Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1685.2 899 100.0
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 0.0e+00 1642.5 899 97.9
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1623.6 903 97.0
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 0.0e+00 1409.8 968 82.2
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1400.2 987 80.6
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1107.8 948 71.2
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.1e-287 993.4 1031 61.8
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.4e-277 959.9 1029 61.3
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 1.8e-277 959.5 1040 59.5
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 4.4e-276 954.9 1033 62.1
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 7.0e-266 921.0 997 60.5
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 9.2e-266 920.6 995 60.5
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 3.9e-264 915.2 1030 59.7
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.1e-261 905.6 1031 58.6
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 3.4e-260 902.1 994 60.1
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 3.4e-260 902.1 991 62.0
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 3.4e-260 902.1 991 62.0
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 5.8e-260 901.4 1005 59.6
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 2.2e-259 899.4 1005 59.5
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.1e-254 882.9 857 64.9
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 3.9e-240 835.5 1008 59.4
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 9.6e-239 830.9 996 59.6
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 1.3e-214 750.7 973 55.6
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 2.2e-203 713.4 829 59.7
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 1.3e-158 564.7 1078 45.4
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.5e-122 444.1 1069 39.9
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 2.9e-110 404.1 939 39.4
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 8.4e-110 402.5 904 40.7
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 8.4e-110 402.5 940 38.5
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 4.2e-109 400.2 941 39.4
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 7.4e-106 389.4 932 40.3
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.6e-105 388.3 913 40.0
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 2.1e-92 344.7 879 37.5
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 4.6e-92 343.6 868 37.3
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 3.0e-91 340.9 863 38.0
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 1.5e-90 338.6 863 37.9
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 7.4e-90 336.3 856 37.7
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 2.2e-89 334.7 919 35.7
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 2.8e-89 334.3 909 36.2
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 1.8e-88 331.6 911 36.3
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 5.3e-88 330.1 912 35.6
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 1.4e-85 322.0 933 34.8
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 2.7e-84 317.8 905 35.5
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 5.9e-71 273.5 909 33.0
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.1e-56 226.1 961 29.7
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 1.2e-52 212.6 740 32.6
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.2e-52 212.6 740 32.6
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 8.6e-46 189.9 1193 25.0
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 7.3e-45 186.8 806 30.6
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.5e-42 179.1 1179 25.9
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 4.4e-42 177.6 1133 25.9
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 4.4e-42 177.6 1133 25.9
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 2.2e-41 175.3 1211 25.3
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 4.9e-41 174.1 989 26.8
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.3e-38 166.0 1278 24.5
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.0e-38 164.1 1165 25.8
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 6.6e-38 163.7 1143 24.8
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 1.1e-37 162.9 1239 25.1
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.5e-37 161.8 1273 24.8
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 3.3e-37 161.4 1089 25.8
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 5.6e-37 160.6 1222 26.0
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 5.6e-37 160.6 1157 26.3
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 7.3e-37 160.2 1233 24.9
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 1.2e-36 159.5 852 27.2
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 6.2e-36 157.1 1165 25.2
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 8.0e-36 156.8 1218 25.0
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 8.0e-36 156.8 1216 25.0
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 1.0e-35 156.4 1071 26.1
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.3e-35 155.2 1165 25.8
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.2e-34 152.9 1214 24.7
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 1.2e-34 152.9 1258 25.3
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.5e-34 152.5 1213 24.9
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.5e-34 152.5 1070 25.2
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.6e-34 151.8 396 32.8
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 2.6e-34 151.8 396 32.8
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 4.4e-34 151.0 396 32.8
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 4.4e-34 151.0 1183 24.8
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 5.8e-34 150.6 629 29.9
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 5.8e-34 150.6 1251 25.0
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.8e-34 150.6 453 33.8
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.2e-33 148.7 423 32.9
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.9e-33 148.3 454 33.0
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 3.7e-33 147.9 1056 25.1
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 6.4e-33 147.1 474 31.9
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 8.3e-33 146.7 1189 25.2
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 1.1e-32 146.4 1290 24.0
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 1.1e-32 146.4 446 32.1
BcaC03g14237 Brassica carinata HOM05D003788 ORTHO05D004633 2.4e-32 145.2 137 65.0
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 2.4e-32 145.2 1192 23.4
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 3.2e-32 144.8 483 31.3
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 4.1e-32 144.4 572 29.9
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 5.4e-32 144.1 1228 24.3
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 5.4e-32 144.1 592 30.1
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 5.4e-32 144.1 1012 25.2
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 7.0e-32 143.7 1095 23.7
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 7.0e-32 143.7 1261 24.6
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 1.2e-31 142.9 635 29.3
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 4.6e-31 141.0 432 32.2
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.0e-30 139.8 1103 23.3
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 1.0e-30 139.8 1188 23.4
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.0e-30 138.3 1118 24.4
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 3.0e-30 138.3 483 32.3
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 3.0e-30 138.3 863 26.7
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 3.0e-30 138.3 1189 24.6
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 6.6e-30 137.1 453 30.9
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.5e-29 136.0 624 29.2
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.9e-29 135.6 409 32.3
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 5.6e-29 134.0 409 32.0
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 7.3e-29 133.7 733 26.5
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.2e-28 132.9 484 30.2
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 3.6e-28 131.3 1029 24.3
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 3.6e-28 131.3 394 32.5
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.3e-27 128.6 455 29.9
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 3.1e-27 128.3 500 28.8
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.2e-27 127.5 1200 24.2
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 8.9e-27 126.7 937 26.3
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 1.2e-26 126.3 910 26.2
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 1.5e-26 125.9 469 32.4
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 2.0e-26 125.6 393 32.3
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 4.4e-26 124.4 327 31.5
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 4.4e-26 124.4 954 24.2
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 5.8e-26 124.0 1225 23.5
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 9.8e-26 123.2 501 30.5
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 9.8e-26 123.2 861 25.9
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.3e-25 122.9 410 29.0
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.3e-25 122.9 350 33.4
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.3e-25 122.9 464 30.4
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 1.3e-25 122.9 410 29.8
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.7e-25 122.5 433 30.9
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.7e-25 122.5 438 32.9
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 3.7e-25 121.3 433 30.7
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.7e-25 121.3 665 27.8
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 4.9e-25 120.9 579 28.8
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 6.4e-25 120.6 411 29.9
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 5.4e-24 117.5 964 26.0
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 5.4e-24 117.5 472 28.0
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 4.6e-23 114.4 665 26.5
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 4.6e-23 114.4 382 30.1
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.3e-22 112.8 878 22.3
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.7e-22 112.5 378 32.8
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.7e-22 112.5 522 28.0
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 1.7e-22 112.5 947 24.3
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 1.7e-22 112.5 1162 23.8
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 3.0e-22 111.7 191 43.5
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 3.0e-22 111.7 924 24.8
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 6.6e-22 110.5 371 32.3
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 8.6e-22 110.2 940 24.9
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.5e-21 109.4 432 26.6
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 2.5e-21 108.6 416 29.8
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 2.5e-21 108.6 1017 24.0
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 7.3e-21 107.1 612 27.0
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.2e-20 106.3 398 31.2
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 2.8e-20 105.1 967 24.7
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 1.1e-19 103.2 527 27.1
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.1e-19 103.2 661 27.1
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.4e-19 102.8 383 31.6
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 5.2e-19 100.9 495 27.5
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 8.9e-19 100.1 196 38.3
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 8.9e-19 100.1 596 25.3
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 5.4e-16 90.9 922 23.9
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 7.8e-15 87.0 337 29.4
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 1.1e-13 83.2 924 24.2
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.3e-13 80.5 212 30.7
BcaC03g16336 Brassica carinata HOM05D021359 ORTHO05D016065 7.6e-10 70.5 123 43.9
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 9.3e-08 63.5 161 34.8
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 2.7e-07 62.0 63 54.0
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 3.5e-07 61.6 226 28.8
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 4.6e-07 61.2 244 26.2
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 4.6e-07 61.2 219 26.9
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.7e-06 59.3 445 26.3
Mapoly0011s0209 Marchantia polymorpha HOM05D003788 ORTHO05D253274 3.9e-06 58.2 123 31.7


User provided reference genes

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