Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06269 Brassica carinata HOM05D006094 ORTHO05D039092 2.8e-70 268.5 135 100.0
BolC3t14160H Brassica oleracea HOM05D006094 ORTHO05D039092 3.6e-33 145.2 70 100.0
BcaB01g04302 Brassica carinata HOM05D000166 ORTHO05D002123 1.3e-30 136.7 157 49.7
BcaC03g14300 Brassica carinata HOM05D006094 ORTHO05D007761 9.3e-29 130.6 109 64.2
BolC2t07786H Brassica oleracea HOM05D006094 ORTHO05D007761 9.3e-29 130.6 109 64.2
BcaC04g20323 Brassica carinata HOM05D006094 ORTHO05D007761 1.2e-28 130.2 109 63.3
A02p10140 Brassica napus HOM05D006094 ORTHO05D007761 1.2e-28 130.2 109 63.3
A10p11820 Brassica napus HOM05D006094 ORTHO05D007761 1.2e-28 130.2 109 63.3
C02p16840 Brassica napus HOM05D006094 ORTHO05D007761 1.2e-28 130.2 109 63.3
C09p44940 Brassica napus HOM05D006094 ORTHO05D007761 1.2e-28 130.2 109 63.3
BolC9t57371H Brassica oleracea HOM05D006094 ORTHO05D007761 1.2e-28 130.2 109 63.3
BraA02t06085Z Brassica rapa HOM05D006094 ORTHO05D007761 1.2e-28 130.2 109 63.3
BraA10t43280Z Brassica rapa HOM05D006094 ORTHO05D007761 1.2e-28 130.2 109 63.3
AL8G30060 Arabidopsis lyrata HOM05D006094 ORTHO05D007761 2.7e-28 129.0 109 62.4
Carub.0008s1487 Capsella rubella HOM05D006094 ORTHO05D007761 3.5e-28 128.6 109 61.5
Thhalv10014723m.g Eutrema salsugineum HOM05D006094 ORTHO05D007761 3.5e-28 128.6 109 61.5
BcaB05g22149 Brassica carinata HOM05D006094 ORTHO05D007761 6.0e-28 127.9 109 62.4
Sp6g16570 Schrenkiella parvula HOM05D006094 ORTHO05D007761 7.8e-28 127.5 116 57.8
CARHR267890 Cardamine hirsuta HOM05D006094 ORTHO05D007761 1.0e-27 127.1 109 61.5
AT5G54600 Arabidopsis thaliana HOM05D006094 ORTHO05D007761 1.7e-27 126.3 109 61.5
Aa31LG3G10550 Aethionema arabicum HOM05D006094 ORTHO05D007761 3.0e-27 125.6 116 56.0
A03p14540 Brassica napus HOM05D006094 ORTHO05D007761 3.9e-27 125.2 116 61.2
THA.LOC104809288 Tarenaya hassleriana HOM05D006094 ORTHO05D007761 2.6e-23 112.5 109 52.3
Cpa.g.sc97.91 Carica papaya HOM05D006094 ORTHO05D007761 1.3e-22 110.2 116 49.1
Gohir.D01G059600 Gossypium hirsutum HOM05D006094 ORTHO05D007761 1.7e-22 109.8 109 53.2
Gorai.002G080800 Gossypium raimondii HOM05D006094 ORTHO05D007761 1.7e-22 109.8 109 53.2
Eucgr.F03416 Eucalyptus grandis HOM05D006094 ORTHO05D007761 4.9e-22 108.2 108 49.1
Gohir.A01G073000 Gossypium hirsutum HOM05D006094 ORTHO05D007761 4.9e-22 108.2 109 52.3
CiPaw.11G182300 Carya illinoinensis HOM05D006094 ORTHO05D007761 1.4e-21 106.7 108 50.0
Cfa020459 Carpinus fangiana HOM05D006094 ORTHO05D007761 2.4e-21 105.9 108 50.0
COL.COLO4_09549 Corchorus olitorius HOM05D006094 ORTHO05D007761 2.4e-21 105.9 109 48.6
Duzib213G0969 Durio zibethinus HOM05D006094 ORTHO05D007761 2.4e-21 105.9 109 51.4
Ah.16g106570 Amaranthus hybridus HOM05D006094 ORTHO05D007761 3.2e-21 105.5 116 47.4
Haze_09585 Corylus avellana HOM05D006094 ORTHO05D007761 3.2e-21 105.5 108 50.0
MELO3C031870.2 Cucumis melo HOM05D006094 ORTHO05D007761 3.2e-21 105.5 108 49.1
Atru.chr2.3143 Acer truncatum HOM05D006094 ORTHO05D007761 9.3e-21 104.0 110 47.3
DCAR_012725 Daucus carota HOM05D006094 ORTHO05D007761 1.2e-20 103.6 108 47.2
PGR031G3561 Punica granatum HOM05D006094 ORTHO05D007761 1.2e-20 103.6 108 47.2
MD11G1229300 Malus domestica HOM05D006094 ORTHO05D007761 1.6e-20 103.2 108 47.2
Sc03g0009180 Simmondsia chinensis HOM05D006094 ORTHO05D007761 1.6e-20 103.2 116 46.6
Prupe.4G200400 Prunus persica HOM05D006094 ORTHO05D007761 2.1e-20 102.8 108 46.3
TPR.G36823 Trifolium pratense HOM05D006094 ORTHO05D007761 2.1e-20 102.8 105 49.5
AUR62029246 Chenopodium quinoa HOM05D006094 ORTHO05D007761 2.7e-20 102.4 107 44.9
Medtr2g082410 Medicago truncatula HOM05D006094 ORTHO05D007761 2.7e-20 102.4 108 48.1
MD03G1214300 Malus domestica HOM05D006094 ORTHO05D007761 3.5e-20 102.1 108 46.3
RcHm_v2.0_Chr5g0037061 Rosa chinensis HOM05D006094 ORTHO05D007761 3.5e-20 102.1 108 46.3
Ciclev10009584m.g Citrus clementina HOM05D006094 ORTHO05D007761 4.6e-20 101.7 110 49.1
FvH4_3g21600 Fragaria vesca HOM05D006094 ORTHO05D007761 4.6e-20 101.7 108 45.4
FAN11G0194 Fragaria x ananassa HOM05D006094 ORTHO05D007761 4.6e-20 101.7 108 45.4
FAN16G1255 Fragaria x ananassa HOM05D006094 ORTHO05D007761 4.6e-20 101.7 108 45.4
FAN25G1510 Fragaria x ananassa HOM05D006094 ORTHO05D007761 4.6e-20 101.7 108 45.4
QL08p014044 Quercus lobata HOM05D006094 ORTHO05D007761 4.6e-20 101.7 108 48.1
EL10Ac4g07994 Beta vulgaris HOM05D006094 ORTHO05D007761 6.0e-20 101.3 109 45.0
Ca_01774_v3 Cicer arietinum L. HOM05D006094 ORTHO05D007761 6.0e-20 101.3 108 48.1
Manes.03G121040 Manihot esculenta HOM05D006094 ORTHO05D007761 7.9e-20 100.9 116 44.0
Glyma.12G215900 Glycine max HOM05D006094 ORTHO05D007761 1.0e-19 100.5 108 46.3
Glyma.13G285600 Glycine max HOM05D006094 ORTHO05D007761 1.0e-19 100.5 105 46.7
Thecc.07G056100 Theobroma cacao HOM05D006094 ORTHO05D007761 1.0e-19 100.5 109 46.8
Nn1g06934 Nelumbo nucifera HOM05D006094 ORTHO05D007761 1.3e-19 100.1 114 42.1
Lsat_1_v5_gn_9_94980 Lactuca sativa HOM05D006094 ORTHO05D007761 1.8e-19 99.8 116 43.1
HPP92_013305 Vanilla planifolia HOM05D006094 ORTHO05D007761 1.8e-19 99.8 110 48.2
CANSAT11G1866 Cannabis sativa HOM05D006094 ORTHO05D007761 2.3e-19 99.4 108 49.1
Sed0023243 Sechium edule HOM05D006094 ORTHO05D007761 2.3e-19 99.4 108 46.3
TWI39G1263 Tripterygium wilfordii HOM05D006094 ORTHO05D007761 2.3e-19 99.4 108 45.4
CDE02G2884 Ceratophyllum demersum HOM05D006094 ORTHO05D007761 3.0e-19 99.0 113 46.9
Psat5g249200 Pisum sativum HOM05D006094 ORTHO05D007761 3.0e-19 99.0 108 46.3
Potri.001G415400 Populus trichocarpa HOM05D006094 ORTHO05D007761 3.0e-19 99.0 108 46.3
ClCG10G006290 Citrullus lanatus HOM05D006094 ORTHO05D007761 3.9e-19 98.6 108 45.4
Rhsim02G0093900 Rhododendron simsii HOM05D006094 ORTHO05D007761 3.9e-19 98.6 116 43.1
RhsimUnG0254000 Rhododendron simsii HOM05D006094 ORTHO05D007761 3.9e-19 98.6 116 43.1
arahy.Tifrunner.gnm1.ann1.KVK1VL Arachis hypogaea HOM05D006094 ORTHO05D007761 5.1e-19 98.2 109 45.0
SalBow7G2145 Salvia bowleyana HOM05D006094 ORTHO05D007761 5.1e-19 98.2 108 44.4
arahy.Tifrunner.gnm1.ann1.WIG9V3 Arachis hypogaea HOM05D006094 ORTHO05D007761 6.7e-19 97.8 109 44.0
CDE05G2809 Ceratophyllum demersum HOM05D006094 ORTHO05D007761 6.7e-19 97.8 109 45.9
AUR62034219 Chenopodium quinoa HOM05D006094 ORTHO05D007761 6.7e-19 97.8 107 43.9
MBI19_g03677_MAGBIO Magnolia biondii HOM05D006094 ORTHO05D007761 8.7e-19 97.4 108 47.2
Sabra16G0282000 Salix brachista HOM05D006094 ORTHO05D007761 8.7e-19 97.4 108 46.3
SEGI_26346 Sequoiadendron giganteum HOM05D006094 ORTHO05D007761 8.7e-19 97.4 109 43.1
Lj3g0006112 Lotus japonicus HOM05D006094 ORTHO05D007761 1.1e-18 97.1 108 43.5
SGA_v2.0_scaffold9G05013 Striga asiatica HOM05D006094 ORTHO05D007761 1.5e-18 96.7 116 43.1
Dinv22319 Davidia involucrata HOM05D006094 ORTHO05D007761 1.9e-18 96.3 108 42.6
vmacro22727 Vaccinium macrocarpon HOM05D006094 ORTHO05D007761 1.9e-18 96.3 108 47.2
vmacro22759 Vaccinium macrocarpon HOM05D006094 ORTHO05D007761 1.9e-18 96.3 108 47.2
Aqoxy1G03827 Aquilegia oxysepala HOM05D006094 ORTHO05D007761 2.5e-18 95.9 114 43.9
TWI38G1667 Tripterygium wilfordii HOM05D006094 ORTHO05D007761 2.5e-18 95.9 108 43.5
ATR1088G047 Amborella trichopoda HOM05D006094 ORTHO05D007761 3.3e-18 95.5 114 42.1
Migut.H01870 Erythranthe guttata HOM05D006094 ORTHO05D007761 3.3e-18 95.5 106 46.2
Phvul.005G090100 Phaseolus vulgaris HOM05D006094 ORTHO05D007761 3.3e-18 95.5 109 42.2
HanXRQChr03g0076231 Helianthus annuus HOM05D006094 ORTHO05D007761 4.3e-18 95.1 109 42.2
TAR627G0546 Trochodendron aralioides HOM05D006094 ORTHO05D007761 5.6e-18 94.7 108 40.7
Hma1.2p1_1054F.1_g252540 Hydrangea macrophylla HOM05D006094 ORTHO05D007761 7.4e-18 94.4 108 42.6
Hund02149 Selenicereus undatus HOM05D006094 ORTHO05D007761 7.4e-18 94.4 110 47.3
VMungo1080G1399 Vigna mungo HOM05D006094 ORTHO05D007761 9.6e-18 94.0 104 42.3
GSVIVG01014572001 Vitis vinifera HOM05D006094 ORTHO05D007761 9.6e-18 94.0 108 45.4
Lalb_Chr14g0366021 Lupinus albus HOM05D006094 ORTHO05D007761 1.3e-17 93.6 116 41.4
SMO356G0620 Selaginella moellendorffii HOM05D006094 ORTHO05D007761 2.1e-17 92.8 103 47.6
Zm00001eb225380 Zea mays HOM05D006094 ORTHO05D007761 2.1e-17 92.8 108 43.5
Actinidia10699 Actinidia chinensis HOM05D006094 ORTHO05D007761 3.6e-17 92.0 108 42.6
Pp3c15_17530 Physcomitrium patens HOM05D006094 ORTHO05D007761 4.8e-17 91.7 111 42.3
Nitab4.5_0000552g0050 Nicotiana tabacum HOM05D006094 ORTHO05D007761 6.2e-17 91.3 108 43.5
Cc05_g13100 Coffea canephora HOM05D006094 ORTHO05D007761 8.1e-17 90.9 110 43.6
Nitab4.5_0006304g0020 Nicotiana tabacum HOM05D006094 ORTHO05D007761 8.1e-17 90.9 108 42.6
PSO210G7521 Papaver somniferum HOM05D006094 ORTHO05D007761 8.1e-17 90.9 110 40.9
PSO832G4295 Papaver somniferum HOM05D006094 ORTHO05D007761 8.1e-17 90.9 110 40.9
MSTRG.12948 Avicennia marina HOM05D006094 ORTHO05D007761 1.1e-16 90.5 116 40.5
Peaxi162Scf01086g00024 Petunia axillaris HOM05D006094 ORTHO05D007761 1.1e-16 90.5 108 42.6
Pp3c9_9200 Physcomitrium patens HOM05D006094 ORTHO05D007761 1.1e-16 90.5 110 40.0
Nitab4.5_0002342g0150 Nicotiana tabacum HOM05D006094 ORTHO05D007761 2.4e-16 89.4 108 40.7
Nitab4.5_0002229g0050 Nicotiana tabacum HOM05D006094 ORTHO05D007761 3.1e-16 89.0 108 39.8
Solyc07g063960.3 Solanum lycopersicum HOM05D006094 ORTHO05D007761 3.1e-16 89.0 108 43.5
Sopen07g032100 Solanum pennellii HOM05D006094 ORTHO05D007761 4.0e-16 88.6 108 42.6
PGSC0003DMG400019266 Solanum tuberosum HOM05D006094 ORTHO05D007761 4.0e-16 88.6 108 42.6
Actinidia35309 Actinidia chinensis HOM05D006094 ORTHO05D007761 6.9e-16 87.8 107 41.1
Os06g0683200 Oryza sativa ssp. japonica HOM05D006094 ORTHO05D007761 1.5e-15 86.7 108 39.8
Lj1A861T62 Lonicera japonica HOM05D006094 ORTHO05D007761 2.6e-15 85.9 108 39.8
Mapoly0006s0262 Marchantia polymorpha HOM05D006094 ORTHO05D007761 2.6e-15 85.9 112 42.0
BcaB08g35821 Brassica carinata HOM05D006094 ORTHO05D007761 3.4e-15 85.5 99 50.5
CAN.G1110.18 Capsicum annuum HOM05D006094 ORTHO05D007761 5.8e-15 84.7 110 39.1
PGSC0003DMG400025013 Solanum tuberosum HOM05D006094 ORTHO05D007761 7.6e-15 84.3 108 38.9
unitig_0.g2378 Utricularia gibba HOM05D006094 ORTHO05D007761 7.6e-15 84.3 110 39.1
CBR_g8903 Chara braunii HOM05D006094 ORTHO05D007761 2.7e-12 75.9 118 37.3
ECA240G4288 Erigeron canadensis HOM05D000089 ORTHO05D007761 1.8e-11 73.2 125 36.8
FAN21G3550 Fragaria x ananassa HOM05D006094 ORTHO05D007761 1.5e-10 70.1 82 40.2
Cre16.g652550 Chlamydomonas reinhardtii HOM05D006094 ORTHO05D007761 7.6e-07 57.8 94 34.0
MCO02G437 Micromonas commoda HOM05D006094 ORTHO05D007761 1.0e-06 57.4 92 39.1
Migut.H01869 Erythranthe guttata HOM05D006094 ORTHO05D007761 8.4e-06 54.3 55 43.6


User provided reference genes

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