Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 3.5e-95 351.7 183 100.0
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 3.5e-95 351.7 183 100.0
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 3.5e-95 351.7 183 100.0
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 7.7e-95 350.5 183 99.5
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 1.7e-89 332.8 174 99.4
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 1.7e-89 332.8 174 99.4
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 4.8e-89 331.3 174 98.9
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 5.9e-87 324.3 176 96.6
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.3e-86 322.4 174 96.6
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 6.5e-86 320.9 174 96.6
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 8.6e-86 320.5 174 95.4
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.1e-85 320.1 174 96.0
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.2e-82 310.1 175 93.7
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.3e-81 306.6 174 93.7
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.2e-76 290.0 174 87.4
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 4.4e-74 281.6 172 86.6
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 1.3e-73 280.0 174 86.8
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 1.3e-73 280.0 172 85.5
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.3e-73 280.0 206 76.2
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 2.2e-73 279.3 182 80.8
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 3.7e-73 278.5 175 84.0
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 6.4e-73 277.7 182 80.8
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 8.3e-73 277.3 172 86.0
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 1.4e-72 276.6 182 80.2
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.4e-72 276.6 172 85.5
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 1.4e-72 276.6 172 85.5
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 1.8e-72 276.2 172 85.5
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 2.4e-72 275.8 182 79.1
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 4.1e-72 275.0 172 84.9
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 5.4e-72 274.6 172 84.3
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 1.2e-71 273.5 182 79.1
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 1.2e-71 273.5 172 84.3
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.6e-71 273.1 182 78.0
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 2.0e-71 272.7 182 78.0
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 2.0e-71 272.7 172 84.3
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 3.5e-71 271.9 172 83.7
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 3.5e-71 271.9 172 84.3
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 3.5e-71 271.9 172 84.3
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 4.6e-71 271.6 174 82.8
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 7.8e-71 270.8 172 82.6
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 1.0e-70 270.4 172 83.7
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 2.3e-70 269.2 180 79.4
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.3e-70 269.2 172 82.6
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 2.3e-70 269.2 182 77.5
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 2.3e-70 269.2 182 80.2
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 3.0e-70 268.9 172 82.0
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 3.0e-70 268.9 184 77.7
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 3.0e-70 268.9 182 78.6
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 3.0e-70 268.9 182 78.6
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 3.9e-70 268.5 182 78.0
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.0e-70 268.1 182 78.0
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 6.6e-70 267.7 172 82.0
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 8.6e-70 267.3 174 81.0
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 8.6e-70 267.3 182 79.1
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.1e-69 266.9 174 81.0
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.1e-69 266.9 172 82.6
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 1.5e-69 266.5 172 82.6
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.9e-69 266.2 183 77.0
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 2.5e-69 265.8 174 80.5
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 2.5e-69 265.8 182 76.9
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 4.3e-69 265.0 172 82.0
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 4.3e-69 265.0 172 82.0
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 7.3e-69 264.2 182 76.4
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 7.3e-69 264.2 183 76.5
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 9.5e-69 263.8 172 80.8
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 9.5e-69 263.8 184 76.6
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 1.6e-68 263.1 172 81.4
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 2.1e-68 262.7 179 78.2
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 2.8e-68 262.3 172 82.6
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.6e-68 261.9 174 81.0
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 4.7e-68 261.5 172 82.0
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 4.7e-68 261.5 172 80.8
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 8.0e-68 260.8 174 80.5
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 8.0e-68 260.8 183 77.6
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 8.0e-68 260.8 182 76.9
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.1e-67 260.4 183 78.1
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 1.4e-67 260.0 178 76.4
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 1.4e-67 260.0 172 80.8
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 1.8e-67 259.6 182 74.7
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 2.3e-67 259.2 181 76.2
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 2.3e-67 259.2 172 80.2
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 2.3e-67 259.2 175 80.0
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 2.3e-67 259.2 174 79.9
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.0e-67 258.5 172 77.9
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 4.0e-67 258.5 172 80.2
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 6.8e-67 257.7 161 85.1
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.2e-66 256.9 167 82.0
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 1.5e-66 256.5 172 78.5
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 1.5e-66 256.5 182 76.4
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 2.0e-66 256.1 182 73.6
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.6e-66 255.8 174 79.3
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 4.4e-66 255.0 174 77.6
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 4.4e-66 255.0 182 75.3
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 4.4e-66 255.0 165 82.4
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 9.8e-66 253.8 174 78.2
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 2.2e-65 252.7 181 74.0
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.9e-65 252.3 159 83.0
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 2.9e-65 252.3 162 81.5
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 6.4e-65 251.1 174 77.6
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 6.4e-65 251.1 183 75.4
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 6.4e-65 251.1 164 81.1
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 8.3e-65 250.8 174 77.6
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 8.3e-65 250.8 161 82.6
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 1.9e-64 249.6 174 77.0
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 1.9e-64 249.6 174 77.0
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 1.9e-64 249.6 174 77.0
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 1.9e-64 249.6 174 77.0
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 4.1e-64 248.4 174 76.4
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 3.5e-63 245.4 178 73.6
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 3.5e-63 245.4 182 70.9
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 6.0e-63 244.6 172 75.6
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 3.3e-61 238.8 175 74.3
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.3e-61 238.4 159 78.0
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 4.3e-61 238.4 181 70.7
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.1e-59 233.8 182 69.2
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 4.0e-59 231.9 174 73.6
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 2.1e-55 219.5 174 72.4
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 7.8e-55 217.6 159 74.2
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 2.5e-53 212.6 175 65.1
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 2.1e-52 209.5 172 68.0
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.4e-51 206.8 168 67.9
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.8e-51 206.5 156 71.8
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.9e-51 204.1 174 63.2
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 4.1e-48 195.3 176 63.1
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.0e-47 191.4 170 61.2
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 6.6e-46 188.0 121 77.7
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 8.7e-46 187.6 160 66.9
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 8.1e-44 181.0 166 59.0
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 2.6e-42 176.0 166 57.2
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 8.4e-41 171.0 125 72.8
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 8.4e-41 171.0 118 78.0
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.9e-40 169.9 159 60.4
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.2e-39 167.2 123 69.9
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 5.1e-38 161.8 129 73.6
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 1.5e-37 160.2 167 56.3
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 9.6e-37 157.5 175 54.3
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.1e-35 152.5 139 60.4
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 1.2e-34 150.6 93 79.6
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.2e-31 140.6 110 68.2
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 1.8e-30 136.7 97 74.2
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 8.7e-30 134.4 101 72.3
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.5e-29 133.7 101 69.3
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 2.8e-28 129.4 185 47.0
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 4.0e-27 125.6 81 85.2
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.1e-24 117.5 130 58.5
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-21 107.5 93 66.7
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 3.3e-21 105.9 56 91.1
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.9e-17 92.8 56 78.6
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 8.4e-17 91.3 58 87.9
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 1.9e-16 90.1 76 64.5
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 3.3e-13 79.3 58 65.5
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 4.3e-13 79.0 51 86.3
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 7.4e-13 78.2 57 73.7
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.2e-10 70.9 54 68.5
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 5.5e-08 62.0 38 89.5
BolC2t07549H Brassica oleracea HOM05D004327 ORTHO05D032179 4.6e-07 58.9 76 56.6
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 1.0e-06 57.8 31 83.9


User provided reference genes

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