Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 2.4e-55 219.2 125 100.0
BolC3t14084H Brassica oleracea HOM05D004357 ORTHO05D005064 2.6e-46 189.1 113 98.2
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 1.2e-43 180.3 125 74.4
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 2.1e-43 179.5 122 76.2
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 1.0e-34 150.6 124 76.6
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 1.0e-34 150.6 124 76.6
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 1.3e-32 143.7 129 62.0
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 4.8e-32 141.7 129 68.2
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 1.4e-31 140.2 129 71.3
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 1.8e-31 139.8 130 73.8
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 1.8e-31 139.8 125 69.6
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 1.8e-31 139.8 125 69.6
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.6e-30 136.7 130 70.8
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 2.0e-30 136.3 129 71.3
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 2.0e-30 136.3 129 59.7
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 2.7e-30 136.0 126 70.6
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 2.7e-30 136.0 130 65.4
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 3.5e-30 135.6 129 69.0
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 3.5e-30 135.6 129 69.0
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 4.5e-30 135.2 129 58.9
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 4.5e-30 135.2 129 58.9
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 4.5e-30 135.2 129 69.8
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 5.9e-30 134.8 129 68.2
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 8.6e-29 131.0 129 69.8
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 8.6e-29 131.0 129 69.8
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 8.6e-29 131.0 129 69.8
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 1.6e-27 126.7 129 56.6
BcaC01g06349 Brassica carinata HOM05D004357 ORTHO05D005064 5.2e-18 95.1 114 62.3
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 9.8e-17 90.9 128 56.2
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.4e-15 87.0 81 55.6
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.6e-14 83.6 123 48.0
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 2.7e-14 82.8 123 41.5
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 3.5e-14 82.4 124 43.5
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 3.5e-14 82.4 123 44.7
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 3.5e-14 82.4 83 53.0
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 4.6e-14 82.0 123 43.9
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 1.3e-13 80.5 81 51.9
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 1.3e-13 80.5 81 51.9
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 5.0e-13 78.6 71 57.7
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 5.0e-13 78.6 75 54.7
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 6.6e-13 78.2 71 57.7
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-12 77.4 70 58.6
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 1.1e-12 77.4 70 58.6
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 1.1e-12 77.4 70 58.6
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 2.5e-12 76.3 74 55.4
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 7.3e-12 74.7 71 57.7
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 1.2e-11 73.9 70 58.6
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 3.6e-11 72.4 68 60.3
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 3.6e-11 72.4 81 50.6
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 6.2e-11 71.6 71 54.9
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 8.0e-11 71.2 70 55.7
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-10 70.9 70 54.3
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 2.3e-10 69.7 91 45.1
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 3.1e-10 69.3 68 61.8
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 3.1e-10 69.3 75 52.0
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 3.1e-10 69.3 75 52.0
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 3.1e-10 69.3 71 53.5
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 4.0e-10 68.9 70 55.7
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 5.2e-10 68.6 81 48.1
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 8.9e-10 67.8 101 41.6
Sp1g37560 Schrenkiella parvula HOM05D004357 ORTHO05D005064 8.9e-10 67.8 70 54.3
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 1.2e-09 67.4 122 36.9
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 1.2e-09 67.4 71 50.7
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 1.5e-09 67.0 76 44.7
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 1.5e-09 67.0 70 51.4
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.5e-09 67.0 70 51.4
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.5e-09 67.0 70 51.4
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.5e-09 67.0 70 51.4
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.5e-09 67.0 70 51.4
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 1.5e-09 67.0 75 53.3
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 2.0e-09 66.6 87 47.1
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 2.6e-09 66.2 92 41.3
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 2.6e-09 66.2 79 58.2
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 2.6e-09 66.2 72 50.0
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 2.6e-09 66.2 71 50.7
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 3.4e-09 65.9 73 45.2
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 3.4e-09 65.9 77 48.1
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 3.4e-09 65.9 70 51.4
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 3.4e-09 65.9 70 55.7
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 4.4e-09 65.5 70 55.7
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 5.8e-09 65.1 70 55.7
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 5.8e-09 65.1 71 52.1
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 7.5e-09 64.7 85 51.8
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 9.8e-09 64.3 69 52.2
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 9.8e-09 64.3 69 49.3
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 9.8e-09 64.3 69 49.3
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 9.8e-09 64.3 71 50.7
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.3e-08 63.9 121 40.5
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 1.3e-08 63.9 73 47.9
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 1.3e-08 63.9 73 47.9
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 1.7e-08 63.5 71 49.3
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 1.7e-08 63.5 68 55.9
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 1.7e-08 63.5 70 54.3
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 2.9e-08 62.8 98 39.8
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 2.9e-08 62.8 125 48.8
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 4.9e-08 62.0 70 57.1
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 4.9e-08 62.0 87 43.7
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 6.4e-08 61.6 121 39.7
Lalb_Chr20g0115381 Lupinus albus HOM05D004357 ORTHO05D005064 6.4e-08 61.6 71 49.3
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 6.4e-08 61.6 77 48.1
Haze_09713 Corylus avellana HOM05D004357 ORTHO05D005064 8.3e-08 61.2 73 47.9
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 8.3e-08 61.2 68 50.0
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 8.3e-08 61.2 78 44.9
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 8.3e-08 61.2 76 48.7
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 1.1e-07 60.8 72 44.4
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.1e-07 60.8 76 50.0
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 1.1e-07 60.8 70 52.9
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 1.4e-07 60.5 68 48.5
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 1.9e-07 60.1 136 34.6
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 1.9e-07 60.1 73 49.3
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 2.4e-07 59.7 77 44.2
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 2.4e-07 59.7 78 47.4
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 3.2e-07 59.3 70 51.4
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 7.1e-07 58.2 70 47.1
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 7.1e-07 58.2 69 47.8
AUR62020394 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.2e-06 57.4 69 42.0
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 1.2e-06 57.4 128 35.2
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 1.6e-06 57.0 70 45.7
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 1.6e-06 57.0 122 36.1
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 1.6e-06 57.0 74 44.6
BcaB01g04367 Brassica carinata HOM05D004357 ORTHO05D005064 2.1e-06 56.6 30 80.0
Nitab4.5_0011467g0030 Nicotiana tabacum HOM05D004357 ORTHO05D005064 3.5e-06 55.8 100 42.0
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 4.6e-06 55.5 70 47.1
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 4.6e-06 55.5 119 32.8
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 4.6e-06 55.5 119 33.6
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 6.0e-06 55.1 70 47.1
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 6.0e-06 55.1 70 47.1
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 6.0e-06 55.1 70 47.1
TAR627G1104 Trochodendron aralioides HOM05D004357 ORTHO05D005064 6.0e-06 55.1 71 42.3
TAR629G2714 Trochodendron aralioides HOM05D004357 ORTHO05D005064 6.0e-06 55.1 69 44.9
Medtr3g053240 Medicago truncatula HOM05D004357 ORTHO05D005064 7.8e-06 54.7 69 47.8


User provided reference genes

Program Settings