267 43.8
Rhsim03G0264200 Rhododendron simsii HOM05D001363 ORTHO05D006255 7.9e-45 184.9 277 43.3
PGR142G0790 Punica granatum HOM05D001363 ORTHO05D006255 1.0e-44 184.5 279 44.8
CANSAT11G0841 Cannabis sativa HOM05D001363 ORTHO05D006255 1.8e-44 183.7 274 44.9
CsaV3_2G008370 Cucumis sativus L. HOM05D001363 ORTHO05D006255 1.8e-44 183.7 279 45.2
TWI34G1409 Tripterygium wilfordii HOM05D001363 ORTHO05D006255 1.8e-44 183.7 276 43.1
RcHm_v2.0_Chr4g0402491 Rosa chinensis HOM05D001363 ORTHO05D006255 2.3e-44 183.3 278 44.2
SHI41748 Sapria himalayana HOM05D001363 ORTHO05D006255 3.0e-44 183.0 280 42.9
MD14G1172600 Malus domestica HOM05D001363 ORTHO05D006255 3.9e-44 182.6 278 42.8
Potri.018G093100 Populus trichocarpa HOM05D001363 ORTHO05D006255 5.1e-44 182.2 267 44.6
Aqoxy2G00910 Aquilegia oxysepala HOM05D001363 ORTHO05D006255 8.7e-44 181.4 280 43.2
CSS0044369 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D006255 1.5e-43 180.6 284 42.3
BcaB01g04460 Brassica carinata HOM05D001363 ORTHO05D006255 1.9e-43 180.3 152 70.4
arahy.Tifrunner.gnm1.ann1.YA5C6P Arachis hypogaea HOM05D001363 ORTHO05D006255 2.5e-43 179.9 279 44.8
vmacro06016 Vaccinium macrocarpon HOM05D001363 ORTHO05D006255 7.4e-43 178.3 275 41.5
Sabra18G0080300 Salix brachista HOM05D001363 ORTHO05D006255 9.7e-43 177.9 247 44.9
arahy.Tifrunner.gnm1.ann1.2PT66T Arachis hypogaea HOM05D001363 ORTHO05D006255 1.6e-42 177.2 279 44.4
EL10Ac4g08144 Beta vulgaris HOM05D001363 ORTHO05D006255 2.8e-42 176.4 282 44.0
AUR62034263 Chenopodium quinoa HOM05D001363 ORTHO05D006255 2.8e-42 176.4 286 43.7
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 4.8e-42 175.6 286 42.7
Sc08g0005330 Simmondsia chinensis HOM05D001363 ORTHO05D006255 6.9e-41 171.8 282 42.2
Lj9P685T22 Lonicera japonica HOM05D001363 ORTHO05D006255 9.0e-41 171.4 274 40.5
VMungo1383G3248 Vigna mungo HOM05D001363 ORTHO05D006255 3.8e-39 166.0 255 45.5
Cc06_g13270 Coffea canephora HOM05D001363 ORTHO05D006255 3.2e-38 162.9 251 44.2
Hund26352 Selenicereus undatus HOM05D001363 ORTHO05D006255 9.4e-38 161.4 257 42.8
Glyma.18G288200 Glycine max HOM05D001363 ORTHO05D006255 2.7e-37 159.8 248 44.0
Lsat_1_v5_gn_8_66820 Lactuca sativa HOM05D001363 ORTHO05D006255 3.6e-37 159.5 277 39.7
HanXRQChr05g0143031 Helianthus annuus HOM05D001363 ORTHO05D006255 6.1e-37 158.7 261 41.8
ECA236G4924 Erigeron canadensis HOM05D001363 ORTHO05D006255 1.0e-36 157.9 281 39.1
PSO339G0974 Papaver somniferum HOM05D000001 ORTHO05D006255 1.0e-36 157.9 290 39.7
ATR0580G043 Amborella trichopoda HOM05D001363 ORTHO05D006255 1.4e-36 157.5 277 39.7
Ca_12655_v3 Cicer arietinum L. HOM05D001363 ORTHO05D006255 1.4e-36 157.5 235 44.7
Phvul.008G013800 Phaseolus vulgaris HOM05D001363 ORTHO05D006255 1.8e-36 157.1 248 43.1
Psat1g024320 Pisum sativum HOM05D001363 ORTHO05D006255 6.7e-36 155.2 256 42.6
DCAR_014703 Daucus carota HOM05D001363 ORTHO05D006255 1.1e-35 154.5 265 39.6
PGSC0003DMG400020439 Solanum tuberosum HOM05D001363 ORTHO05D006255 1.1e-35 154.5 252 42.5
MBI14_g17365_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D006255 1.5e-35 154.1 269 42.0
PSO801G0379 Papaver somniferum HOM05D001363 ORTHO05D006255 7.4e-35 151.8 250 42.0
Oeu056514.1 Olea europaea HOM05D001363 ORTHO05D006255 9.7e-35 151.4 277 40.1
Lj6g0018832 Lotus japonicus HOM05D001363 ORTHO05D006255 2.8e-34 149.8 241 42.7
Oeu002544.1 Olea europaea HOM05D001363 ORTHO05D006255 1.4e-33 147.5 253 41.9
Sopen07g027050 Solanum pennellii HOM05D000134 ORTHO05D003318 2.4e-33 146.7 279 39.8
MSTRG.19704 Avicennia marina HOM05D001363 ORTHO05D006255 5.3e-33 145.6 252 42.5
Medtr2g445230 Medicago truncatula HOM05D001363 ORTHO05D006255 6.9e-33 145.2 232 43.5
Solyc07g055170.1 Solanum lycopersicum HOM05D001363 ORTHO05D006255 6.9e-33 145.2 275 40.4
Peaxi162Scf00113g00112 Petunia axillaris HOM05D001363 ORTHO05D006255 9.1e-33 144.8 265 41.1
SalBow6G0285 Salvia bowleyana HOM05D001363 ORTHO05D006255 1.5e-32 144.1 281 39.1
Migut.J01476 Erythranthe guttata HOM05D001363 ORTHO05D006255 2.0e-32 143.7 250 42.4
COL.COLO4_30985 Corchorus olitorius HOM05D001363 ORTHO05D006255 2.9e-31 139.8 174 51.7
GSVIVG01029206001 Vitis vinifera HOM05D001363 ORTHO05D006255 2.9e-31 139.8 277 38.6
Peaxi162Scf00276g00065 Petunia axillaris HOM05D001363 ORTHO05D006255 3.8e-31 139.4 262 39.7
SGA_v2.0_scaffold66G22453 Striga asiatica HOM05D001363 ORTHO05D006255 1.9e-30 137.1 246 41.5
Carub.0008s1796 Capsella rubella HOM05D001363 ORTHO05D006255 2.5e-30 136.7 138 61.6
CAN.G1081.7 Capsicum annuum HOM05D001363 ORTHO05D006255 2.3e-28 130.2 234 39.3
CSS0019343 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D006255 1.1e-27 127.9 222 39.6
unitig_0.g574 Utricularia gibba HOM05D001363 ORTHO05D006255 1.5e-27 127.5 238 37.4
TPR.G9532 Trifolium pratense HOM05D001363 ORTHO05D006255 1.7e-26 124.0 230 38.3
HPP92_010750 Vanilla planifolia HOM05D001363 ORTHO05D006255 1.1e-25 121.3 276 34.4
Zm00001eb243950 Zea mays HOM05D001363 ORTHO05D006255 2.4e-25 120.2 265 35.8
Mapoly0009s0225 Marchantia polymorpha HOM05D001363 ORTHO05D006255 9.1e-25 118.2 301 32.2
Os02g0562100 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D006255 2.0e-24 117.1 252 35.7
Prupe.1G061700 Prunus persica HOM05D001363 ORTHO05D006255 4.5e-24 115.9 170 41.2
CBR_g28512 Chara braunii HOM05D001363 ORTHO05D006255 1.5e-22 110.9 319 30.1
SalBow3G2802 Salvia bowleyana HOM05D001363 ORTHO05D006255 1.8e-20 104.0 264 31.8
SEGI_22217 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.4e-17 94.4 235 29.4
EL10Ac9g22685 Beta vulgaris HOM05D014025 ORTHO05D006255 7.0e-17 92.0 259 28.6
EL10Ac8g19301 Beta vulgaris HOM05D001363 ORTHO05D006255 1.6e-16 90.9 228 31.6
RcHm_v2.0_Chr4g0402521 Rosa chinensis HOM05D001363 ORTHO05D006255 2.7e-16 90.1 67 65.7
EL10Ac9g22649 Beta vulgaris HOM05D001363 ORTHO05D006255 1.0e-15 88.2 224 29.9
SalBow1G6812 Salvia bowleyana HOM05D001363 ORTHO05D006255 1.0e-15 88.2 228 32.5
EL10Ac3g06723 Beta vulgaris HOM05D001363 ORTHO05D006255 6.5e-15 85.5 235 30.2
SMO270G0051 Selaginella moellendorffii HOM05D027465 ORTHO05D006255 6.5e-15 85.5 112 40.2
VMungo1309G0399 Vigna mungo HOM05D001363 ORTHO05D006255 1.1e-14 84.7 164 38.4
MCO13G404 Micromonas commoda HOM05D001363 ORTHO05D006255 2.5e-14 83.6 290 30.3
Manes.01G004910 Manihot esculenta HOM05D001363 ORTHO05D006255 1.6e-13 80.9 140 38.6
VMungo1080G0746 Vigna mungo HOM05D001363 ORTHO05D006255 5.7e-11 72.4 133 38.3
SalBow7G1126 Salvia bowleyana HOM05D001363 ORTHO05D006255 7.5e-11 72.0 167 31.7
AagrBONN_evm.TU.Sc2ySwM_228.390 Anthoceros agrestis HOM05D007197 ORTHO05D009064 4.8e-10 69.3 241 27.4
BcaB01g04459 Brassica carinata HOM05D001363 ORTHO05D092939 1.8e-09 67.4 31 100.0
Lalb_Chr11g0072311 Lupinus albus HOM05D001363 ORTHO05D006255 1.8e-09 67.4 234 26.9
EL10Ac7g15946 Beta vulgaris HOM05D014025 ORTHO05D006255 2.0e-08 63.9 154 28.6
EL10Ac1g01763 Beta vulgaris HOM05D001363 ORTHO05D006255 3.5e-08 63.2 121 31.4
Glyma.11G143900 Glycine max HOM05D007197 ORTHO05D009064 4.5e-08 62.8 214 26.6
EL10Ac2g02973 Beta vulgaris HOM05D008320 ORTHO05D012961 7.7e-08 62.0 138 30.4
EL10Ac4g08201 Beta vulgaris HOM05D001363 ORTHO05D006255 7.7e-08 62.0 135 28.9
EL10Ac1g01702 Beta vulgaris HOM05D001363 ORTHO05D006255 1.3e-07 61.2 174 28.7
EL10Ac4g09496 Beta vulgaris HOM05D001363 ORTHO05D006255 1.7e-07 60.8 174 29.3
EL10Ac7g18135 Beta vulgaris HOM05D014025 ORTHO05D006255 8.5e-07 58.5 156 26.9
FAN11G2804 Fragaria x ananassa HOM05D007197 ORTHO05D009064 8.5e-07 58.5 205 27.8
EL10Ac3g06329 Beta vulgaris HOM05D001363 ORTHO05D006255 1.5e-06 57.8 88 36.4
MD11G1115100 Malus domestica HOM05D007197 ORTHO05D009064 1.9e-06 57.4 239 28.0
SalBow8G0534 Salvia bowleyana HOM05D001363 ORTHO05D006255 2.5e-06 57.0 119 34.5
SalBow3G2957 Salvia bowleyana HOM05D001363 ORTHO05D006255 3.2e-06 56.6 133 33.8
Thecc.09G328900 Theobroma cacao HOM05D007197 ORTHO05D009064 3.2e-06 56.6 217 27.2
SalBow3G3288 Salvia bowleyana HOM05D001363 ORTHO05D006255 4.2e-06 56.2 133 32.3
SalBow4G0640 Salvia bowleyana HOM05D001363 ORTHO05D006255 4.2e-06 56.2 134 29.1
THA.LOC104800640 Tarenaya hassleriana HOM05D007197 ORTHO05D009064 4.2e-06 56.2 210 28.6
COL.COLO4_15236 Corchorus olitorius HOM05D007197 ORTHO05D009064 5.5e-06 55.8 242 26.4
GSVIVG01025047001 Vitis vinifera HOM05D007197 ORTHO05D009064 5.5e-06 55.8 223 27.4
Cfa011437 Carpinus fangiana HOM05D007197 ORTHO05D009064 7.2e-06 55.5 210 29.5
Dinv32855 Davidia involucrata HOM05D007197 ORTHO05D009064 7.2e-06 55.5 216 28.7
Prupe.6G086100 Prunus persica HOM05D007197 ORTHO05D009064 7.2e-06 55.5 208 26.4
Cre14.g622850 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D002212 9.4e-06 55.1 172 25.6
Medtr4g062540 Medicago truncatula HOM05D007197 ORTHO05D009064 9.4e-06 55.1 207 25.6


User provided reference genes

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