Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 2.5e-201 705.7 493 100.0
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 3.1e-199 698.7 494 99.6
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 5.7e-193 677.9 495 97.8
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 6.5e-181 637.9 499 94.6
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 1.2e-179 633.6 499 94.2
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 4.5e-174 615.1 503 92.0
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 3.2e-172 609.0 510 90.8
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 8.0e-163 577.8 511 78.5
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 2.0e-161 573.2 503 87.3
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 5.7e-161 571.6 511 85.5
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 1.4e-154 550.4 506 86.6
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 1.8e-146 523.5 507 83.0
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 9.0e-114 414.8 513 71.5
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 5.1e-109 399.1 338 97.3
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 4.3e-108 396.0 481 69.9
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 1.6e-107 394.0 481 70.1
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.6e-107 394.0 481 70.1
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.1e-106 391.3 481 69.9
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.4e-106 390.2 480 69.6
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 2.4e-106 390.2 467 69.4
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 3.4e-105 386.3 472 72.2
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.4e-103 380.9 473 72.3
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 5.5e-103 379.0 469 69.9
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 1.2e-102 377.9 471 70.5
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 3.9e-101 372.9 484 65.9
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 6.5e-96 355.5 480 69.8
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 1.4e-95 354.4 503 63.6
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 3.0e-93 346.7 516 64.3
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 4.3e-92 342.8 484 66.1
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 1.8e-90 337.4 487 67.6
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 2.4e-90 337.0 464 69.0
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 3.1e-90 336.7 471 67.3
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 4.1e-90 336.3 467 64.0
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 9.0e-90 335.1 460 68.3
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 7.7e-89 332.0 512 62.1
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 2.2e-88 330.5 467 64.5
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 2.9e-88 330.1 485 66.4
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 5.0e-88 329.3 512 61.3
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 5.0e-88 329.3 512 62.1
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 4.2e-87 326.2 452 63.7
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 7.2e-87 325.5 466 66.3
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 3.6e-86 323.2 482 62.4
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 4.6e-86 322.8 522 61.9
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.8e-85 320.9 322 69.3
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 6.7e-85 318.9 484 66.3
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 1.5e-84 317.8 468 66.5
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 1.5e-84 317.8 499 60.3
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 2.5e-84 317.0 489 64.0
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 2.5e-84 317.0 464 64.2
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 2.5e-84 317.0 468 62.8
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 5.7e-84 315.8 464 64.4
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 7.4e-84 315.5 486 59.5
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 9.7e-84 315.1 541 57.9
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 1.3e-83 314.7 485 64.3
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 1.3e-83 314.7 466 61.4
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 8.2e-83 312.0 499 60.9
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.8e-82 310.8 362 76.5
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 2.4e-82 310.5 491 62.7
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 2.6e-81 307.0 499 58.1
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 1.3e-80 304.7 400 67.0
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 1.3e-80 304.7 482 64.3
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 5.0e-80 302.8 444 66.2
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 8.5e-80 302.0 476 62.6
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 1.9e-79 300.8 474 63.9
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 3.2e-79 300.1 395 72.4
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 4.7e-78 296.2 442 65.8
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 1.4e-77 294.7 491 61.5
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 3.0e-77 293.5 494 60.9
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 6.7e-77 292.4 402 70.1
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 6.7e-77 292.4 492 58.9
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 2.0e-76 290.8 456 64.3
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 4.4e-76 289.7 456 62.5
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 7.4e-76 288.9 478 61.5
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 1.3e-75 288.1 464 60.6
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 1.3e-75 288.1 492 60.4
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 3.7e-75 286.6 469 62.9
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 1.1e-74 285.0 465 61.9
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 9.1e-74 282.0 469 60.3
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 9.1e-74 282.0 489 60.7
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 2.9e-72 276.9 502 53.6
BcaNung06726 Brassica carinata HOM05D006454 ORTHO05D008024 1.9e-71 274.2 160 91.2
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 1.9e-71 274.2 507 55.4
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 3.2e-71 273.5 451 59.6
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 9.4e-71 271.9 479 58.2
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.6e-70 271.2 492 58.9
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 6.1e-70 269.2 493 56.0
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 2.0e-68 264.2 393 67.4
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 9.7e-68 261.9 520 54.8
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 1.7e-67 261.2 395 61.8
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 2.2e-67 260.8 472 58.9
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 3.5e-65 253.4 292 82.5
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 7.7e-65 252.3 450 60.2
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 8.8e-61 238.8 402 59.0
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 7.5e-60 235.7 492 54.1
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 5.3e-58 229.6 494 56.9
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 7.7e-57 225.7 495 56.0
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 2.9e-56 223.8 150 83.3
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 3.2e-55 220.3 292 80.5
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.2e-54 218.4 399 61.7
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 1.2e-54 218.4 373 58.4
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 1.6e-54 218.0 237 54.4
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 8.9e-45 185.7 405 55.1
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 7.5e-44 182.6 292 71.2
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 3.7e-43 180.3 300 54.3
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 1.8e-42 177.9 231 80.5
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 4.5e-41 173.3 285 74.4
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 1.2e-38 165.2 486 50.4
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 4.7e-38 163.3 458 29.7
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 1.5e-36 158.3 119 82.4
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 7.5e-36 156.0 398 54.0
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 6.2e-30 136.3 221 40.3
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 2.9e-27 127.5 109 74.3
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 1.5e-23 115.2 54 100.0
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 4.1e-18 97.1 321 53.3
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 1.0e-16 92.4 369 47.2
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.7e-16 91.7 314 28.3
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 2.3e-16 91.3 333 48.3
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 7.3e-15 86.3 313 49.8
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 1.1e-07 62.4 83 32.5
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 4.3e-07 60.5 120 44.2
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 2.8e-06 57.8 118 28.8


User provided reference genes

Program Settings