Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.3e-304 1048.9 513 100.0
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-297 1025.8 529 96.4
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-286 989.2 530 93.0
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 2.3e-285 984.9 533 92.3
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.5e-284 982.2 530 93.2
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.2e-254 882.9 536 83.6
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 8.7e-253 876.7 540 82.4
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 8.7e-253 876.7 534 82.8
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.7e-248 862.4 539 81.6
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.6e-246 855.9 545 80.4
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 2.8e-243 845.1 546 78.6
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 9.0e-234 813.5 528 78.4
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 9.7e-204 713.8 523 68.6
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 3.3e-183 645.6 533 61.2
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 8.3e-179 630.9 527 60.7
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.4e-178 629.4 523 60.8
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-178 629.0 523 60.8
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-178 629.0 523 60.8
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 3.2e-178 629.0 525 61.3
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 4.1e-178 628.6 529 61.1
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.1e-178 628.6 522 60.2
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 9.2e-178 627.5 438 74.9
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 9.2e-178 627.5 529 58.8
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.2e-177 627.1 522 60.0
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 2.3e-176 622.9 530 60.6
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.3e-176 622.9 523 60.0
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 8.6e-176 620.9 522 59.8
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 8.6e-176 620.9 559 58.5
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.1e-175 620.5 535 59.1
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-175 619.8 523 60.4
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.9e-175 619.8 523 60.4
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.9e-175 619.8 559 58.3
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.3e-175 619.0 531 60.8
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 3.3e-175 619.0 527 61.5
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 7.3e-175 617.8 525 60.6
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.2e-174 617.1 535 59.4
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.2e-174 617.1 543 59.9
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.6e-174 616.7 533 61.2
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.6e-174 616.7 529 60.5
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 2.1e-174 616.3 532 59.8
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 2.1e-174 616.3 534 59.7
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 2.8e-174 615.9 539 59.4
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 3.6e-174 615.5 542 57.2
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 4.7e-174 615.1 539 57.9
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.2e-174 614.8 523 59.7
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.0e-173 614.0 543 57.5
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.8e-173 613.2 531 59.7
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 2.3e-173 612.8 542 59.2
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.3e-173 612.8 529 57.5
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 6.8e-173 611.3 538 57.4
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 8.9e-173 610.9 540 56.9
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.2e-172 610.5 523 59.3
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 2.6e-172 609.4 538 58.4
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 4.4e-172 608.6 533 58.7
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 1.3e-171 607.1 529 58.8
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.3e-171 607.1 525 58.9
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.3e-171 607.1 528 58.9
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 4.9e-171 605.1 536 58.8
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.9e-170 603.2 524 59.2
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 4.1e-170 602.1 536 57.6
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 3.5e-169 599.0 536 56.5
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 7.8e-169 597.8 524 60.3
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 7.8e-169 597.8 548 56.8
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 7.8e-169 597.8 548 56.8
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.7e-168 596.7 522 58.4
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 2.3e-168 596.3 527 57.7
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 2.3e-168 596.3 521 59.1
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 3.3e-167 592.4 544 55.3
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 5.6e-167 591.7 529 58.6
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.2e-166 590.5 539 57.3
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.6e-166 590.1 526 59.5
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 2.1e-166 589.7 527 56.4
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.8e-166 589.3 523 59.3
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 1.1e-165 587.4 536 56.7
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.4e-165 587.0 531 57.3
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.2e-165 585.1 522 58.8
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.9e-165 584.3 522 58.8
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.2e-164 583.9 530 58.3
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.5e-164 583.6 521 57.2
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 2.0e-164 583.2 523 58.9
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.4e-164 582.4 530 58.1
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 3.7e-163 578.9 523 57.7
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.9e-162 576.6 522 57.5
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 2.4e-162 576.2 510 57.8
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 2.4e-162 576.2 554 56.3
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 3.2e-162 575.9 530 57.4
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.6e-161 573.5 518 57.7
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 2.1e-161 573.2 531 55.9
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 3.5e-161 572.4 539 55.3
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.7e-160 570.1 524 56.3
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.1e-160 568.5 523 56.6
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 6.6e-160 568.2 522 56.5
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.6e-159 565.1 546 54.8
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 3.4e-156 555.8 518 55.8
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.7e-155 553.5 540 55.4
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 3.7e-155 552.4 541 55.6
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.4e-154 549.7 487 57.7
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.2e-154 549.3 541 54.9
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 9.2e-154 547.7 499 54.7
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.7e-153 546.2 527 52.8
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.4e-149 533.9 465 59.1
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 4.0e-149 532.3 478 56.5
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.2e-148 530.8 518 54.1
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.0e-148 530.0 521 53.4
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 2.2e-147 526.6 529 52.9
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.4e-146 523.9 511 53.2
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.6e-145 520.4 485 57.5
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.3e-142 510.8 437 57.7
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 4.8e-142 508.8 423 60.8
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 6.4e-139 498.4 457 58.4
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 2.4e-138 496.5 402 63.9
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 2.0e-132 476.9 498 51.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.6e-132 476.5 393 61.3
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 3.4e-124 449.5 546 53.8
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 4.8e-118 429.1 315 67.6
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 4.1e-117 426.0 302 70.2
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 6.9e-117 425.2 322 65.5
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.1e-113 413.7 314 63.1
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 2.5e-111 406.8 313 64.2
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 4.8e-110 402.5 528 41.3
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.4e-109 401.0 517 42.9
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.7e-107 394.0 579 38.9
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.8e-104 384.0 339 63.7
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 8.8e-104 381.7 265 76.6
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 4.3e-103 379.4 393 52.4
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 4.1e-101 372.9 291 61.9
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.0e-83 315.1 245 65.3
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.1e-82 311.6 322 51.6
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 5.5e-82 309.3 265 61.9
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.6e-81 307.8 262 65.6
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.4e-80 304.7 262 65.3
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 4.0e-80 303.1 248 62.1
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 2.7e-73 280.4 281 52.0
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.0e-67 261.9 204 63.7
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 2.2e-62 244.2 206 60.7
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 7.3e-58 229.2 118 90.7
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 9.5e-58 228.8 123 85.4
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 9.5e-58 228.8 123 85.4
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-56 224.2 165 74.5
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.2e-52 211.8 165 67.3
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 1.6e-49 201.4 234 48.3
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-49 201.1 441 31.1
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.1e-45 188.7 100 87.0
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 7.6e-39 166.0 180 47.8
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 4.6e-36 156.8 101 74.3
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 7.8e-36 156.0 294 35.0
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.3e-35 155.2 185 47.6
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 3.0e-35 154.1 180 46.7
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 6.6e-35 152.9 76 89.5
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 6.6e-35 152.9 76 89.5
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 1.6e-33 148.3 270 35.6
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 6.9e-32 142.9 79 86.1
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 5.8e-31 139.8 109 65.1
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.7e-30 138.3 171 45.6
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 1.4e-29 135.2 271 35.4
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 7.1e-29 132.9 175 45.7
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 5.6e-26 123.2 72 86.1
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 9.6e-26 122.5 98 60.2
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 5.3e-24 116.7 164 43.3
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.3e-22 112.1 94 59.6
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-21 107.1 76 71.1
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 4.2e-13 80.5 96 41.7
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 1.1e-10 72.4 51 66.7
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 1.1e-10 72.4 51 66.7
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.4e-07 60.8 34 88.2


User provided reference genes

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