Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 2.2e-168 595.5 297 100.0
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 1.2e-166 589.7 293 100.0
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 3.6e-150 535.0 294 92.5
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 1.1e-146 523.5 295 91.2
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 3.1e-146 521.9 295 90.8
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 2.1e-110 402.9 296 73.0
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 3.6e-110 402.1 280 76.1
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 1.8e-109 399.8 296 74.0
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 3.2e-106 389.0 294 72.4
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 1.7e-104 383.3 296 69.9
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 2.6e-92 342.8 280 69.3
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 2.4e-77 293.1 255 62.7
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 4.8e-62 242.3 286 51.4
C02p15810 Brassica napus HOM05D004836 ORTHO05D017167 7.9e-57 224.9 213 63.4
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 1.4e-56 224.2 295 49.5
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 7.5e-39 165.2 152 61.8
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 5.7e-23 112.5 283 35.0
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 7.0e-21 105.5 92 56.5
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 2.9e-19 100.1 283 33.6
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.1e-18 98.2 105 47.6
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.5e-18 97.8 91 52.7
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.5e-18 97.8 102 51.0
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.5e-18 97.8 100 53.0
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 1.9e-18 97.4 90 51.1
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.5e-18 97.1 82 59.8
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 3.3e-18 96.7 88 52.3
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 4.3e-18 96.3 74 60.8
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 5.6e-18 95.9 94 54.3
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.6e-17 94.4 93 52.7
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 1.6e-17 94.4 88 53.4
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.1e-17 94.0 92 51.1
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 6.1e-17 92.4 79 55.7
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.0e-16 91.7 73 58.9
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 2.3e-16 90.5 120 44.2
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 3.1e-16 90.1 76 56.6
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 3.1e-16 90.1 74 59.5
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 4.0e-16 89.7 88 53.4
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 4.0e-16 89.7 80 51.2
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 6.8e-16 89.0 74 54.1
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 8.9e-16 88.6 98 49.0
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 8.9e-16 88.6 98 49.0
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 1.2e-15 88.2 102 52.0
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.2e-15 88.2 283 31.4
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 1.5e-15 87.8 89 53.9
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.0e-15 87.4 98 48.0
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 2.0e-15 87.4 72 56.9
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 3.4e-15 86.7 205 34.1
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 4.4e-15 86.3 107 41.1
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 7.5e-15 85.5 279 30.5
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 9.8e-15 85.1 327 30.0
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 1.3e-14 84.7 279 30.8
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 1.7e-14 84.3 56 67.9
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.2e-14 84.0 89 51.7
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 2.9e-14 83.6 279 29.7
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.9e-14 83.6 280 31.4
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 8.3e-14 82.0 291 31.6
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 8.3e-14 82.0 90 50.0
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.1e-13 81.6 64 60.9
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.1e-13 81.6 88 46.6
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 1.4e-13 81.3 74 50.0
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 2.4e-13 80.5 80 55.0
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 3.2e-13 80.1 300 32.7
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.2e-13 80.1 69 55.1
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 4.1e-13 79.7 285 30.5
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 7.0e-13 79.0 279 28.3
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 9.2e-13 78.6 78 50.0
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 1.6e-12 77.8 98 46.9
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 2.7e-12 77.0 89 44.9
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 6.0e-12 75.9 263 32.7
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 7.8e-12 75.5 74 54.1
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 7.8e-12 75.5 257 30.7
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 7.8e-12 75.5 337 28.2
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 1.7e-11 74.3 74 52.7
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 1.7e-11 74.3 75 49.3
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.7e-11 74.3 76 50.0
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.3e-11 73.9 78 46.2
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.3e-11 73.9 78 44.9
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 8.6e-11 72.0 77 48.1
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 1.5e-10 71.2 64 46.9
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 3.3e-10 70.1 257 29.2
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 4.3e-10 69.7 64 48.4
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 7.3e-10 68.9 93 39.8
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 7.3e-10 68.9 64 48.4
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 1.2e-09 68.2 257 28.8
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.6e-09 67.8 110 38.2
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 1.6e-09 67.8 58 51.7
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.6e-09 67.8 150 34.0
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 1.6e-09 67.8 54 59.3
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 2.1e-09 67.4 90 38.9
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 2.1e-09 67.4 257 28.8
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 2.8e-09 67.0 78 41.0
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 2.8e-09 67.0 312 28.5
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 4.7e-09 66.2 78 39.7
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 6.2e-09 65.9 119 36.1
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 6.2e-09 65.9 76 43.4
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 2.3e-08 63.9 70 41.4
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 3.1e-08 63.5 265 27.5
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 4.0e-08 63.2 219 29.2
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.2e-07 61.6 338 27.2
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 1.5e-07 61.2 78 39.7
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 2.6e-07 60.5 74 44.6
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 9.8e-07 58.5 259 29.0
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 1.3e-06 58.2 257 28.4
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 1.3e-06 58.2 257 28.4
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 4.9e-06 56.2 283 24.4
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 6.4e-06 55.8 296 25.3


User provided reference genes

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