Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-156 556.6 293 100.0
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 3.9e-149 531.6 286 97.6
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 3.7e-131 471.9 256 97.7
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 4.8e-131 471.5 256 97.3
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 4.8e-131 471.5 256 97.3
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 5.9e-121 438.0 300 82.3
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 9.7e-116 420.6 300 77.7
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.2e-97 360.5 310 67.1
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.7e-75 287.0 272 55.5
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 6.6e-72 275.0 291 53.3
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 3.3e-71 272.7 258 65.1
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.2e-70 270.8 285 49.5
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-68 263.8 157 80.9
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 2.6e-68 263.1 289 49.8
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 3.4e-68 262.7 300 54.7
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.3e-67 260.8 176 67.0
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.3e-67 260.8 176 67.0
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 2.2e-67 260.0 291 47.8
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 1.9e-66 256.9 180 65.0
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 3.5e-65 252.7 290 46.6
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.7e-64 250.4 171 66.7
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.9e-64 249.2 321 44.2
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 6.6e-64 248.4 309 48.2
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-63 247.3 289 47.1
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-63 247.3 289 47.1
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 2.5e-63 246.5 219 61.6
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 2.5e-63 246.5 219 61.6
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 7.1e-58 228.4 176 60.8
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 9.2e-58 228.0 295 42.0
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 9.2e-58 228.0 291 44.7
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 3.5e-57 226.1 293 47.1
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 6.6e-56 221.9 291 49.1
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.1e-55 221.1 292 49.3
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 4.3e-55 219.2 299 43.1
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 3.6e-54 216.1 293 40.6
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.3e-51 207.6 175 56.0
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 2.3e-48 196.8 334 34.1
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.5e-47 193.4 223 46.6
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 3.3e-47 193.0 328 34.5
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 5.6e-47 192.2 356 33.4
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 5.6e-47 192.2 356 33.4
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 9.0e-45 184.9 177 46.3
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 4.5e-44 182.6 190 47.4
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 4.5e-44 182.6 356 32.9
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 7.6e-44 181.8 170 47.6
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 1.3e-43 181.0 175 46.9
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 2.2e-43 180.3 191 45.0
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 2.2e-43 180.3 189 43.4
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 2.9e-43 179.9 175 46.9
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 8.4e-43 178.3 332 32.2
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.4e-42 177.6 193 45.1
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 2.4e-42 176.8 337 32.3
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 7.1e-42 175.3 185 47.0
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 7.1e-42 175.3 187 43.3
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.1e-42 175.3 173 46.8
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 9.3e-42 174.9 180 46.1
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.2e-41 174.5 327 31.2
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 1.6e-41 174.1 195 43.1
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 2.1e-41 173.7 349 31.2
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 2.7e-41 173.3 356 30.6
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 3.5e-41 172.9 173 44.5
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 3.5e-41 172.9 335 30.7
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 4.6e-41 172.6 193 44.6
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 6.0e-41 172.2 169 47.3
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 1.0e-40 171.4 175 44.6
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.8e-40 170.6 189 43.4
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 1.8e-40 170.6 318 31.1
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 3.0e-40 169.9 192 42.7
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 3.9e-40 169.5 174 46.0
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 5.1e-40 169.1 172 42.4
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 6.7e-40 168.7 187 44.9
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 1.1e-39 167.9 177 41.8
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 1.5e-39 167.5 202 42.1
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 1.5e-39 167.5 173 43.9
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 1.5e-39 167.5 166 46.4
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 2.5e-39 166.8 334 31.1
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 3.3e-39 166.4 190 42.6
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 3.3e-39 166.4 340 32.9
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.3e-39 166.0 267 46.1
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 4.3e-39 166.0 360 30.3
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 2.1e-38 163.7 323 33.1
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 2.8e-38 163.3 189 44.4
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.8e-38 162.5 323 33.4
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 4.8e-38 162.5 201 39.8
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 6.2e-38 162.2 191 41.9
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 8.1e-38 161.8 172 43.6
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 1.4e-37 161.0 316 30.1
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 1.8e-37 160.6 318 29.6
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.8e-37 160.6 191 43.5
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.8e-37 160.6 187 40.1
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 2.4e-37 160.2 172 43.0
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 3.1e-37 159.8 172 42.4
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 3.1e-37 159.8 191 39.8
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.0e-37 159.5 194 43.8
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 4.0e-37 159.5 323 31.9
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 9.0e-37 158.3 187 43.3
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 1.2e-36 157.9 191 38.2
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.2e-36 157.9 175 43.4
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.0e-36 157.1 176 43.8
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 2.0e-36 157.1 193 43.0
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 2.6e-36 156.8 176 43.2
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 2.6e-36 156.8 189 41.8
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 3.4e-36 156.4 223 36.3
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 4.5e-36 156.0 191 40.3
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 1.0e-35 154.8 191 41.4
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.0e-35 154.8 171 40.9
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 1.3e-35 154.5 200 38.5
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-35 154.5 189 41.3
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 1.7e-35 154.1 180 43.3
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.7e-35 154.1 212 39.6
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 2.9e-35 153.3 169 42.6
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.8e-35 152.9 205 41.0
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 4.9e-35 152.5 187 42.8
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.1e-34 151.4 172 40.7
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 2.5e-34 150.2 190 39.5
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 2.5e-34 150.2 180 42.2
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 3.2e-34 149.8 187 40.6
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 3.2e-34 149.8 203 38.4
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 5.5e-34 149.1 285 34.0
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.7e-33 146.7 171 42.7
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 3.5e-33 146.4 176 36.4
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 3.5e-33 146.4 189 39.7
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 7.9e-33 145.2 175 42.3
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 1.0e-32 144.8 173 38.2
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.0e-32 144.8 173 37.6
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 1.5e-31 141.0 179 44.1
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 1.5e-31 141.0 197 39.6
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 1.9e-31 140.6 144 43.8
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.9e-31 140.6 259 31.7
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 3.3e-31 139.8 247 32.4
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 8.2e-30 135.2 178 40.4
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 6.9e-29 132.1 194 37.1
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 9.0e-29 131.7 323 30.0
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.2e-28 131.3 252 30.6
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.5e-28 131.0 227 32.6
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 7.6e-28 128.6 245 30.2
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.0e-27 128.3 195 36.9
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.7e-27 127.5 177 36.2
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 4.2e-26 122.9 287 28.9
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 4.2e-26 122.9 148 39.2
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 4.6e-25 119.4 280 29.3
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.8e-24 117.5 96 51.0
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 4.3e-23 112.8 215 34.0
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 4.8e-22 109.4 184 31.5
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 1.4e-21 107.8 118 40.7
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.0e-20 104.0 88 52.3
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 2.0e-20 104.0 125 40.0
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 3.4e-20 103.2 231 27.3
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 4.5e-20 102.8 164 34.1
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 2.9e-19 100.1 169 33.1
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 3.8e-19 99.8 118 39.8
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 2.5e-18 97.1 144 36.1
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 5.5e-18 95.9 73 47.9
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 1.4e-16 91.3 117 36.8
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 2.5e-15 87.0 125 37.6
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 2.6e-12 77.0 117 34.2
BolC3t14251H Brassica oleracea HOM05D003860 ORTHO05D004218 7.7e-12 75.5 43 79.1
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 3.8e-11 73.2 207 24.6
Ca_00748_v3 Cicer arietinum L. HOM05D001580 ORTHO05D001517 1.2e-09 68.2 168 31.0
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 3.6e-09 66.6 132 28.0
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.0e-08 65.1 89 34.8
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 3.0e-08 63.5 171 28.7
Sopen11g001510 Solanum pennellii HOM05D001580 ORTHO05D001517 3.9e-08 63.2 179 31.3
Solyc11g005525.1 Solanum lycopersicum HOM05D001580 ORTHO05D001517 6.7e-08 62.4 179 31.3
CiPaw.10G080100 Carya illinoinensis HOM05D001580 ORTHO05D001517 2.0e-07 60.8 173 27.7
Carub.0008s1597 Capsella rubella HOM05D001580 ORTHO05D001517 7.4e-07 58.9 157 28.0
QL08p004822 Quercus lobata HOM05D001580 ORTHO05D001517 1.3e-06 58.2 161 29.8
VMungo0540G2270 Vigna mungo HOM05D001580 ORTHO05D001517 2.2e-06 57.4 161 29.2
Lj6g0007351 Lotus japonicus HOM05D001580 ORTHO05D001517 2.8e-06 57.0 167 28.1
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 4.8e-06 56.2 37 56.8
Manes.15G061700 Manihot esculenta HOM05D001580 ORTHO05D001517 8.2e-06 55.5 176 26.7
Sc07g0009290 Simmondsia chinensis HOM05D003141 ORTHO05D003633 8.2e-06 55.5 194 25.3


User provided reference genes

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