Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06365 Brassica carinata HOM05D008197 ORTHO05D001295 7.5e-52 206.8 100 100.0
BolC3t14069H Brassica oleracea HOM05D008197 ORTHO05D001295 1.4e-50 202.6 100 98.0
A03p14060 Brassica napus HOM05D008197 ORTHO05D001295 3.2e-50 201.4 100 97.0
BraA03t10706Z Brassica rapa HOM05D008197 ORTHO05D001295 3.2e-50 201.4 100 97.0
BcaB08g37463 Brassica carinata HOM05D008197 ORTHO05D001295 7.0e-50 200.3 100 96.0
BcaC07g41669 Brassica carinata HOM05D008197 ORTHO05D001295 7.0e-50 200.3 100 96.0
C08p46840 Brassica napus HOM05D008197 ORTHO05D001295 3.5e-49 198.0 100 95.0
C03p16500 Brassica napus HOM05D008197 ORTHO05D001295 7.8e-49 196.8 100 96.0
BcaB01g04341 Brassica carinata HOM05D008197 ORTHO05D001295 1.0e-40 169.9 99 84.8
Sp6g17340 Schrenkiella parvula HOM05D008197 ORTHO05D001295 6.8e-37 157.1 97 73.2
A02p09670 Brassica napus HOM05D008197 ORTHO05D001295 2.9e-35 151.8 101 69.3
C02p16140 Brassica napus HOM05D008197 ORTHO05D001295 3.8e-35 151.4 101 69.3
BolC2t07719H Brassica oleracea HOM05D008197 ORTHO05D001295 3.8e-35 151.4 101 69.3
A02p09660 Brassica napus HOM05D008197 ORTHO05D001295 1.4e-34 149.4 101 68.3
BraA02t06030Z Brassica rapa HOM05D008197 ORTHO05D001295 1.4e-34 149.4 101 68.3
C02p16090 Brassica napus HOM05D008197 ORTHO05D001295 4.2e-34 147.9 101 67.3
BolC2t07718H Brassica oleracea HOM05D008197 ORTHO05D001295 4.2e-34 147.9 101 67.3
BraA02t06031Z Brassica rapa HOM05D008197 ORTHO05D001295 4.2e-34 147.9 99 69.7
BcaB08g35900 Brassica carinata HOM05D008197 ORTHO05D001295 4.6e-33 144.4 103 69.9
BcaB05g22208 Brassica carinata HOM05D008197 ORTHO05D001295 2.3e-32 142.1 101 65.3
BcaC04g20232 Brassica carinata HOM05D008197 ORTHO05D001295 5.1e-32 141.0 102 66.7
BcaC04g20245 Brassica carinata HOM05D008197 ORTHO05D001295 5.1e-32 141.0 103 66.0
C09p46080 Brassica napus HOM05D008197 ORTHO05D001295 5.1e-32 141.0 102 66.7
BolC9t57463H Brassica oleracea HOM05D008197 ORTHO05D001295 5.1e-32 141.0 103 66.0
BolC9t57477H Brassica oleracea HOM05D008197 ORTHO05D001295 5.1e-32 141.0 102 66.7
A10p12660 Brassica napus HOM05D008197 ORTHO05D001295 6.6e-32 140.6 103 67.0
BraA10t43356Z Brassica rapa HOM05D008197 ORTHO05D001295 6.6e-32 140.6 103 67.0
C09p45960 Brassica napus HOM05D008197 ORTHO05D001295 1.5e-31 139.4 103 65.0
A10p12710 Brassica napus HOM05D008197 ORTHO05D001295 1.3e-30 136.3 103 64.1
BraA10t43352Z Brassica rapa HOM05D008197 ORTHO05D001295 1.3e-30 136.3 103 64.1
BcaC04g20244 Brassica carinata HOM05D008197 ORTHO05D001295 1.6e-30 136.0 103 63.1
C09p45970 Brassica napus HOM05D008197 ORTHO05D001295 1.6e-30 136.0 103 63.1
BolC9t57464H Brassica oleracea HOM05D008197 ORTHO05D001295 1.6e-30 136.0 103 63.1
AL8G30990 Arabidopsis lyrata HOM05D008197 ORTHO05D001295 8.1e-30 133.7 103 59.2
AL8G30970 Arabidopsis lyrata HOM05D008197 ORTHO05D001295 1.4e-29 132.9 104 63.5
AT5G55450 Arabidopsis thaliana HOM05D008197 ORTHO05D001295 1.8e-29 132.5 103 61.2
Carub.0008s1579 Capsella rubella HOM05D008197 ORTHO05D001295 4.4e-28 127.9 103 60.2
Carub.0008s1578 Capsella rubella HOM05D008197 ORTHO05D001295 4.9e-27 124.4 98 62.2
CARHR268760 Cardamine hirsuta HOM05D008197 ORTHO05D001295 1.9e-26 122.5 100 61.0
Thhalv10015086m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 3.2e-26 121.7 103 55.3
Thhalv10026641m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 9.3e-26 120.2 103 59.2
Thhalv10015912m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 4.3e-23 111.3 105 56.2
CARHR268770 Cardamine hirsuta HOM05D008197 ORTHO05D001295 5.6e-23 110.9 103 54.4
Carub.0008s1575 Capsella rubella HOM05D008197 ORTHO05D001295 7.3e-23 110.5 98 58.2
Sp6g17330 Schrenkiella parvula HOM05D008197 ORTHO05D001295 9.6e-23 110.2 105 54.3
AL8G30960 Arabidopsis lyrata HOM05D008197 ORTHO05D001295 2.8e-22 108.6 98 56.1
CARHR268750 Cardamine hirsuta HOM05D008197 ORTHO05D001295 6.2e-22 107.5 95 54.7
BcaB01g04342 Brassica carinata HOM05D008197 ORTHO05D001295 2.4e-21 105.5 98 54.1
A02p09680 Brassica napus HOM05D008197 ORTHO05D001295 3.1e-21 105.1 105 53.3
C03p16510 Brassica napus HOM05D008197 ORTHO05D001295 6.9e-21 104.0 98 53.1
BolC3t14070H Brassica oleracea HOM05D008197 ORTHO05D001295 6.9e-21 104.0 98 53.1
A03p14070 Brassica napus HOM05D008197 ORTHO05D001295 2.6e-20 102.1 98 52.0
C02p16150 Brassica napus HOM05D008197 ORTHO05D001295 2.6e-20 102.1 103 53.4
BolC2t07720H Brassica oleracea HOM05D008197 ORTHO05D001295 2.6e-20 102.1 103 53.4
BraA03t10707Z Brassica rapa HOM05D008197 ORTHO05D001295 2.6e-20 102.1 98 52.0
BraA02t06032Z Brassica rapa HOM05D008197 ORTHO05D001295 4.5e-20 101.3 105 53.3
Aa31LG3G11410 Aethionema arabicum HOM05D008197 ORTHO05D001295 5.8e-20 100.9 95 51.6
THA.LOC104817694 Tarenaya hassleriana HOM05D008197 ORTHO05D001295 1.7e-19 99.4 93 53.8
AT5G55410 Arabidopsis thaliana HOM05D008197 ORTHO05D001295 4.9e-19 97.8 98 53.1
Thhalv10015898m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 6.0e-17 90.9 105 43.8
BcaC07g41668 Brassica carinata HOM05D008197 ORTHO05D001295 1.8e-16 89.4 75 54.7
BraA10t43357Z Brassica rapa HOM05D008197 ORTHO05D001295 3.9e-16 88.2 103 42.7
Nn1g07396 Nelumbo nucifera HOM05D001848 ORTHO05D001295 4.8e-14 81.3 97 40.2
Carub.0008s1580 Capsella rubella HOM05D008197 ORTHO05D001295 8.1e-14 80.5 84 42.9
AT5G55460 Arabidopsis thaliana HOM05D008197 ORTHO05D001295 1.2e-12 76.6 104 37.5
Lalb_Chr00c48g0412851 Lupinus albus HOM05D001848 ORTHO05D001295 2.9e-11 72.0 89 41.6
Lalb_Chr00c48g0413061 Lupinus albus HOM05D001848 ORTHO05D001295 2.9e-11 72.0 89 41.6
Lalb_Chr04g0248081 Lupinus albus HOM05D001848 ORTHO05D001295 2.9e-11 72.0 89 41.6
Glyma.07G141500 Glycine max HOM05D001848 ORTHO05D001295 6.5e-11 70.9 88 39.8
arahy.Tifrunner.gnm1.ann1.04HYJ8 Arachis hypogaea HOM05D001848 ORTHO05D001295 1.4e-10 69.7 90 37.8
CiPaw.11G196700 Carya illinoinensis HOM05D001848 ORTHO05D001295 1.4e-10 69.7 96 39.6
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 1.4e-10 69.7 92 39.1
Cpa.g.sc12.222 Carica papaya HOM05D001848 ORTHO05D001295 1.9e-10 69.3 89 40.4
Sopen07g033320 Solanum pennellii HOM05D001848 ORTHO05D001295 1.9e-10 69.3 91 39.6
TAR627G0109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 2.5e-10 68.9 94 36.2
TAR627G0750 Trochodendron aralioides HOM05D001848 ORTHO05D001295 2.5e-10 68.9 94 36.2
Prupe.4G228100 Prunus persica HOM05D001848 ORTHO05D001295 3.2e-10 68.6 85 41.2
Glyma.18G191800 Glycine max HOM05D001848 ORTHO05D001295 4.2e-10 68.2 96 36.5
Solyc07g065110.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 4.2e-10 68.2 101 37.6
MSTRG.22559 Avicennia marina HOM05D001848 ORTHO05D001295 5.5e-10 67.8 93 34.4
AT5G48485 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 7.1e-10 67.4 102 29.4
TPR.G30652 Trifolium pratense HOM05D001848 ORTHO05D001295 7.1e-10 67.4 70 45.7
A10p12640 Brassica napus HOM05D008197 ORTHO05D001295 9.3e-10 67.0 71 45.1
Gohir.A01G085500 Gossypium hirsutum HOM05D001848 ORTHO05D001295 9.3e-10 67.0 92 39.1
PGSC0003DMG400022295 Solanum tuberosum HOM05D001848 ORTHO05D001295 9.3e-10 67.0 99 35.4
TPR.G23577 Trifolium pratense HOM05D001848 ORTHO05D001295 9.3e-10 67.0 100 34.0
LjContig00272g0007655 Lotus japonicus HOM05D001848 ORTHO05D001295 1.2e-09 66.6 74 40.5
Thecc.01G211300 Theobroma cacao HOM05D001848 ORTHO05D001295 1.2e-09 66.6 92 35.9
Gohir.D01G071850 Gossypium hirsutum HOM05D001848 ORTHO05D001295 1.6e-09 66.2 94 38.3
Gorai.002G094700 Gossypium raimondii HOM05D001848 ORTHO05D001295 1.6e-09 66.2 94 38.3
Lsat_1_v5_gn_7_113461 Lactuca sativa HOM05D001848 ORTHO05D001295 1.6e-09 66.2 105 35.2
PGR031G3783 Punica granatum HOM05D001848 ORTHO05D001295 1.6e-09 66.2 77 42.9
Gorai.007G159400 Gossypium raimondii HOM05D001848 ORTHO05D001295 2.1e-09 65.9 95 33.7
LjContig00272g0023351 Lotus japonicus HOM05D001848 ORTHO05D001295 2.1e-09 65.9 74 40.5
Medtr3g055250 Medicago truncatula HOM05D001848 ORTHO05D001295 2.1e-09 65.9 88 37.5
Thhalv10005129m.g Eutrema salsugineum HOM05D001848 ORTHO05D001295 2.7e-09 65.5 93 36.6
Glyma.07G141300 Glycine max HOM05D001848 ORTHO05D001295 2.7e-09 65.5 96 35.4
PSO210G3247 Papaver somniferum HOM05D001848 ORTHO05D001295 2.7e-09 65.5 97 38.1
PSO832G2089 Papaver somniferum HOM05D001848 ORTHO05D001295 2.7e-09 65.5 97 38.1
ATR0712G087 Amborella trichopoda HOM05D001848 ORTHO05D001295 3.5e-09 65.1 95 36.8
Oeu019626.1 Olea europaea HOM05D001848 ORTHO05D001295 3.5e-09 65.1 96 34.4
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 3.5e-09 65.1 102 33.3
Eucgr.F03514 Eucalyptus grandis HOM05D001848 ORTHO05D001295 4.6e-09 64.7 99 40.4
Glyma.18G191600 Glycine max HOM05D001848 ORTHO05D001295 4.6e-09 64.7 89 38.2
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 4.6e-09 64.7 91 36.3
MD11G1207300 Malus domestica HOM05D001848 ORTHO05D001295 4.6e-09 64.7 86 37.2
ECA236G2606 Erigeron canadensis HOM05D001848 ORTHO05D001295 6.0e-09 64.3 96 36.5
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 6.0e-09 64.3 85 41.2
Gohir.D11G148700 Gossypium hirsutum HOM05D001848 ORTHO05D001295 6.0e-09 64.3 95 32.6
Nn7g37661 Nelumbo nucifera HOM05D001848 ORTHO05D001295 7.9e-09 63.9 95 35.8
Phvul.008G112900 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 7.9e-09 63.9 75 40.0
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 1.0e-08 63.5 96 34.4
Migut.H01781 Erythranthe guttata HOM05D001848 ORTHO05D001295 1.0e-08 63.5 101 34.7
Gohir.A11G142400 Gossypium hirsutum HOM05D001848 ORTHO05D001295 1.0e-08 63.5 95 32.6
arahy.Tifrunner.gnm1.ann1.UI26XR Arachis hypogaea HOM05D001848 ORTHO05D001295 1.3e-08 63.2 93 36.6
Duzib133G1037 Durio zibethinus HOM05D001848 ORTHO05D001295 1.3e-08 63.2 91 33.0
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 1.8e-08 62.8 92 35.9
FAN21G1579 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.8e-08 62.8 85 40.0
Lalb_Chr15g0081801 Lupinus albus HOM05D001848 ORTHO05D001295 1.8e-08 62.8 98 35.7
MBI16_g31711_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 1.8e-08 62.8 89 38.2
Psat2g010560 Pisum sativum HOM05D001848 ORTHO05D001295 1.8e-08 62.8 70 41.4
Sc17g0001750 Simmondsia chinensis HOM05D001848 ORTHO05D001295 1.8e-08 62.8 96 31.2
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 2.3e-08 62.4 92 35.9
Glyma.11G120400 Glycine max HOM05D001848 ORTHO05D001295 2.3e-08 62.4 92 34.8
MD05G1159700 Malus domestica HOM05D001848 ORTHO05D001295 2.3e-08 62.4 92 31.5
Glyma.08G324100 Glycine max HOM05D001848 ORTHO05D001295 3.0e-08 62.0 74 39.2
Peaxi162Scf00235g00085 Petunia axillaris HOM05D001848 ORTHO05D001295 3.0e-08 62.0 98 35.7
AL8G21340 Arabidopsis lyrata HOM05D001848 ORTHO05D001295 3.9e-08 61.6 100 28.0
AUR62028704 Chenopodium quinoa HOM05D001848 ORTHO05D001295 3.9e-08 61.6 78 39.7
Gohir.D05G377400 Gossypium hirsutum HOM05D001848 ORTHO05D001295 3.9e-08 61.6 83 39.8
Gorai.009G445200 Gossypium raimondii HOM05D001848 ORTHO05D001295 3.9e-08 61.6 83 39.8
ClCG09G020940 Citrullus lanatus HOM05D001848 ORTHO05D001295 5.1e-08 61.2 103 34.0
Phvul.006G050100 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 5.1e-08 61.2 91 35.2
VMungo0540G1563 Vigna mungo HOM05D001848 ORTHO05D001295 5.1e-08 61.2 89 36.0
Gohir.A04G010600 Gossypium hirsutum HOM05D001848 ORTHO05D001295 6.7e-08 60.8 83 39.8
HanXRQChr10g0307341 Helianthus annuus HOM05D001848 ORTHO05D001295 6.7e-08 60.8 91 37.4
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 8.7e-08 60.5 92 34.8
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 8.7e-08 60.5 94 30.9
Nitab4.5_0004362g0040 Nicotiana tabacum HOM05D001848 ORTHO05D001295 8.7e-08 60.5 97 34.0
VMungo1383G1433 Vigna mungo HOM05D001848 ORTHO05D001295 8.7e-08 60.5 74 37.8
MELO3C013103.2 Cucumis melo HOM05D001848 ORTHO05D001295 1.1e-07 60.1 93 36.6
FAN15G2800 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.1e-07 60.1 94 34.0
Medtr5g094210 Medicago truncatula HOM05D001848 ORTHO05D001295 1.1e-07 60.1 71 45.1
RcHm_v2.0_Chr6g0282851 Rosa chinensis HOM05D001848 ORTHO05D001295 1.1e-07 60.1 92 32.6
Gohir.A07G159300 Gossypium hirsutum HOM05D001848 ORTHO05D001295 1.5e-07 59.7 88 31.8
Gorai.N003400 Gossypium raimondii HOM05D001848 ORTHO05D001295 1.5e-07 59.7 90 31.1
Manes.11G113800 Manihot esculenta HOM05D001848 ORTHO05D001295 1.5e-07 59.7 93 32.3
Phvul.007G001800 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 1.5e-07 59.7 96 35.4
Rhsim12G0036400 Rhododendron simsii HOM05D001848 ORTHO05D001295 1.5e-07 59.7 90 33.3
Ca_06356_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 1.9e-07 59.3 97 33.0
Ciclev10010463m.g Citrus clementina HOM05D001848 ORTHO05D001295 1.9e-07 59.3 69 42.0
Nitab4.5_0001160g0120 Nicotiana tabacum HOM05D001848 ORTHO05D001295 1.9e-07 59.3 96 31.2
SEGI_37024 Sequoiadendron giganteum HOM05D001848 ORTHO05D001295 1.9e-07 59.3 101 31.7
EL10Ac5g10630 Beta vulgaris HOM05D001848 ORTHO05D001295 2.5e-07 58.9 101 35.6
CsaV3_7G018790 Cucumis sativus L. HOM05D001848 ORTHO05D001295 3.3e-07 58.5 94 36.2
Thecc.07G025000 Theobroma cacao HOM05D001848 ORTHO05D001295 3.3e-07 58.5 87 33.3
FvH4_2g17820 Fragaria vesca HOM05D001848 ORTHO05D001295 4.3e-07 58.2 93 33.3
Zm00001eb305230 Zea mays HOM05D001848 ORTHO05D001295 4.3e-07 58.2 95 37.9
Aqoxy1G04063 Aquilegia oxysepala HOM05D001848 ORTHO05D001295 5.7e-07 57.8 93 36.6
DCAR_013205 Daucus carota HOM05D001848 ORTHO05D001295 5.7e-07 57.8 88 34.1
Lj6g0007816 Lotus japonicus HOM05D001848 ORTHO05D001295 5.7e-07 57.8 90 35.6
Medtr7g052640 Medicago truncatula HOM05D001848 ORTHO05D001295 5.7e-07 57.8 100 30.0
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 5.7e-07 57.8 90 33.3
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 7.4e-07 57.4 95 32.6
Sc17g0001780 Simmondsia chinensis HOM05D001848 ORTHO05D001295 7.4e-07 57.4 64 37.5
TAR626G1904 Trochodendron aralioides HOM05D001848 ORTHO05D001295 7.4e-07 57.4 69 37.7
arahy.Tifrunner.gnm1.ann1.V0MKZ1 Arachis hypogaea HOM05D001848 ORTHO05D001295 9.6e-07 57.0 74 37.8
DCAR_017099 Daucus carota HOM05D001848 ORTHO05D001295 9.6e-07 57.0 99 29.3
Duzib213G0158 Durio zibethinus HOM05D001848 ORTHO05D001295 9.6e-07 57.0 91 34.1
Atru.chr6.3548 Acer truncatum HOM05D001848 ORTHO05D001295 1.3e-06 56.6 96 35.4
Haze_03503 Corylus avellana HOM05D001848 ORTHO05D001295 1.3e-06 56.6 63 36.5
FAN24G2491 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.3e-06 56.6 93 32.3
Gohir.D07G167100 Gossypium hirsutum HOM05D001848 ORTHO05D001295 1.3e-06 56.6 84 31.0
Prupe.8G190500 Prunus persica HOM05D001848 ORTHO05D001295 1.3e-06 56.6 88 34.1
FAN27G0651 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.1e-06 55.8 94 31.9
FAN27G2206 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.1e-06 55.8 94 31.9
PGR083G0807 Punica granatum HOM05D001848 ORTHO05D001295 2.1e-06 55.8 98 33.7
Sc17g0001770 Simmondsia chinensis HOM05D001848 ORTHO05D001295 2.1e-06 55.8 86 30.2
CAN.G337.44 Capsicum annuum HOM05D001848 ORTHO05D001295 3.7e-06 55.1 96 33.3
AUR62028709 Chenopodium quinoa HOM05D001848 ORTHO05D001295 3.7e-06 55.1 95 30.5
COL.COLO4_09753 Corchorus olitorius HOM05D001848 ORTHO05D001295 3.7e-06 55.1 69 40.6
Lalb_Chr01g0002711 Lupinus albus HOM05D001848 ORTHO05D001295 4.8e-06 54.7 94 28.7
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 4.8e-06 54.7 95 31.6
Potri.014G149900 Populus trichocarpa HOM05D001848 ORTHO05D001295 4.8e-06 54.7 93 33.3
SEGI_15170 Sequoiadendron giganteum HOM05D001848 ORTHO05D001295 4.8e-06 54.7 78 38.5
BcaB08g35902 Brassica carinata HOM05D008197 ORTHO05D027059 6.2e-06 54.3 103 34.0
CsaV3_7G018810 Cucumis sativus L. HOM05D001848 ORTHO05D001295 6.2e-06 54.3 97 30.9
TPR.G30659 Trifolium pratense HOM05D001848 ORTHO05D001295 6.2e-06 54.3 91 34.1


User provided reference genes

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