Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 2.9e-75 285.4 176 100.0
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 5.5e-74 281.2 174 100.0
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 1.5e-71 273.1 172 99.4
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 2.2e-70 269.2 172 98.3
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 4.5e-68 261.5 174 85.6
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 8.6e-67 257.3 172 85.5
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 2.8e-62 242.3 171 87.1
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.8e-53 213.0 184 72.8
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.5e-50 203.4 193 66.8
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 5.6e-50 201.4 172 64.5
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 1.2e-49 200.3 191 62.3
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 1.2e-49 200.3 191 62.3
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 2.1e-49 199.5 178 64.6
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 1.8e-48 196.4 169 76.3
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 2.3e-48 196.1 186 66.7
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 4.0e-48 195.3 183 68.3
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 4.0e-48 195.3 188 66.0
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 2.6e-47 192.6 186 65.6
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 2.0e-44 183.0 190 57.9
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 3.5e-44 182.2 177 59.9
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 2.3e-43 179.5 173 60.7
Carub.0008s1748 Capsella rubella HOM05D003238 ORTHO05D003571 8.6e-43 177.6 177 71.8
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 7.3e-42 174.5 185 61.6
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 2.1e-41 172.9 177 71.2
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.2e-39 167.2 178 66.9
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 7.3e-34 147.9 177 51.4
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.5e-18 97.1 183 42.6
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 7.3e-18 94.7 177 44.6
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.3e-17 94.0 187 42.8
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.3e-17 94.0 187 42.8
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 4.0e-16 89.0 161 37.3
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 4.0e-16 89.0 161 37.3
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 9.0e-16 87.8 161 42.2
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.0e-11 74.3 158 39.2
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.5e-10 70.5 163 38.7
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.5e-10 70.5 161 40.4
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.9e-10 70.1 143 35.0
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 2.5e-10 69.7 125 36.8
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.4e-10 68.2 207 28.5
Aa31LG3G12880 Aethionema arabicum HOM05D003238 ORTHO05D003571 1.3e-09 67.4 52 65.4
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.3e-09 67.4 151 34.4
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.6e-09 67.0 157 41.4
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.1e-09 66.6 214 34.1
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 2.1e-09 66.6 210 29.0
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.1e-09 64.7 207 28.5
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 8.1e-09 64.7 160 40.0
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-08 64.3 207 28.5
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.4e-08 63.9 225 27.6
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 2.4e-08 63.2 133 33.1
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 3.1e-08 62.8 163 35.0
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 6.9e-08 61.6 227 33.9
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 9.0e-08 61.2 220 26.4
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 9.0e-08 61.2 143 42.0
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 2.0e-07 60.1 115 36.5
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.0e-07 60.1 216 25.9
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 2.0e-07 60.1 121 32.2
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 3.4e-07 59.3 125 34.4
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 4.5e-07 58.9 129 31.0
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 5.8e-07 58.5 130 36.9
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 7.6e-07 58.2 152 38.8
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.6e-07 58.2 127 44.9
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.7e-06 57.0 144 37.5
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.2e-06 56.6 127 43.3
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 3.8e-06 55.8 157 38.2
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 4.9e-06 55.5 119 43.7
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 4.9e-06 55.5 220 32.3
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 4.9e-06 55.5 95 37.9
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 8.4e-06 54.7 157 37.6
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 8.4e-06 54.7 180 28.9


User provided reference genes

Program Settings