Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 4.0e-219 764.6 430 100.0
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 6.9e-187 657.5 616 67.5
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 1.5e-181 639.8 633 65.4
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 1.5e-178 629.8 610 66.1
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 7.7e-178 627.5 615 65.4
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 6.3e-172 607.8 630 63.3
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 2.0e-162 576.2 444 79.3
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.9e-139 500.0 681 52.0
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.6e-133 479.6 630 52.1
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.4e-131 473.8 640 53.1
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 1.2e-127 460.7 686 47.1
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.9e-124 449.5 680 46.3
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 1.1e-123 447.6 595 53.4
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.5e-117 427.2 682 46.5
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 5.8e-117 425.2 682 46.5
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 6.4e-116 421.8 673 46.5
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 3.0e-97 359.8 666 42.8
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 4.0e-86 322.8 704 38.8
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 7.1e-83 312.0 646 38.4
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.5e-77 294.3 293 59.7
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 2.6e-77 293.5 293 60.1
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.1e-74 283.9 740 34.9
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 6.1e-74 282.3 724 36.0
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 7.9e-74 282.0 736 34.1
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 7.9e-74 282.0 725 36.0
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 1.8e-73 280.8 727 35.9
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 3.7e-71 273.1 737 35.1
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 8.2e-71 271.9 745 33.8
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.4e-70 271.2 737 32.0
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 1.8e-70 270.8 735 35.6
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 2.4e-70 270.4 728 34.8
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 3.1e-70 270.0 726 32.6
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 4.1e-70 269.6 740 32.8
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 4.1e-70 269.6 686 35.3
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 5.3e-70 269.2 743 33.6
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 5.3e-70 269.2 738 32.7
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 2.6e-69 266.9 738 32.7
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 2.6e-69 266.9 728 32.6
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.4e-69 266.5 674 33.1
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 4.5e-69 266.2 726 35.1
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 7.7e-69 265.4 737 33.0
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 1.3e-68 264.6 726 32.6
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.7e-68 264.2 741 34.1
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.7e-68 264.2 738 32.5
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 2.9e-68 263.5 709 34.4
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.9e-68 263.5 741 32.5
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 8.5e-68 261.9 735 32.4
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.4e-67 261.2 709 34.1
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.4e-67 261.2 709 34.6
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 2.5e-67 260.4 644 35.4
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 2.5e-67 260.4 738 32.2
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 5.5e-67 259.2 739 34.8
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 9.4e-67 258.5 737 32.0
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 9.4e-67 258.5 680 32.9
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 9.4e-67 258.5 728 32.8
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 9.4e-67 258.5 737 32.2
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.2e-66 258.1 722 32.1
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 1.6e-66 257.7 734 33.2
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.7e-66 256.9 736 33.7
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 2.7e-66 256.9 729 33.7
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 4.7e-66 256.1 670 34.0
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 4.7e-66 256.1 724 35.5
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 4.7e-66 256.1 727 32.0
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 6.1e-66 255.8 736 32.3
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.0e-65 255.0 693 33.2
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.0e-65 255.0 640 35.0
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 1.4e-65 254.6 697 34.9
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-65 254.6 746 34.9
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.3e-65 253.8 742 32.9
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 2.3e-65 253.8 714 33.5
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 2.3e-65 253.8 732 34.0
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.9e-65 253.1 737 34.6
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 3.9e-65 253.1 704 32.5
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 5.1e-65 252.7 673 34.3
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.7e-65 252.3 736 34.9
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.5e-64 251.1 740 31.9
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 4.4e-64 249.6 635 35.7
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 4.4e-64 249.6 738 34.6
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 7.4e-64 248.8 729 34.2
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 2.2e-63 247.3 649 34.4
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.1e-62 245.0 731 31.7
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.4e-62 244.6 717 31.5
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 1.4e-62 244.6 734 32.4
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 4.1e-62 243.0 719 31.3
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 7.0e-62 242.3 733 33.6
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 9.1e-62 241.9 734 31.7
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.2e-61 241.5 219 65.3
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.2e-61 241.5 714 32.9
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 3.5e-61 240.0 703 31.9
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 3.5e-61 240.0 777 30.8
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 7.7e-61 238.8 735 32.9
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.3e-60 238.0 737 31.2
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 2.2e-60 237.3 701 31.2
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 2.2e-60 237.3 728 31.5
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 2.9e-60 236.9 735 33.3
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.8e-60 236.5 733 33.6
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 8.5e-60 235.3 728 32.6
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.5e-59 234.6 724 29.8
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.9e-59 234.2 272 51.5
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 2.5e-59 233.8 735 33.2
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.5e-59 233.8 637 34.9
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 3.2e-59 233.4 707 32.5
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 4.7e-58 229.6 758 31.5
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 6.1e-58 229.2 634 33.0
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 1.0e-57 228.4 699 31.5
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.0e-57 228.4 738 29.7
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.0e-57 228.4 690 33.0
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.7e-57 225.7 734 33.1
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 8.8e-57 225.3 629 34.0
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 2.6e-56 223.8 287 51.6
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.7e-56 222.6 715 30.1
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 9.7e-56 221.9 740 29.3
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 3.7e-55 219.9 744 30.0
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.1e-54 218.4 706 30.7
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.4e-54 218.0 757 31.2
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 5.3e-54 216.1 732 30.2
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.2e-53 214.9 718 30.8
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.0e-52 211.8 746 28.4
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 2.2e-52 210.7 693 31.7
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 2.9e-52 210.3 757 31.0
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 6.5e-52 209.1 735 32.1
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 8.5e-52 208.8 578 33.0
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.5e-51 207.2 733 32.2
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 4.2e-51 206.5 610 30.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.5e-51 206.1 733 31.9
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.6e-50 204.5 734 28.3
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 2.7e-50 203.8 715 28.7
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.3e-49 200.7 714 29.4
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 3.0e-49 200.3 727 30.7
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 3.0e-49 200.3 724 28.6
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 4.0e-49 199.9 658 30.2
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.4e-48 196.4 715 29.9
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.2e-47 194.1 643 33.1
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 6.3e-47 192.6 684 28.1
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-45 188.0 227 52.0
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.6e-45 188.0 227 52.0
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 1.7e-44 184.5 220 58.2
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 6.8e-41 172.6 581 30.1
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 4.9e-39 166.4 756 28.6
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 2.3e-36 157.5 719 27.8
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 9.5e-35 152.1 547 29.1
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.4e-33 148.3 137 64.2
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 1.8e-33 147.9 234 46.2
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 2.4e-30 137.5 104 76.0
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 3.2e-30 137.1 104 76.0
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.2e-29 135.2 213 46.5
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 3.9e-28 130.2 218 44.5
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 3.9e-28 130.2 107 68.2
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.1e-27 128.6 151 56.3
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 3.3e-27 127.1 202 44.6
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.2e-26 125.2 213 37.6
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 8.1e-18 95.9 113 50.4
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 2.6e-16 90.9 190 35.8
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 7.1e-14 82.8 115 49.6
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.2e-13 82.0 415 25.1
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 3.9e-12 77.0 77 54.5
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 6.6e-12 76.3 123 40.7
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 1.1e-11 75.5 149 37.6
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 7.3e-11 72.8 44 79.5
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 2.1e-10 71.2 59 71.2
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 6.2e-10 69.7 75 53.3
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 8.9e-09 65.9 33 93.9
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 7.6e-08 62.8 217 31.3
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 9.9e-08 62.4 115 35.7
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.1e-06 58.9 60 56.7
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 4.1e-06 57.0 115 33.9


User provided reference genes

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