Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1502.3 761 100.0
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 0.0e+00 1481.8 761 99.1
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1436.0 764 96.5
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1271.9 773 87.5
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 0.0e+00 1250.3 773 86.5
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1165.6 773 82.5
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.4e-277 958.4 826 67.4
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 8.0e-271 937.2 828 67.8
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.5e-250 868.6 831 63.8
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 7.8e-234 814.3 825 62.2
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 4.6e-226 788.5 826 59.8
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.3e-225 786.9 830 60.8
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 6.0e-218 761.5 763 62.4
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 6.7e-217 758.1 795 60.3
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 7.2e-203 711.4 756 58.3
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 7.4e-200 701.4 762 57.7
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 1.0e-196 691.0 759 57.2
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 3.2e-187 659.4 783 54.2
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 7.8e-157 558.5 709 52.5
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-151 541.2 708 51.6
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 5.1e-132 476.1 712 49.0
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 4.2e-110 403.3 977 39.0
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 6.0e-109 399.4 990 38.6
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.3e-106 391.7 970 38.4
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.6e-106 391.3 959 36.7
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 6.2e-106 389.4 997 36.2
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 5.3e-105 386.3 934 37.6
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 3.8e-95 353.6 956 35.0
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 3.8e-95 353.6 956 35.0
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 5.0e-95 353.2 986 36.9
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.5e-93 347.1 856 39.6
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 3.3e-91 340.5 943 35.5
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 8.2e-90 335.9 1007 35.5
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 8.2e-90 335.9 936 35.3
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 2.0e-88 331.3 899 36.2
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 5.9e-88 329.7 923 36.4
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 5.9e-88 329.7 940 34.8
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 1.0e-87 328.9 919 35.7
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 6.7e-84 316.2 950 34.3
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 6.7e-84 316.2 950 34.3
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 8.8e-84 315.8 828 35.9
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-83 315.1 930 35.8
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.4e-81 308.5 986 33.5
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 3.4e-80 303.9 941 34.4
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 3.8e-79 300.4 975 33.5
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 4.7e-77 293.5 960 33.4
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.9e-76 290.4 836 36.0
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.4e-59 234.2 196 66.3
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 1.6e-53 215.3 189 67.7
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.1e-46 192.6 935 27.7
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 3.4e-43 181.0 731 30.6
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.7e-43 180.3 379 37.7
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 1.3e-42 179.1 857 27.1
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 1.7e-42 178.7 348 37.6
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.2e-42 178.3 958 26.5
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.7e-42 177.6 392 36.5
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 4.1e-41 174.1 380 36.3
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 5.9e-40 170.2 389 34.4
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 1.0e-39 169.5 430 33.3
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 1.0e-39 169.5 373 36.7
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.0e-39 169.5 418 34.4
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 2.3e-39 168.3 386 33.9
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 5.0e-39 167.2 430 32.3
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 8.6e-39 166.4 438 34.9
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.9e-38 165.2 409 35.2
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 1.9e-38 165.2 437 33.0
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 3.3e-38 164.5 374 34.5
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 5.6e-38 163.7 357 37.3
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.6e-38 163.7 378 36.0
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 7.3e-38 163.3 421 34.0
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 9.5e-38 162.9 375 36.3
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 1.2e-37 162.5 381 35.2
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.6e-37 162.2 378 36.8
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 1.6e-37 162.2 412 36.4
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.6e-37 161.0 378 35.2
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 4.7e-37 160.6 395 33.4
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 4.7e-37 160.6 395 33.4
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 4.7e-37 160.6 348 37.4
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 6.2e-37 160.2 476 33.0
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 6.2e-37 160.2 365 35.6
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 8.0e-37 159.8 432 34.3
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 8.0e-37 159.8 449 32.5
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.0e-36 159.5 397 33.8
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 1.4e-36 159.1 886 26.5
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 3.1e-36 157.9 901 27.0
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 8.9e-36 156.4 460 32.2
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 1.2e-35 156.0 345 35.7
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.2e-35 156.0 390 35.1
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 1.5e-35 155.6 461 33.2
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 2.0e-35 155.2 433 32.1
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 2.6e-35 154.8 411 33.8
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.4e-35 154.5 466 34.1
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 4.4e-35 154.1 389 32.9
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 4.4e-35 154.1 389 32.9
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 5.8e-35 153.7 389 34.7
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 9.8e-35 152.9 458 33.2
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.3e-34 152.5 570 29.3
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.3e-34 152.5 466 32.4
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.7e-34 152.1 372 33.9
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 3.7e-34 151.0 365 33.2
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.7e-34 151.0 491 32.0
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 3.7e-34 151.0 375 33.9
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 4.9e-34 150.6 491 31.8
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.9e-34 150.6 491 31.8
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 4.9e-34 150.6 423 34.3
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.1e-33 149.4 891 26.2
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.4e-33 149.1 378 33.6
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.4e-33 148.3 453 32.5
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 2.4e-33 148.3 329 37.1
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 3.2e-33 147.9 426 33.6
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 7.0e-33 146.7 430 32.1
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 7.0e-33 146.7 458 30.1
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.6e-32 145.6 422 33.6
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 2.0e-32 145.2 359 34.5
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 2.7e-32 144.8 435 31.7
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 4.6e-32 144.1 413 32.9
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 6.0e-32 143.7 368 33.7
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 6.0e-32 143.7 340 35.6
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 7.8e-32 143.3 363 33.9
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 1.3e-31 142.5 339 33.6
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.3e-31 142.5 363 35.0
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 1.7e-31 142.1 440 31.1
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 1.7e-31 142.1 392 34.7
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 3.0e-31 141.4 392 34.4
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 3.9e-31 141.0 391 34.5
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 5.0e-31 140.6 453 32.0
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 6.6e-31 140.2 792 26.5
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 2.5e-30 138.3 742 26.8
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 4.3e-30 137.5 403 31.8
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 5.6e-30 137.1 395 34.9
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 5.6e-30 137.1 410 33.2
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 7.3e-30 136.7 370 30.5
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.2e-29 136.0 705 28.2
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.2e-29 136.0 778 26.3
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.2e-29 136.0 414 29.7
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.1e-29 135.2 485 29.7
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 2.1e-29 135.2 791 26.2
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 8.1e-29 133.3 388 31.2
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 1.1e-28 132.9 482 30.9
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 3.1e-28 131.3 419 30.1
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 5.2e-28 130.6 439 30.8
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 8.9e-28 129.8 402 31.8
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.5e-27 129.0 397 30.7
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 2.0e-27 128.6 277 36.5
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 4.4e-27 127.5 445 29.4
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 4.4e-27 127.5 451 27.9
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 4.4e-27 127.5 776 26.9
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 5.8e-27 127.1 562 28.6
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 2.9e-26 124.8 364 31.6
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 3.7e-26 124.4 360 33.3
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 6.4e-26 123.6 416 31.2
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 8.3e-26 123.2 168 47.6
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 4.1e-25 120.9 503 28.8
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.5e-24 117.9 500 28.2
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 6.0e-24 117.1 332 32.2
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.3e-23 115.9 392 32.1
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 3.9e-23 114.4 397 29.0
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.2e-21 109.4 640 26.2
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 1.8e-20 105.5 165 43.0
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 7.6e-19 100.1 462 28.4
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.4e-17 94.0 261 32.2
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 6.8e-12 77.0 349 26.9
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 6.8e-12 77.0 77 50.6
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 1.9e-09 68.9 239 27.6
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 1.9e-09 68.9 221 29.0
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.4e-09 67.4 426 26.5
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 7.1e-09 67.0 209 29.7
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 3.5e-08 64.7 93 41.9
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 1.3e-07 62.8 299 27.1
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 3.0e-07 61.6 236 27.1
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 5.1e-07 60.8 227 26.4
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 5.1e-07 60.8 221 26.2
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 6.6e-07 60.5 213 27.2
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 8.7e-07 60.1 215 30.2
Mapoly0011s0209 Marchantia polymorpha HOM05D003788 ORTHO05D253274 1.1e-06 59.7 138 29.0
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 4.3e-06 57.8 304 25.7


User provided reference genes

Program Settings