Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06200 Brassica carinata HOM05D014449 ORTHO05D015517 8.9e-56 219.9 104 100.0
BolC7t43594H Brassica oleracea HOM05D014449 ORTHO05D015517 3.2e-53 211.5 106 95.3
C06p47410 Brassica napus HOM05D014449 ORTHO05D015517 9.3e-53 209.9 106 95.3
C05p31820 Brassica napus HOM05D014449 ORTHO05D015517 3.5e-52 208.0 106 94.3
BolC1t00382H Brassica oleracea HOM05D014449 ORTHO05D015517 4.6e-52 207.6 106 93.4
BcaC03g16995 Brassica carinata HOM05D014449 ORTHO05D015517 2.6e-39 165.2 79 93.7
BcaC01g04324 Brassica carinata HOM05D014449 ORTHO05D015517 1.2e-36 156.4 104 76.9
BolC4t22435H Brassica oleracea HOM05D014449 ORTHO05D015517 1.9e-34 149.1 96 79.2
BcaB07g31859 Brassica carinata HOM05D000819 ORTHO05D000661 5.1e-19 97.8 53 84.9
BcaC05g25746 Brassica carinata HOM05D000819 ORTHO05D000661 1.5e-18 96.3 53 86.8
A06p14530 Brassica napus HOM05D000819 ORTHO05D000661 1.5e-18 96.3 53 86.8
C05p16760 Brassica napus HOM05D000819 ORTHO05D000661 1.5e-18 96.3 53 86.8
BolC5t30377H Brassica oleracea HOM05D000819 ORTHO05D000661 1.5e-18 96.3 53 86.8
BraA06t24579Z Brassica rapa HOM05D000819 ORTHO05D000661 1.5e-18 96.3 53 86.8
Thhalv10008420m.g Eutrema salsugineum HOM05D000819 ORTHO05D000661 1.6e-17 92.8 53 83.0
Carub.0001s1812 Capsella rubella HOM05D000819 ORTHO05D000661 2.8e-17 92.0 53 83.0
Sp1g16440 Schrenkiella parvula HOM05D000819 ORTHO05D000661 3.1e-16 88.6 53 83.0
AL1G30930 Arabidopsis lyrata HOM05D000819 ORTHO05D000661 4.1e-16 88.2 53 79.2
AT1G18490 Arabidopsis thaliana HOM05D000819 ORTHO05D000661 4.1e-16 88.2 53 79.2
CARHR019110 Cardamine hirsuta HOM05D000819 ORTHO05D000661 2.0e-15 85.9 53 77.4
BcaC02g12062 Brassica carinata HOM05D014449 ORTHO05D015517 4.5e-15 84.7 80 62.5
Dinv38614 Davidia involucrata HOM05D000819 ORTHO05D000661 2.9e-14 82.0 53 66.0
THA.LOC104812123 Tarenaya hassleriana HOM05D000819 ORTHO05D000661 1.4e-13 79.7 53 66.0
vmacro17650 Vaccinium macrocarpon HOM05D000819 ORTHO05D000661 2.5e-13 79.0 64 53.1
Aa31LG7G3180 Aethionema arabicum HOM05D000819 ORTHO05D000661 3.2e-13 78.6 53 73.6
Dinv36854 Davidia involucrata HOM05D000819 ORTHO05D000661 3.2e-13 78.6 53 64.2
VMungo1309G0507 Vigna mungo HOM05D000819 ORTHO05D000661 1.6e-12 76.3 53 62.3
VMungo1309G0805 Vigna mungo HOM05D000819 ORTHO05D000661 2.1e-12 75.9 52 63.5
Atru.chr9.667 Acer truncatum HOM05D000819 ORTHO05D000661 2.7e-12 75.5 53 62.3
CiPaw.16G081800 Carya illinoinensis HOM05D000819 ORTHO05D000661 2.7e-12 75.5 53 58.5
Lj1g0024516 Lotus japonicus HOM05D000819 ORTHO05D000661 2.7e-12 75.5 53 62.3
Rhsim11G0054200 Rhododendron simsii HOM05D000819 ORTHO05D000661 2.7e-12 75.5 53 58.5
C04p08340 Brassica napus HOM05D014449 ORTHO05D015517 3.6e-12 75.1 36 91.7
PSO063G5316 Papaver somniferum HOM05D000819 ORTHO05D000661 3.6e-12 75.1 53 62.3
QL10p022014 Quercus lobata HOM05D000819 ORTHO05D000661 3.6e-12 75.1 53 56.6
Hund02538 Selenicereus undatus HOM05D000819 ORTHO05D000661 3.6e-12 75.1 53 60.4
Glyma.04G156900 Glycine max HOM05D000819 ORTHO05D000661 4.6e-12 74.7 53 58.5
Glyma.15G207700 Glycine max HOM05D000819 ORTHO05D000661 4.6e-12 74.7 53 58.5
Phvul.009G191000 Phaseolus vulgaris HOM05D000819 ORTHO05D000661 4.6e-12 74.7 53 60.4
Cfa019862 Carpinus fangiana HOM05D000819 ORTHO05D000661 6.1e-12 74.3 53 60.4
Haze_18556 Corylus avellana HOM05D000819 ORTHO05D000661 6.1e-12 74.3 53 60.4
Glyma.06G208100 Glycine max HOM05D000819 ORTHO05D000661 6.1e-12 74.3 53 60.4
Lalb_Chr08g0235221 Lupinus albus HOM05D000819 ORTHO05D000661 6.1e-12 74.3 53 60.4
Aqoxy3G03814 Aquilegia oxysepala HOM05D000819 ORTHO05D000661 1.0e-11 73.6 53 60.4
Prupe.5G212700 Prunus persica HOM05D000819 ORTHO05D000661 1.0e-11 73.6 53 60.4
AUR62008427 Chenopodium quinoa HOM05D000819 ORTHO05D000661 1.8e-11 72.8 65 55.4
TAR629G0207 Trochodendron aralioides HOM05D000819 ORTHO05D000661 1.8e-11 72.8 53 60.4
CANSAT80G0579 Cannabis sativa HOM05D000819 ORTHO05D000661 2.3e-11 72.4 53 56.6
CSS0019389 Camellia sinensis var. sinensis HOM05D000819 ORTHO05D000661 3.0e-11 72.0 53 56.6
CSS0045226 Camellia sinensis var. sinensis HOM05D000819 ORTHO05D000661 3.0e-11 72.0 53 56.6
arahy.Tifrunner.gnm1.ann1.Y9A69F Arachis hypogaea HOM05D000819 ORTHO05D000661 3.9e-11 71.6 53 56.6
Medtr2g055320 Medicago truncatula HOM05D000819 ORTHO05D000661 3.9e-11 71.6 53 60.4
Medtr2g058330 Medicago truncatula HOM05D000819 ORTHO05D000661 3.9e-11 71.6 53 60.4
arahy.Tifrunner.gnm1.ann1.VNY0QE Arachis hypogaea HOM05D000819 ORTHO05D000661 5.1e-11 71.2 53 56.6
Duzib205G1963 Durio zibethinus HOM05D000819 ORTHO05D000661 5.1e-11 71.2 53 62.3
PSO782G0001 Papaver somniferum HOM05D000819 ORTHO05D000661 5.1e-11 71.2 53 60.4
PGR083G0703 Punica granatum HOM05D000819 ORTHO05D000661 5.1e-11 71.2 53 56.6
Ca_02685_v3 Cicer arietinum L. HOM05D000819 ORTHO05D000661 6.7e-11 70.9 53 58.5
CsaV3_1G003120 Cucumis sativus L. HOM05D000819 ORTHO05D000661 6.7e-11 70.9 53 56.6
Psat1g028080 Pisum sativum HOM05D000819 ORTHO05D000661 6.7e-11 70.9 53 58.5
MELO3C017267.2 Cucumis melo HOM05D000819 ORTHO05D000661 8.8e-11 70.5 53 56.6
Gohir.A11G034700 Gossypium hirsutum HOM05D000819 ORTHO05D000661 8.8e-11 70.5 53 62.3
Gorai.007G040900 Gossypium raimondii HOM05D000819 ORTHO05D000661 8.8e-11 70.5 53 62.3
Manes.05G116200 Manihot esculenta HOM05D000819 ORTHO05D000661 8.8e-11 70.5 53 56.6
Ciclev10021506m.g Citrus clementina HOM05D000819 ORTHO05D000661 1.1e-10 70.1 53 58.5
Gohir.D11G038200 Gossypium hirsutum HOM05D000819 ORTHO05D000661 1.1e-10 70.1 53 62.3
Eucgr.B00664 Eucalyptus grandis HOM05D000819 ORTHO05D000661 1.5e-10 69.7 53 54.7
Thecc.03G113400 Theobroma cacao HOM05D000819 ORTHO05D000661 1.5e-10 69.7 53 60.4
Ah.02g113610 Amaranthus hybridus HOM05D000715 ORTHO05D000024 2.0e-10 69.3 55 54.5
Cpa.g.sc13.90 Carica papaya HOM05D000819 ORTHO05D000661 2.0e-10 69.3 67 49.3
ClCG06G015220 Citrullus lanatus HOM05D000819 ORTHO05D000661 2.0e-10 69.3 53 56.6
Lj9C434T19 Lonicera japonica HOM05D000819 ORTHO05D000661 2.0e-10 69.3 53 58.5
EL10Ac5g11031 Beta vulgaris HOM05D000819 ORTHO05D000661 2.5e-10 68.9 69 49.3
GSVIVG01008196001 Vitis vinifera HOM05D000819 ORTHO05D000661 2.5e-10 68.9 53 52.8
Duzib068G0976 Durio zibethinus HOM05D000819 ORTHO05D000661 3.3e-10 68.6 53 58.5
Cc04_g07850 Coffea canephora HOM05D000819 ORTHO05D000661 4.3e-10 68.2 53 56.6
MD14G1218600 Malus domestica HOM05D000819 ORTHO05D000661 4.3e-10 68.2 53 58.5
TPR.G39596 Trifolium pratense HOM05D000819 ORTHO05D000661 4.3e-10 68.2 54 55.6
Sed0016272 Sechium edule HOM05D000819 ORTHO05D000661 5.7e-10 67.8 53 54.7
FAN18G2242 Fragaria x ananassa HOM05D000819 ORTHO05D000661 7.4e-10 67.4 60 51.7
CDE04G1895 Ceratophyllum demersum HOM05D000819 ORTHO05D000661 9.7e-10 67.0 59 54.2
Nitab4.5_0000646g0140 Nicotiana tabacum HOM05D000819 ORTHO05D000661 9.7e-10 67.0 65 47.7
Potri.012G057400 Populus trichocarpa HOM05D000819 ORTHO05D000661 9.7e-10 67.0 53 56.6
Sabra15G0080800 Salix brachista HOM05D000819 ORTHO05D000661 9.7e-10 67.0 53 50.9
Solyc03g114510.4 Solanum lycopersicum HOM05D000819 ORTHO05D000661 9.7e-10 67.0 53 54.7
Sopen03g033600 Solanum pennellii HOM05D000819 ORTHO05D000661 9.7e-10 67.0 53 54.7
CAN.G982.13 Capsicum annuum HOM05D000819 ORTHO05D000661 1.3e-09 66.6 53 56.6
AUR62021668 Chenopodium quinoa HOM05D000819 ORTHO05D000661 1.3e-09 66.6 53 58.5
Migut.D01485 Erythranthe guttata HOM05D000819 ORTHO05D000661 1.3e-09 66.6 53 54.7
Peaxi162Scf00017g03133 Petunia axillaris HOM05D000819 ORTHO05D000661 1.7e-09 66.2 53 54.7
DCAR_023149 Daucus carota HOM05D000819 ORTHO05D000661 2.2e-09 65.9 53 49.1
Actinidia16064 Actinidia chinensis HOM05D000819 ORTHO05D000661 2.8e-09 65.5 53 54.7
MSTRG.4501 Avicennia marina HOM05D000819 ORTHO05D000661 2.8e-09 65.5 53 54.7
Potri.015G055600 Populus trichocarpa HOM05D000819 ORTHO05D000661 2.8e-09 65.5 53 49.1
Sc04g0004060 Simmondsia chinensis HOM05D000819 ORTHO05D000661 2.8e-09 65.5 53 54.7
MBI14_g23870_MAGBIO Magnolia biondii HOM05D000819 ORTHO05D000661 3.7e-09 65.1 59 50.8
PGSC0003DMG400024609 Solanum tuberosum HOM05D000819 ORTHO05D000661 3.7e-09 65.1 53 54.7
SHI18987 Sapria himalayana HOM05D000819 ORTHO05D015517 4.8e-09 64.7 54 51.9
TWI81G1087 Tripterygium wilfordii HOM05D000819 ORTHO05D000661 6.3e-09 64.3 53 52.8
Nitab4.5_0004342g0100 Nicotiana tabacum HOM05D000819 ORTHO05D000661 8.2e-09 63.9 52 53.8
ATR0691G258 Amborella trichopoda HOM05D000819 ORTHO05D000661 1.1e-08 63.5 65 44.6
FvH4_5g13010 Fragaria vesca HOM05D000819 ORTHO05D000661 1.1e-08 63.5 65 46.2
FAN13G0624 Fragaria x ananassa HOM05D000819 ORTHO05D000661 1.1e-08 63.5 65 46.2
MBI14_g38784_MAGBIO Magnolia biondii HOM05D000819 ORTHO05D000661 1.8e-08 62.8 59 49.2
Manes.01G023300 Manihot esculenta HOM05D000819 ORTHO05D000661 2.4e-08 62.4 53 49.1
Nn3g17621 Nelumbo nucifera HOM05D000819 ORTHO05D000661 4.1e-08 61.6 53 49.1
MD06G1208200 Malus domestica HOM05D000819 ORTHO05D000661 6.9e-08 60.8 53 54.7
Oeu031814.1 Olea europaea HOM05D000819 ORTHO05D000661 1.2e-07 60.1 53 45.3
HPP92_021644 Vanilla planifolia HOM05D000819 ORTHO05D000661 3.4e-07 58.5 57 50.9
Lsat_1_v5_gn_5_24060 Lactuca sativa HOM05D000819 ORTHO05D000661 4.5e-07 58.2 53 47.2
unitig_578.g15940 Utricularia gibba HOM05D000819 ORTHO05D015517 4.5e-07 58.2 51 47.1
ECA246G5019 Erigeron canadensis HOM05D000819 ORTHO05D000661 5.9e-07 57.8 53 50.9
SEGI_36656 Sequoiadendron giganteum HOM05D000819 ORTHO05D000661 5.9e-07 57.8 62 45.2
HanXRQChr05g0157791 Helianthus annuus HOM05D000819 ORTHO05D000661 1.0e-06 57.0 53 49.1
Os08g0133000 Oryza sativa ssp. japonica HOM05D000819 ORTHO05D000661 1.7e-06 56.2 57 45.6
Os08g0133700 Oryza sativa ssp. japonica HOM05D000819 ORTHO05D000661 1.7e-06 56.2 57 45.6
RcHm_v2.0_Chr7g0184171 Rosa chinensis HOM05D000819 ORTHO05D000661 1.7e-06 56.2 65 44.6


User provided reference genes

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