Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06213 Brassica carinata HOM05D002932 ORTHO05D003208 1.1e-127 459.9 231 100.0
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 9.7e-127 456.8 230 99.6
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 9.7e-127 456.8 230 99.6
A03p15470 Brassica napus HOM05D002932 ORTHO05D003208 1.4e-120 436.4 232 94.4
BraA03t10842Z Brassica rapa HOM05D002932 ORTHO05D003208 1.4e-120 436.4 232 94.4
BcaB01g04222 Brassica carinata HOM05D002932 ORTHO05D003208 3.9e-112 408.3 233 89.3
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 1.8e-104 382.9 236 83.9
A10p10380 Brassica napus HOM05D002932 ORTHO05D003208 5.3e-101 371.3 230 82.6
C09p42630 Brassica napus HOM05D002932 ORTHO05D003208 5.3e-101 371.3 230 82.6
BolC9t57139H Brassica oleracea HOM05D002932 ORTHO05D003208 5.3e-101 371.3 230 82.6
BraA10t43121Z Brassica rapa HOM05D002932 ORTHO05D003208 5.3e-101 371.3 230 82.6
BcaC04g20524 Brassica carinata HOM05D002932 ORTHO05D003208 1.2e-97 360.1 230 81.7
Thhalv10014576m.g Eutrema salsugineum HOM05D002932 ORTHO05D003208 3.6e-97 358.6 234 81.2
BolC2t08047H Brassica oleracea HOM05D002932 ORTHO05D003208 8.0e-97 357.5 232 81.0
BcaB08g35654 Brassica carinata HOM05D002932 ORTHO05D003208 4.0e-96 355.1 236 78.0
A02p11520 Brassica napus HOM05D002932 ORTHO05D003208 5.2e-96 354.8 232 80.6
BcaB05g21990 Brassica carinata HOM05D002932 ORTHO05D003208 2.6e-95 352.4 237 81.0
BcaC03g14485 Brassica carinata HOM05D002932 ORTHO05D003208 5.7e-95 351.3 223 83.0
BraA02t06216Z Brassica rapa HOM05D002932 ORTHO05D003208 1.3e-94 350.1 225 82.2
C02p19170 Brassica napus HOM05D002932 ORTHO05D003208 2.2e-94 349.4 223 82.5
CARHR265860 Cardamine hirsuta HOM05D002932 ORTHO05D003208 5.3e-93 344.7 240 76.2
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 2.7e-92 342.4 237 75.9
AL8G27370 Arabidopsis lyrata HOM05D002932 ORTHO05D003208 8.0e-89 330.9 235 73.6
Carub.0008s1309 Capsella rubella HOM05D002932 ORTHO05D003208 7.3e-74 281.2 239 66.1
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 2.7e-52 209.5 245 53.9
Aa31LG3G9150 Aethionema arabicum HOM05D002932 ORTHO05D003208 1.3e-51 207.2 230 56.5
THA.LOC104825123 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 4.3e-50 202.2 238 54.2
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 3.8e-38 162.5 235 46.8
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 3.2e-37 159.5 226 47.8
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 7.1e-37 158.3 222 47.3
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 2.1e-36 156.8 260 43.1
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.1e-36 156.8 260 43.1
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 3.5e-36 156.0 229 48.0
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 3.5e-36 156.0 223 47.1
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 4.6e-36 155.6 243 44.9
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 7.8e-36 154.8 225 48.0
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 1.0e-35 154.5 231 44.2
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 1.0e-35 154.5 249 43.0
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.3e-35 154.1 260 42.3
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.3e-35 154.1 260 42.3
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 1.1e-34 151.0 232 43.5
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.5e-34 150.6 222 46.4
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 2.5e-34 149.8 227 45.4
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 7.3e-34 148.3 259 42.9
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 7.3e-34 148.3 253 41.5
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 9.6e-34 147.9 219 43.8
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 1.3e-33 147.5 223 46.2
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 1.6e-33 147.1 237 45.1
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 2.1e-33 146.7 222 45.5
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 2.1e-33 146.7 236 42.8
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 3.6e-33 146.0 223 46.2
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 6.2e-33 145.2 243 41.2
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 8.1e-33 144.8 223 45.7
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 1.4e-32 144.1 224 45.1
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 2.4e-32 143.3 224 41.5
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 2.4e-32 143.3 228 42.5
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 3.1e-32 142.9 226 45.6
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 3.1e-32 142.9 233 44.6
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 5.3e-32 142.1 230 42.6
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 1.2e-31 141.0 221 45.2
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 1.2e-31 141.0 224 42.9
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 2.0e-31 140.2 227 44.9
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.0e-31 140.2 249 41.8
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.0e-31 140.2 249 41.8
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 2.0e-31 140.2 233 44.2
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 3.4e-31 139.4 224 43.3
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 3.4e-31 139.4 225 43.1
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 4.5e-31 139.0 224 42.4
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 4.5e-31 139.0 219 44.7
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 4.5e-31 139.0 246 41.9
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 5.8e-31 138.7 226 43.8
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 7.6e-31 138.3 247 42.9
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 7.6e-31 138.3 226 42.9
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 7.6e-31 138.3 238 42.9
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 9.9e-31 137.9 224 44.2
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 9.9e-31 137.9 223 41.7
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 9.9e-31 137.9 225 43.1
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 1.3e-30 137.5 255 39.6
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 1.3e-30 137.5 226 44.7
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.7e-30 137.1 224 44.2
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.7e-30 137.1 224 44.2
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 3.8e-30 136.0 254 39.8
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 3.8e-30 136.0 228 44.3
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 6.4e-30 135.2 237 40.5
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 6.4e-30 135.2 228 43.9
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 1.1e-29 134.4 225 45.8
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.4e-29 134.0 224 42.9
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 1.4e-29 134.0 238 42.0
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 4.2e-29 132.5 227 41.9
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 2.1e-28 130.2 233 43.3
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 2.1e-28 130.2 243 39.5
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 2.7e-28 129.8 232 43.1
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 2.7e-28 129.8 238 40.8
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 6.0e-28 128.6 235 38.7
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 6.0e-28 128.6 226 40.7
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 1.0e-27 127.9 219 41.6
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 1.8e-27 127.1 220 41.4
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 1.8e-27 127.1 228 40.8
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 5.1e-27 125.6 210 41.9
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 5.1e-27 125.6 230 39.6
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 6.7e-27 125.2 246 39.0
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 1.9e-26 123.6 240 41.7
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 1.9e-26 123.6 240 38.3
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.3e-26 122.9 224 40.6
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 5.6e-26 122.1 226 40.7
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 7.4e-26 121.7 227 39.2
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 2.8e-25 119.8 225 41.3
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 2.8e-25 119.8 228 38.6
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 4.8e-25 119.0 228 38.6
Migut.F00261 Erythranthe guttata HOM05D002932 ORTHO05D003208 8.1e-25 118.2 248 39.1
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 1.4e-24 117.5 225 37.8
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 5.3e-24 115.5 235 37.0
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 6.9e-24 115.2 220 40.5
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 6.9e-24 115.2 226 39.8
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 9.0e-24 114.8 238 37.8
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 2.0e-23 113.6 221 38.0
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 2.6e-23 113.2 223 37.7
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 9.9e-23 111.3 227 39.2
Sed0018025 Sechium edule HOM05D002932 ORTHO05D003208 9.9e-23 111.3 239 37.2
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 1.3e-22 110.9 223 37.2
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 2.9e-22 109.8 244 36.1
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 3.8e-22 109.4 219 39.7
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 6.4e-22 108.6 231 38.5
ClCG01G000790 Citrullus lanatus HOM05D002932 ORTHO05D003208 1.1e-21 107.8 229 36.7
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 2.5e-21 106.7 227 38.3
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 2.5e-21 106.7 224 37.5
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 7.1e-21 105.1 233 35.2
MELO3C005851.2 Cucumis melo HOM05D002932 ORTHO05D003208 9.3e-21 104.8 235 36.2
CsaV3_5G000930 Cucumis sativus L. HOM05D002932 ORTHO05D003208 2.1e-20 103.6 237 38.4
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 2.1e-20 103.6 224 36.6
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 7.9e-20 101.7 218 37.6
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 3.9e-19 99.4 218 37.2
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 3.9e-19 99.4 229 33.6
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 5.1e-19 99.0 230 37.0
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 5.1e-19 99.0 214 34.6
Medtr6g034050 Medicago truncatula HOM05D002932 ORTHO05D003208 1.1e-18 97.8 225 37.3
PGR142G0585 Punica granatum HOM05D002932 ORTHO05D003208 3.3e-18 96.3 227 39.2
Atru.ctg97_1.61 Acer truncatum HOM05D002932 ORTHO05D003208 4.3e-18 95.9 217 37.3
Sc19g0001040 Simmondsia chinensis HOM05D002932 ORTHO05D003208 7.4e-18 95.1 225 39.1
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.1e-16 91.3 153 41.8
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.1e-16 91.3 163 39.9
HanXRQChr07g0207101 Helianthus annuus HOM05D002932 ORTHO05D003208 5.3e-16 89.0 213 32.9
Gorai.007G013900 Gossypium raimondii HOM05D002932 ORTHO05D003208 9.0e-16 88.2 193 35.8
Nitab4.5_0009102g0020 Nicotiana tabacum HOM05D002932 ORTHO05D003208 1.7e-14 84.0 192 38.0
Peaxi162Scf00618g00627 Petunia axillaris HOM05D002932 ORTHO05D003208 3.8e-14 82.8 190 35.3
Peaxi162Scf00904g00468 Petunia axillaris HOM05D002932 ORTHO05D003208 4.9e-14 82.4 206 35.0
Lsat_1_v5_gn_2_133581 Lactuca sativa HOM05D002932 ORTHO05D003208 2.5e-13 80.1 187 35.8
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 3.2e-13 79.7 234 31.6
CAN.G204.10 Capsicum annuum HOM05D002932 ORTHO05D003208 7.1e-13 78.6 220 31.8
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 9.3e-13 78.2 249 29.7
Lsat_1_v5_gn_8_6240 Lactuca sativa HOM05D002932 ORTHO05D003208 9.3e-13 78.2 245 31.8
CSS0001843 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 6.0e-12 75.5 129 40.3
MBI07_g44813_MAGBIO Magnolia biondii HOM05D002932 ORTHO05D003208 7.9e-12 75.1 227 31.7
MSTRG.27064 Avicennia marina HOM05D002932 ORTHO05D003208 2.5e-10 70.1 148 35.8
PSO384G0628 Papaver somniferum HOM05D002932 ORTHO05D003208 1.3e-09 67.8 138 34.8
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 2.2e-09 67.0 222 27.5
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 2.8e-09 66.6 222 31.1
CSS0002659 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 3.7e-09 66.2 245 29.4
Dinv32532 Davidia involucrata HOM05D002932 ORTHO05D003208 3.7e-09 66.2 267 25.8
PSO135G1046 Papaver somniferum HOM05D002932 ORTHO05D003208 3.7e-09 66.2 253 26.5
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 3.7e-09 66.2 226 29.6
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 1.4e-08 64.3 219 31.5
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 1.8e-08 63.9 222 28.4
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 1.8e-08 63.9 219 31.1
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 2.4e-08 63.5 219 31.1
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 3.1e-08 63.2 220 28.2
MSTRG.4831 Avicennia marina HOM05D002932 ORTHO05D003208 5.3e-08 62.4 266 28.6
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 6.9e-08 62.0 269 26.8
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 6.9e-08 62.0 235 27.7
vmacro10092 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 6.9e-08 62.0 113 38.1
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 9.0e-08 61.6 220 27.7
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 9.0e-08 61.6 220 27.7
CSS0013096 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.5e-07 60.8 242 28.5
Peaxi162Scf00020g00174 Petunia axillaris HOM05D002932 ORTHO05D003208 1.5e-07 60.8 219 28.3
Duzib133G1077 Durio zibethinus HOM05D002932 ORTHO05D003208 2.0e-07 60.5 231 28.6
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 2.0e-07 60.5 236 30.9
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 3.4e-07 59.7 252 26.2
Aqoxy1G02826 Aquilegia oxysepala HOM05D002932 ORTHO05D003208 5.9e-07 58.9 240 29.6
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 5.9e-07 58.9 288 26.0
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 1.3e-06 57.8 221 29.4
CsaV3_3G008520 Cucumis sativus L. HOM05D002932 ORTHO05D003208 2.9e-06 56.6 217 30.4
Sopen06g012200 Solanum pennellii HOM05D002932 ORTHO05D003208 3.8e-06 56.2 193 27.5
HanXRQChr16g0523761 Helianthus annuus HOM05D002932 ORTHO05D003208 5.0e-06 55.8 230 30.9
DCAR_006952 Daucus carota HOM05D002932 ORTHO05D003208 6.5e-06 55.5 236 27.1
PGSC0003DMG400028894 Solanum tuberosum HOM05D002932 ORTHO05D003208 6.5e-06 55.5 206 29.1
COL.COLO4_06371 Corchorus olitorius HOM05D002932 ORTHO05D003208 8.5e-06 55.1 172 29.7
Thecc.01G350800 Theobroma cacao HOM05D002932 ORTHO05D003208 8.5e-06 55.1 156 30.1


User provided reference genes

Program Settings