Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06369 Brassica carinata HOM05D007721 ORTHO05D009811 1.5e-43 179.1 87 100.0
BolC3t14068H Brassica oleracea HOM05D001160 ORTHO05D001092 4.3e-43 177.6 87 97.7
C03p16480 Brassica napus HOM05D007721 ORTHO05D009811 2.8e-42 174.9 87 97.7
A03p14040 Brassica napus HOM05D007721 ORTHO05D009811 4.0e-41 171.0 87 94.3
BcaC03g15544 Brassica carinata HOM05D007721 ORTHO05D009811 5.2e-41 170.6 87 94.3
C02p32350 Brassica napus HOM05D007721 ORTHO05D009811 5.2e-41 170.6 87 94.3
BcaB05g24889 Brassica carinata HOM05D007721 ORTHO05D009811 6.8e-41 170.2 87 92.0
BraA03t10703Z Brassica rapa HOM05D007721 ORTHO05D009811 2.0e-40 168.7 87 93.1
A02p19730 Brassica napus HOM05D007721 ORTHO05D009811 1.3e-39 166.0 87 93.1
BraA02t07009Z Brassica rapa HOM05D007721 ORTHO05D009811 2.2e-39 165.2 87 92.0
Thhalv10015165m.g Eutrema salsugineum HOM05D007721 ORTHO05D009811 9.5e-27 123.2 80 75.0
Ciclev10017339m.g Citrus clementina HOM05D007721 ORTHO05D009811 5.4e-22 107.5 74 70.3
Carub.0006s1099 Capsella rubella HOM05D007721 ORTHO05D009811 2.1e-21 105.5 74 66.2
CARHR200650 Cardamine hirsuta HOM05D007721 ORTHO05D009811 2.7e-21 105.1 74 68.9
A10p25380 Brassica napus HOM05D007721 ORTHO05D009811 1.0e-20 103.2 73 65.8
Sp6g31180 Schrenkiella parvula HOM05D007721 ORTHO05D009811 1.0e-20 103.2 67 73.1
Manes.06G162100 Manihot esculenta HOM05D007721 ORTHO05D009811 1.3e-20 102.8 73 64.4
Potri.009G050900 Populus trichocarpa HOM05D007721 ORTHO05D009811 5.1e-20 100.9 87 57.5
QL01p004762 Quercus lobata HOM05D007721 ORTHO05D009811 5.1e-20 100.9 72 66.7
Migut.D01985 Erythranthe guttata HOM05D007721 ORTHO05D009811 1.1e-19 99.8 79 58.2
QL01p004062 Quercus lobata HOM05D007721 ORTHO05D009811 1.1e-19 99.8 72 66.7
CiPaw.14G116700 Carya illinoinensis HOM05D007721 ORTHO05D009811 1.9e-19 99.0 76 61.8
Prupe.1G174200 Prunus persica HOM05D007721 ORTHO05D009811 1.9e-19 99.0 75 62.7
MD04G1023900 Malus domestica HOM05D007721 ORTHO05D009811 4.3e-19 97.8 76 59.2
RcHm_v2.0_Chr4g0411561 Rosa chinensis HOM05D007721 ORTHO05D009811 5.6e-19 97.4 74 62.2
Nn7g36378 Nelumbo nucifera HOM05D007721 ORTHO05D009811 7.3e-19 97.1 80 57.5
unitig_746.g26884 Utricularia gibba HOM05D007721 ORTHO05D009811 2.1e-18 95.5 75 62.7
Hma1.2p1_0591F.1_g185200 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 3.6e-18 94.7 73 58.9
FAN12G3598 Fragaria x ananassa HOM05D007721 ORTHO05D009811 4.7e-18 94.4 72 61.1
Hma1.2p1_0055F.1_g031440 Hydrangea macrophylla HOM05D007721 ORTHO05D009811 4.7e-18 94.4 80 55.0
SalBow6G6561 Salvia bowleyana HOM05D007721 ORTHO05D009811 4.7e-18 94.4 87 49.4
GSVIVG01031536001 Vitis vinifera HOM05D007721 ORTHO05D009811 4.7e-18 94.4 75 58.7
Lj3g0008015 Lotus japonicus HOM05D007721 ORTHO05D009811 6.2e-18 94.0 74 62.2
SalBow6G6016 Salvia bowleyana HOM05D007721 ORTHO05D009811 1.1e-17 93.2 87 49.4
Carub.0008s1583 Capsella rubella HOM05D007721 ORTHO05D009811 2.4e-17 92.0 81 63.0
Potri.012G127000 Populus trichocarpa HOM05D007721 ORTHO05D009811 2.4e-17 92.0 74 59.5
Phvul.010G051900 Phaseolus vulgaris HOM05D007721 ORTHO05D009811 4.0e-17 91.3 73 60.3
Glyma.03G114000 Glycine max HOM05D007721 ORTHO05D009811 5.2e-17 90.9 73 61.6
Oeu013174.2 Olea europaea HOM05D007721 ORTHO05D009811 5.2e-17 90.9 80 53.8
Thecc.09G239100 Theobroma cacao HOM05D007721 ORTHO05D009811 5.2e-17 90.9 80 60.0
Dinv09950 Davidia involucrata HOM05D007721 ORTHO05D009811 6.8e-17 90.5 87 48.3
FAN07G1724 Fragaria x ananassa HOM05D007721 ORTHO05D009811 6.8e-17 90.5 72 59.7
FAN17G1673 Fragaria x ananassa HOM05D007721 ORTHO05D009811 1.2e-16 89.7 65 63.1
CSS0018729 Camellia sinensis var. sinensis HOM05D007721 ORTHO05D009811 1.5e-16 89.4 74 58.1
Cc01_g05050 Coffea canephora HOM05D007721 ORTHO05D009811 2.0e-16 89.0 75 57.3
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 2.0e-16 89.0 73 56.2
Peaxi162Scf00069g00105 Petunia axillaris HOM05D007721 ORTHO05D009811 2.6e-16 88.6 72 56.9
Sc08g0006390 Simmondsia chinensis HOM05D007721 ORTHO05D009811 2.6e-16 88.6 88 52.3
Actinidia06926 Actinidia chinensis HOM05D007721 ORTHO05D009811 3.4e-16 88.2 80 56.2
Gohir.A05G070100 Gossypium hirsutum HOM05D007721 ORTHO05D009811 3.4e-16 88.2 83 54.2
Medtr7g102340 Medicago truncatula HOM05D007721 ORTHO05D009811 3.4e-16 88.2 73 58.9
Solyc10g079920.2 Solanum lycopersicum HOM05D007721 ORTHO05D009811 3.4e-16 88.2 72 56.9
Sopen10g030540 Solanum pennellii HOM05D007721 ORTHO05D009811 3.4e-16 88.2 72 56.9
Nitab4.5_0000677g0250 Nicotiana tabacum HOM05D007721 ORTHO05D009811 5.8e-16 87.4 71 56.3
ECA236G4835 Erigeron canadensis HOM05D007721 ORTHO05D009811 7.6e-16 87.0 75 56.0
Lsat_1_v5_gn_8_56740 Lactuca sativa HOM05D007721 ORTHO05D009811 9.9e-16 86.7 87 49.4
Gorai.001G137300 Gossypium raimondii HOM05D007721 ORTHO05D009811 1.3e-15 86.3 73 58.9
Ah.06g193880 Amaranthus hybridus HOM05D007721 ORTHO05D009811 1.7e-15 85.9 79 53.2
Eucgr.J00742 Eucalyptus grandis HOM05D007721 ORTHO05D009811 2.2e-15 85.5 83 51.8
Lalb_Chr07g0195541 Lupinus albus HOM05D007721 ORTHO05D009811 2.2e-15 85.5 73 56.2
FAN22G0179 Fragaria x ananassa HOM05D007721 ORTHO05D009811 3.8e-15 84.7 85 49.4
SEGI_33053 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 8.4e-15 83.6 92 48.9
AL6G23280 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 1.4e-14 82.8 53 71.7
AL6G23350 Arabidopsis lyrata HOM05D007721 ORTHO05D009811 1.4e-14 82.8 53 71.7
SEGI_08983 Sequoiadendron giganteum HOM05D007721 ORTHO05D009811 1.4e-14 82.8 78 51.3
Nitab4.5_0000937g0060 Nicotiana tabacum HOM05D007721 ORTHO05D009811 3.2e-14 81.6 72 51.4
arahy.Tifrunner.gnm1.ann1.MV9AMF Arachis hypogaea HOM05D007721 ORTHO05D009811 7.1e-14 80.5 73 53.4
arahy.Tifrunner.gnm1.ann1.S4R3T1 Arachis hypogaea HOM05D007721 ORTHO05D009811 7.1e-14 80.5 73 53.4
Gohir.A07G123300 Gossypium hirsutum HOM05D007721 ORTHO05D009811 7.1e-14 80.5 73 56.2
Sed0010702 Sechium edule HOM05D007721 ORTHO05D009811 1.2e-13 79.7 72 54.2
MELO3C014581.2 Cucumis melo HOM05D007721 ORTHO05D009811 3.5e-13 78.2 72 52.8
Os01g0939000 Oryza sativa ssp. japonica HOM05D007721 ORTHO05D009811 7.8e-13 77.0 72 50.0
Nitab4.5_0000562g0070 Nicotiana tabacum HOM05D007721 ORTHO05D009811 1.1e-11 73.2 67 50.7
TAR623G1786 Trochodendron aralioides HOM05D007721 ORTHO05D009811 5.6e-11 70.9 60 51.7
Zm00001eb141680 Zea mays HOM05D007721 ORTHO05D009811 1.6e-10 69.3 72 48.6
vmacro04125 Vaccinium macrocarpon HOM05D007721 ORTHO05D009811 6.2e-10 67.4 59 54.2
AagrBONN_evm.TU.Sc2ySwM_362.695 Anthoceros agrestis HOM05D007721 ORTHO05D009811 1.4e-09 66.2 75 45.3
Aa31LG3G11430 Aethionema arabicum HOM05D007721 ORTHO05D009811 3.1e-09 65.1 57 59.6
Mapoly0048s0062 Marchantia polymorpha HOM05D007721 ORTHO05D009811 1.2e-08 63.2 72 41.7
SGA_v2.0_scaffold7G04151 Striga asiatica HOM05D000252 ORTHO05D000307 9.3e-06 53.5 59 40.7


User provided reference genes

Program Settings