Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 1.1e-122 443.4 224 100.0
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 2.8e-46 189.5 159 66.7
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 3.6e-46 189.1 159 66.0
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.6e-38 163.7 99 83.8
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 3.6e-38 162.5 137 68.6
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 1.8e-37 160.2 136 67.6
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 1.8e-37 160.2 137 67.2
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 5.3e-37 158.7 136 66.9
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 6.9e-37 158.3 135 67.4
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 9.0e-37 157.9 135 67.4
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.2e-36 157.5 137 65.0
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 2.6e-36 156.4 137 64.2
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 3.8e-35 152.5 137 62.8
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 1.4e-34 150.6 177 53.7
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.9e-34 150.2 137 61.3
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.9e-34 150.2 137 61.3
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 3.5e-33 146.0 131 64.1
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 1.0e-32 144.4 137 59.9
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 2.1e-30 136.7 137 55.5
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 4.8e-30 135.6 86 83.7
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 8.1e-30 134.8 137 56.9
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 1.1e-29 134.4 137 56.2
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 1.4e-29 134.0 137 56.2
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 2.4e-29 133.3 137 56.2
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 3.1e-29 132.9 137 54.7
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 3.1e-29 132.9 136 55.9
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 3.1e-29 132.9 137 56.2
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 4.0e-29 132.5 137 55.5
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 9.0e-29 131.3 136 56.6
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 1.5e-28 130.6 137 55.5
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 2.0e-28 130.2 137 54.7
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 2.6e-28 129.8 137 55.5
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 2.6e-28 129.8 137 56.2
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 2.6e-28 129.8 137 54.7
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 3.4e-28 129.4 137 54.0
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 4.5e-28 129.0 137 54.7
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 5.8e-28 128.6 139 53.2
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 5.8e-28 128.6 140 55.7
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 7.6e-28 128.3 137 54.0
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 7.6e-28 128.3 139 55.4
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 7.6e-28 128.3 137 51.8
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 7.6e-28 128.3 137 53.3
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.0e-27 127.9 137 53.3
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 1.0e-27 127.9 137 52.6
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 1.3e-27 127.5 137 54.0
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.3e-27 127.5 136 53.7
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.3e-27 127.5 137 53.3
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.7e-27 127.1 137 54.7
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 2.9e-27 126.3 137 54.7
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 3.8e-27 125.9 139 52.5
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 3.8e-27 125.9 137 53.3
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 6.5e-27 125.2 137 52.6
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 6.5e-27 125.2 137 51.1
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 6.5e-27 125.2 137 51.8
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 6.5e-27 125.2 144 50.0
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 6.5e-27 125.2 148 51.4
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 8.4e-27 124.8 137 53.3
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 1.1e-26 124.4 137 52.6
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 1.1e-26 124.4 137 53.3
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 1.9e-26 123.6 137 53.3
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.9e-26 123.6 136 53.7
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 1.9e-26 123.6 138 52.9
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.9e-26 123.6 137 53.3
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.9e-26 123.6 133 53.4
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 1.9e-26 123.6 137 51.8
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.5e-26 123.2 144 50.7
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 3.2e-26 122.9 137 52.6
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 3.2e-26 122.9 137 52.6
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 3.2e-26 122.9 137 51.8
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 3.2e-26 122.9 136 54.4
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 4.2e-26 122.5 136 52.9
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 5.5e-26 122.1 137 51.1
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 5.5e-26 122.1 137 52.6
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 5.5e-26 122.1 137 52.6
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 5.5e-26 122.1 137 50.4
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 7.1e-26 121.7 142 51.4
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 7.1e-26 121.7 135 51.1
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 7.1e-26 121.7 137 50.4
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.2e-25 120.9 136 52.9
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 1.2e-25 120.9 136 51.5
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 2.1e-25 120.2 137 50.4
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 2.1e-25 120.2 137 51.1
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 4.6e-25 119.0 99 66.7
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.0e-24 117.9 137 50.4
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 1.0e-24 117.9 102 61.8
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 1.0e-24 117.9 137 51.1
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.8e-24 117.1 137 51.8
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 3.9e-24 115.9 137 51.1
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-23 114.4 94 69.1
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 1.9e-23 113.6 137 49.6
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 2.5e-23 113.2 158 45.6
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 3.3e-23 112.8 137 50.4
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.7e-23 112.1 162 44.4
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 5.7e-23 112.1 98 61.2
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.4e-23 111.7 98 60.2
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.4e-23 111.7 98 60.2
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 7.4e-23 111.7 98 60.2
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 9.6e-23 111.3 103 58.3
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 1.3e-22 110.9 147 47.6
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 1.3e-22 110.9 98 60.2
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 2.1e-22 110.2 138 47.8
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 2.8e-22 109.8 100 57.0
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 4.8e-22 109.0 123 56.1
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.8e-22 109.0 103 62.1
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.8e-22 109.0 175 41.7
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 6.3e-22 108.6 94 66.0
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 8.2e-22 108.2 126 50.8
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.4e-21 107.5 136 48.5
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.4e-21 106.7 136 47.8
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 3.1e-21 106.3 87 67.8
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.1e-21 106.3 136 48.5
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.1e-21 106.3 136 48.5
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.1e-21 106.3 136 48.5
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 5.3e-21 105.5 98 57.1
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.5e-20 104.0 137 47.4
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-18 97.8 154 45.5
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 3.0e-16 89.7 76 65.8
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 2.5e-10 70.1 50 70.0
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 1.2e-09 67.8 50 68.0
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 2.1e-09 67.0 51 70.6
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 4.8e-06 55.8 66 50.0


User provided reference genes

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