Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 4.8e-58 227.6 117 100.0
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 4.8e-42 174.5 119 79.8
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 9.1e-41 170.2 114 81.6
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 2.0e-40 169.1 120 80.0
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 5.9e-40 167.5 120 79.2
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 5.5e-38 161.0 120 79.2
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 1.7e-34 149.4 130 67.7
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 8.3e-34 147.1 139 64.0
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 9.2e-33 143.7 136 64.7
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 1.7e-31 139.4 128 66.4
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 2.3e-31 139.0 136 64.0
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 6.1e-29 131.0 133 60.2
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 5.4e-25 117.9 120 59.2
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 9.2e-25 117.1 112 56.2
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 1.1e-22 110.2 109 63.3
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 1.6e-21 106.3 97 60.8
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 2.8e-21 105.5 129 49.6
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 3.6e-21 105.1 117 53.8
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 2.3e-20 102.4 121 53.7
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 5.2e-20 101.3 110 55.5
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 5.2e-20 101.3 110 55.5
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 6.8e-20 100.9 110 55.5
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 2.6e-19 99.0 116 55.2
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 1.3e-18 96.7 115 52.2
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 2.2e-18 95.9 119 50.4
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 1.9e-17 92.8 110 50.9
Aa31LG5G12020 Aethionema arabicum HOM05D009587 ORTHO05D004912 3.5e-16 88.6 118 49.2
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 7.8e-16 87.4 112 44.6
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 5.6e-14 81.3 114 44.7
BcaB01g04337 Brassica carinata HOM05D009587 ORTHO05D004912 9.5e-14 80.5 56 78.6
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 3.6e-13 78.6 117 41.0
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 4.4e-11 71.6 116 39.7
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 5.8e-11 71.2 100 45.0
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 2.2e-10 69.3 96 45.8
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 2.9e-10 68.9 111 43.2
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 6.4e-10 67.8 118 37.3
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 1.4e-09 66.6 102 42.2
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 1.4e-09 66.6 121 40.5
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 1.9e-09 66.2 118 35.6
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 1.9e-09 66.2 100 43.0
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 1.9e-09 66.2 105 41.9
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 3.2e-09 65.5 97 45.4
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 7.1e-09 64.3 112 42.9
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 7.1e-09 64.3 108 41.7
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 7.1e-09 64.3 91 45.1
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 7.1e-09 64.3 91 45.1
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 9.2e-09 63.9 104 42.3
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 9.2e-09 63.9 100 43.0
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 1.2e-08 63.5 109 43.1
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 1.2e-08 63.5 100 42.0
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 2.1e-08 62.8 97 44.3
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 2.1e-08 62.8 118 39.0
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 2.7e-08 62.4 108 40.7
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 2.7e-08 62.4 117 35.9
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 3.5e-08 62.0 106 38.7
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 3.5e-08 62.0 104 35.6
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 3.5e-08 62.0 134 36.6
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 3.5e-08 62.0 117 38.5
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 3.5e-08 62.0 97 37.1
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 4.6e-08 61.6 91 47.3
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 4.6e-08 61.6 94 42.6
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 4.6e-08 61.6 110 38.2
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 6.0e-08 61.2 118 39.0
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 6.0e-08 61.2 105 38.1
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 6.0e-08 61.2 107 35.5
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 7.8e-08 60.8 107 38.3
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 7.8e-08 60.8 107 38.3
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 7.8e-08 60.8 85 42.4
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 1.0e-07 60.5 117 35.9
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.0e-07 60.5 102 40.2
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.0e-07 60.5 97 37.1
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.3e-07 60.1 102 40.2
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 1.7e-07 59.7 90 44.4
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.3e-07 59.3 102 40.2
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 2.3e-07 59.3 103 41.7
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 3.0e-07 58.9 102 37.3
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 3.0e-07 58.9 102 39.2
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 3.0e-07 58.9 122 41.8
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 3.0e-07 58.9 118 38.1
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 3.9e-07 58.5 97 41.2
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 6.6e-07 57.8 102 36.3
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 6.6e-07 57.8 95 40.0
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 8.6e-07 57.4 123 35.8
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 8.6e-07 57.4 123 35.8
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 1.5e-06 56.6 126 34.9
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 1.5e-06 56.6 96 41.7
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 1.5e-06 56.6 79 43.0
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.9e-06 56.2 103 38.8
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 1.9e-06 56.2 85 44.7
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 2.5e-06 55.8 105 35.2
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 2.5e-06 55.8 103 33.0
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 2.5e-06 55.8 97 35.1
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 3.3e-06 55.5 105 35.2
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 4.3e-06 55.1 103 40.8
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 5.6e-06 54.7 117 35.9
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.6e-06 54.7 101 33.7
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 7.3e-06 54.3 103 33.0
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 7.3e-06 54.3 111 36.9
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 7.3e-06 54.3 90 41.1


User provided reference genes

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