Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 7.9e-46 186.8 98 100.0
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 7.9e-46 186.8 98 100.0
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 7.9e-46 186.8 98 100.0
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 1.1e-44 183.0 98 98.0
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 5.7e-44 180.6 98 94.9
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 2.4e-42 175.3 98 94.9
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.0e-40 169.9 98 89.8
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 1.5e-36 156.0 98 81.6
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 4.8e-35 151.0 73 98.6
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 1.8e-34 149.1 98 80.6
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 1.8e-34 149.1 98 80.6
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 6.9e-34 147.1 98 80.6
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 3.4e-33 144.8 78 87.2
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 7.7e-33 143.7 99 78.8
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 3.8e-32 141.4 96 78.1
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.0e-32 141.0 98 74.5
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 2.0e-28 129.0 95 72.6
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 1.3e-27 126.3 70 84.3
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 7.2e-23 110.5 89 56.2
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 1.6e-22 109.4 81 64.2
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 1.3e-19 99.8 93 54.8
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 3.5e-17 91.7 85 50.6
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 3.5e-17 91.7 90 51.1
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 4.5e-17 91.3 96 47.9
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 4.5e-17 91.3 93 49.5
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.7e-17 90.5 98 48.0
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.7e-17 90.5 98 48.0
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 7.7e-17 90.5 98 48.0
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 7.7e-17 90.5 88 48.9
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 1.0e-16 90.1 93 49.5
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 1.3e-16 89.7 89 46.1
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.3e-16 89.7 92 46.7
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 1.7e-16 89.4 63 60.3
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.2e-16 89.0 96 47.9
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 2.2e-16 89.0 92 45.7
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 2.2e-16 89.0 79 54.4
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 3.8e-16 88.2 87 49.4
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 5.0e-16 87.8 96 42.7
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 5.0e-16 87.8 89 44.9
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 6.5e-16 87.4 92 47.8
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 6.5e-16 87.4 93 45.2
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 8.5e-16 87.0 99 47.5
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 8.5e-16 87.0 93 48.4
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 8.5e-16 87.0 62 59.7
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.1e-15 86.7 62 58.1
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 1.5e-15 86.3 90 47.8
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 1.9e-15 85.9 95 45.3
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.9e-15 85.9 91 47.3
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 2.5e-15 85.5 93 48.4
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 3.2e-15 85.1 94 50.0
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 3.2e-15 85.1 96 44.8
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 4.2e-15 84.7 84 45.2
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 4.2e-15 84.7 91 44.0
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 5.5e-15 84.3 95 46.3
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 5.5e-15 84.3 83 47.0
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 7.2e-15 84.0 96 42.7
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.2e-15 84.0 88 46.6
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.2e-15 84.0 88 46.6
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 7.2e-15 84.0 88 46.6
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 7.2e-15 84.0 94 40.4
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 9.4e-15 83.6 96 49.0
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 1.2e-14 83.2 96 40.6
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 1.2e-14 83.2 98 44.9
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 1.6e-14 82.8 83 48.2
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 2.1e-14 82.4 87 44.8
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 2.1e-14 82.4 99 45.5
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 2.1e-14 82.4 77 51.9
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 2.7e-14 82.0 82 51.2
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 2.7e-14 82.0 87 46.0
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 2.7e-14 82.0 83 48.2
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 3.6e-14 81.6 107 39.3
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 3.6e-14 81.6 92 46.7
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 4.7e-14 81.3 88 38.6
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 6.1e-14 80.9 89 46.1
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 6.1e-14 80.9 94 39.4
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 6.1e-14 80.9 80 46.2
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 6.1e-14 80.9 97 46.4
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 6.1e-14 80.9 92 43.5
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 8.0e-14 80.5 90 45.6
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.0e-13 80.1 98 48.0
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 1.0e-13 80.1 93 39.8
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 1.4e-13 79.7 95 41.1
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 2.3e-13 79.0 99 43.4
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.3e-13 79.0 64 51.6
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 2.3e-13 79.0 64 51.6
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 3.0e-13 78.6 95 45.3
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 6.8e-13 77.4 96 42.7
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 6.8e-13 77.4 76 51.3
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 6.8e-13 77.4 98 41.8
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 8.8e-13 77.0 81 43.2
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 8.8e-13 77.0 90 46.7
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 8.8e-13 77.0 89 40.4
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.2e-12 76.6 77 46.8
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 1.5e-12 76.3 99 39.4
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 1.5e-12 76.3 65 52.3
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.5e-12 76.3 91 47.3
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 98 42.9
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 2.0e-12 75.9 90 43.3
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 2.0e-12 75.9 88 42.0
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 2.0e-12 75.9 103 42.7
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 2.0e-12 75.9 64 46.9
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.0e-12 75.9 94 41.5
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 2.6e-12 75.5 87 44.8
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 2.6e-12 75.5 98 41.8
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 3.4e-12 75.1 87 43.7
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 4.4e-12 74.7 86 43.0
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 4.4e-12 74.7 93 43.0
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.2e-11 72.4 94 37.2
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 4.8e-11 71.2 52 55.8
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.1e-10 70.1 82 37.8
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 2.4e-10 68.9 85 42.4
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 7.0e-10 67.4 90 36.7
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 7.0e-10 67.4 86 34.9
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.2e-09 66.6 90 36.7
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 2.0e-09 65.9 78 38.5
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 2.0e-09 65.9 66 40.9
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 4.5e-09 64.7 91 37.4
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 4.5e-09 64.7 96 38.5
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 5.9e-09 64.3 87 33.3
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 5.9e-09 64.3 88 37.5
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 5.9e-09 64.3 85 38.8
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 7.7e-09 63.9 90 32.2
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 1.0e-08 63.5 83 36.1
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 1.0e-08 63.5 83 36.1
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.3e-08 63.2 83 36.1
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.3e-08 63.2 83 36.1
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.7e-08 62.8 87 29.9
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 1.7e-08 62.8 95 38.9
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.7e-08 62.8 90 35.6
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.9e-08 62.0 90 34.4
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 3.8e-08 61.6 87 33.3
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 3.8e-08 61.6 65 47.7
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.1e-07 60.1 85 35.3
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 7.2e-07 57.4 94 40.4
Os09g0525500 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 1.6e-06 56.2 88 34.1
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 2.1e-06 55.8 62 41.9
Zm00001eb319020 Zea mays HOM05D005649 ORTHO05D006837 8.0e-06 53.9 66 40.9


User provided reference genes

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