Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06154 Brassica carinata HOM05D007568 ORTHO05D009779 1.4e-147 526.2 247 100.0
BolC3t14260H Brassica oleracea HOM05D007568 ORTHO05D009779 3.4e-138 495.0 240 97.1
C03p18690 Brassica napus HOM05D007568 ORTHO05D009779 1.4e-136 489.6 240 95.8
BolC9t55448H Brassica oleracea HOM05D007568 ORTHO05D009779 3.5e-135 485.0 240 95.0
C09p27130 Brassica napus HOM05D007568 ORTHO05D009779 4.6e-135 484.6 240 94.6
A02p32020 Brassica napus HOM05D007568 ORTHO05D009779 2.5e-128 462.2 240 90.8
BraA02t08213Z Brassica rapa HOM05D007568 ORTHO05D009779 2.5e-128 462.2 240 90.8
BcaC02g08832 Brassica carinata HOM05D007568 ORTHO05D009779 5.3e-99 364.8 245 74.3
BcaNung01428 Brassica carinata HOM05D007568 ORTHO05D009779 7.0e-75 284.6 187 75.4
BcaB02g11011 Brassica carinata HOM05D007568 ORTHO05D009779 2.3e-73 279.6 224 60.3
A05p27540 Brassica napus HOM05D007568 ORTHO05D009779 8.1e-55 218.0 225 46.7
C02p26050 Brassica napus HOM05D007568 ORTHO05D009779 6.8e-54 214.9 225 45.8
C02p26010 Brassica napus HOM05D007568 ORTHO05D009779 8.9e-54 214.5 205 51.2
A03p66230 Brassica napus HOM05D007568 ORTHO05D009779 2.6e-53 213.0 243 44.9
BolC4t25354H Brassica oleracea HOM05D007568 ORTHO05D009779 2.6e-53 213.0 225 45.8
A08p24970 Brassica napus HOM05D007568 ORTHO05D009779 3.4e-53 212.6 243 45.7
BcaB07g31875 Brassica carinata HOM05D007568 ORTHO05D009779 1.0e-49 201.1 232 41.8
BraA09t40709Z Brassica rapa HOM05D007568 ORTHO05D009779 1.7e-49 200.3 233 43.8
BcaC01g01043 Brassica carinata HOM05D007568 ORTHO05D009779 3.9e-49 199.1 229 46.3
BcaB05g25263 Brassica carinata HOM05D007568 ORTHO05D009779 1.1e-48 197.6 232 42.2
BraA03t15678Z Brassica rapa HOM05D007568 ORTHO05D009779 9.9e-45 184.5 181 49.7
BcaB04g18340 Brassica carinata HOM05D007568 ORTHO05D009779 2.2e-44 183.3 224 41.5
C01p17360 Brassica napus HOM05D007568 ORTHO05D009779 8.4e-44 181.4 232 38.4
C03p86040 Brassica napus HOM05D007568 ORTHO05D009779 1.6e-42 177.2 232 37.9
BcaB04g18026 Brassica carinata HOM05D007568 ORTHO05D009779 2.1e-42 176.8 183 47.5
BolC4t26648H Brassica oleracea HOM05D007568 ORTHO05D009779 3.5e-42 176.0 170 49.4
C07p00760 Brassica napus HOM05D007568 ORTHO05D009779 1.0e-41 174.5 243 38.3
BolC4t24150H Brassica oleracea HOM05D000353 ORTHO05D000174 3.4e-37 159.5 144 52.8
BcaB08g34629 Brassica carinata HOM05D007568 ORTHO05D009779 3.8e-36 156.0 247 37.7
BcaC05g26582 Brassica carinata HOM05D007568 ORTHO05D009779 3.0e-33 146.4 173 43.4
A07p36520 Brassica napus HOM05D007568 ORTHO05D009779 3.9e-33 146.0 216 37.0
BcaB05g24631 Brassica carinata HOM05D007568 ORTHO05D009779 5.6e-32 142.1 169 41.4
BcaB04g20792 Brassica carinata HOM05D007568 ORTHO05D009779 6.9e-30 135.2 233 34.3
C04p50500 Brassica napus HOM05D007568 ORTHO05D009779 5.8e-29 132.1 172 40.1
BolC8t47055H Brassica oleracea HOM05D007568 ORTHO05D009779 7.1e-27 125.2 60 96.7
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 2.1e-26 123.6 110 54.5
C09p36930 Brassica napus HOM05D007568 ORTHO05D009779 1.3e-25 120.9 173 36.4
BolC9t56523H Brassica oleracea HOM05D007568 ORTHO05D009779 1.3e-25 120.9 173 36.4
BolC7t45261H Brassica oleracea HOM05D007568 ORTHO05D009779 9.6e-24 114.8 173 34.1
C03p18140 Brassica napus HOM05D007568 ORTHO05D009779 1.6e-23 114.0 147 38.1
BcaC09g50463 Brassica carinata HOM05D007568 ORTHO05D009779 8.1e-23 111.7 173 33.5
C01p25160 Brassica napus HOM05D030822 ORTHO05D009779 8.1e-23 111.7 159 34.6
Sp6g07340 Schrenkiella parvula HOM05D000353 ORTHO05D000174 2.4e-22 110.2 229 29.7
BolC1t05940H Brassica oleracea HOM05D007568 ORTHO05D027567 3.1e-22 109.8 84 61.9
A09p28960 Brassica napus HOM05D007568 ORTHO05D009779 4.0e-22 109.4 142 42.3
BraA09t38460Z Brassica rapa HOM05D007568 ORTHO05D009779 4.0e-22 109.4 142 42.3
C04p26530 Brassica napus HOM05D000353 ORTHO05D000174 9.0e-22 108.2 144 41.0
BcaC01g00913 Brassica carinata HOM05D007568 ORTHO05D009779 1.5e-21 107.5 155 36.8
BolC4t23333H Brassica oleracea HOM05D007568 ORTHO05D009779 3.4e-21 106.3 143 40.6
BraA03t15576Z Brassica rapa HOM05D007568 ORTHO05D009779 2.9e-20 103.2 65 67.7
A04p34410 Brassica napus HOM05D007568 ORTHO05D009779 1.1e-19 101.3 135 35.6
AL5G12730 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.4e-19 100.9 220 26.8
AL9U11480 Arabidopsis lyrata HOM05D000353 ORTHO05D011313 1.4e-19 100.9 230 27.0
BcaC09g50027 Brassica carinata HOM05D007568 ORTHO05D009779 4.2e-19 99.4 113 46.0
BolC8t51027H Brassica oleracea HOM05D007568 ORTHO05D009779 4.2e-19 99.4 239 29.3
C03p85880 Brassica napus HOM05D007568 ORTHO05D009779 4.6e-18 95.9 151 37.1
C04p16590 Brassica napus HOM05D030822 ORTHO05D009779 6.0e-18 95.5 143 33.6
A03p66080 Brassica napus HOM05D007568 ORTHO05D009779 1.3e-17 94.4 107 45.8
A05p17030 Brassica napus HOM05D007568 ORTHO05D009779 1.3e-17 94.4 107 45.8
C04p22790 Brassica napus HOM05D007568 ORTHO05D027567 1.8e-17 94.0 83 55.4
A01p06890 Brassica napus HOM05D007568 ORTHO05D009779 3.9e-17 92.8 107 44.9
BcaC09g47669 Brassica carinata HOM05D007568 ORTHO05D027567 1.1e-16 91.3 167 35.3
BolC4t23434H Brassica oleracea HOM05D007568 ORTHO05D009779 1.1e-16 91.3 65 63.1
Thhalv10027364m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 1.9e-16 90.5 252 27.8
AT1G52950 Arabidopsis thaliana HOM05D000353 ORTHO05D000174 3.3e-16 89.7 241 23.7
C05p49080 Brassica napus HOM05D000353 ORTHO05D000174 1.3e-15 87.8 245 28.2
Thhalv10000133m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 2.1e-15 87.0 246 26.8
BraA09t40707Z Brassica rapa HOM05D000353 ORTHO05D000174 6.3e-15 85.5 247 25.5
A03p66100 Brassica napus HOM05D000353 ORTHO05D000174 1.1e-14 84.7 247 25.5
BolC6t36043H Brassica oleracea HOM05D007568 ORTHO05D009779 1.1e-14 84.7 109 41.3
C01p31900 Brassica napus HOM05D000353 ORTHO05D000174 1.4e-14 84.3 239 25.5
Carub.0007s3602 Capsella rubella HOM05D000353 ORTHO05D000174 3.1e-14 83.2 234 25.6
BcaB03g16823 Brassica carinata HOM05D000353 ORTHO05D000174 4.1e-14 82.8 241 25.7
A07p20380 Brassica napus HOM05D007568 ORTHO05D009779 5.3e-14 82.4 104 43.3
AL2G19900 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 6.9e-14 82.0 230 26.1
AL2G22230 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 6.9e-14 82.0 230 26.1
AL6G41900 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 6.9e-14 82.0 230 26.1
AL7G11630 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 6.9e-14 82.0 231 26.8
C06p20120 Brassica napus HOM05D007568 ORTHO05D009779 1.2e-13 81.3 154 30.5
BolC2t09295H Brassica oleracea HOM05D007568 ORTHO05D009779 1.2e-13 81.3 92 43.5
AL4G20700 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 2.0e-13 80.5 230 26.1
BcaB08g34681 Brassica carinata HOM05D009963 ORTHO05D009779 2.0e-13 80.5 111 36.9
C08p32530 Brassica napus HOM05D000353 ORTHO05D000174 2.6e-13 80.1 243 24.3
Carub.0003s3392 Capsella rubella HOM05D000353 ORTHO05D000174 2.6e-13 80.1 232 22.8
AL2G19910 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 4.5e-13 79.3 235 22.1
BcaNung06627 Brassica carinata HOM05D007568 ORTHO05D009779 4.5e-13 79.3 73 50.7
BolC2t09294H Brassica oleracea HOM05D007568 ORTHO05D009779 4.5e-13 79.3 85 44.7
BolC2t10349H Brassica oleracea HOM05D007568 ORTHO05D009779 5.9e-13 79.0 91 45.1
AL5G12720 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 7.6e-13 78.6 235 22.1
AL6G41910 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 7.6e-13 78.6 235 22.1
BolC8t47824H Brassica oleracea HOM05D000353 ORTHO05D000174 1.0e-12 78.2 176 26.1
BraA02t07226Z Brassica rapa HOM05D000353 ORTHO05D000174 1.3e-12 77.8 236 22.9
Carub.0002s1156 Capsella rubella HOM05D011333 ORTHO05D011313 1.3e-12 77.8 251 24.3
AL2G22240 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 2.2e-12 77.0 235 22.1
A03p64530 Brassica napus HOM05D000353 ORTHO05D000174 2.9e-12 76.6 246 25.6
A10p31040 Brassica napus HOM05D000353 ORTHO05D000174 2.9e-12 76.6 243 24.3
Carub.0007s3603 Capsella rubella HOM05D000353 ORTHO05D011313 2.9e-12 76.6 238 23.5
C07p41190 Brassica napus HOM05D000353 ORTHO05D000174 5.0e-12 75.9 246 25.6
A01p26990 Brassica napus HOM05D000353 ORTHO05D000174 6.5e-12 75.5 241 24.9
BcaC01g02309 Brassica carinata HOM05D007568 ORTHO05D009779 8.4e-12 75.1 90 41.1
C04p16570 Brassica napus HOM05D000353 ORTHO05D000174 8.4e-12 75.1 243 24.3
C05p33950 Brassica napus HOM05D000353 ORTHO05D000174 8.4e-12 75.1 243 24.3
BolC2t08345H Brassica oleracea HOM05D000353 ORTHO05D000174 8.4e-12 75.1 243 24.3
BolC7t45258H Brassica oleracea HOM05D000353 ORTHO05D000174 8.4e-12 75.1 243 24.3
C03p86410 Brassica napus HOM05D000353 ORTHO05D000174 1.1e-11 74.7 242 26.0
AL9U11490 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 1.4e-11 74.3 235 21.7
BcaB06g28316 Brassica carinata HOM05D000353 ORTHO05D000174 1.4e-11 74.3 230 23.9
BcaC05g28066 Brassica carinata HOM05D000353 ORTHO05D000174 1.4e-11 74.3 247 23.9
C05p40800 Brassica napus HOM05D000353 ORTHO05D000174 1.4e-11 74.3 247 23.9
BcaB04g17762 Brassica carinata HOM05D000353 ORTHO05D000174 1.9e-11 73.9 232 23.3
AL3G51050 Arabidopsis lyrata HOM05D007965 ORTHO05D023618 2.5e-11 73.6 203 21.7
AL5G12680 Arabidopsis lyrata HOM05D007965 ORTHO05D023618 2.5e-11 73.6 203 21.7
AL8G17270 Arabidopsis lyrata HOM05D007965 ORTHO05D023618 2.5e-11 73.6 203 21.7
BraSC39t46217Z Brassica rapa HOM05D000353 ORTHO05D000174 2.5e-11 73.6 227 21.6
C04p31750 Brassica napus HOM05D000353 ORTHO05D000174 3.2e-11 73.2 242 26.0
BolC4t24724H Brassica oleracea HOM05D000353 ORTHO05D000174 3.2e-11 73.2 242 26.0
BcaC01g02319 Brassica carinata HOM05D007568 ORTHO05D009779 4.2e-11 72.8 134 33.6
C02p26060 Brassica napus HOM05D000353 ORTHO05D000174 4.2e-11 72.8 242 23.1
C07p13750 Brassica napus HOM05D000353 ORTHO05D000174 4.2e-11 72.8 234 26.5
A05p18670 Brassica napus HOM05D007568 ORTHO05D009779 5.5e-11 72.4 74 44.6
C05p39980 Brassica napus HOM05D000353 ORTHO05D000174 5.5e-11 72.4 242 24.8
AL1G50720 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 7.2e-11 72.0 204 26.0
C04p17840 Brassica napus HOM05D007568 ORTHO05D014500 7.2e-11 72.0 112 37.5
BolC5t34087H Brassica oleracea HOM05D007568 ORTHO05D009779 7.2e-11 72.0 64 50.0
C09p45610 Brassica napus HOM05D000353 ORTHO05D000174 9.3e-11 71.6 227 25.1
AL9U11500 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.6e-10 70.9 160 26.2
BraA03t15520Z Brassica rapa HOM05D000353 ORTHO05D000174 2.1e-10 70.5 182 28.0
Carub.0005s0849 Capsella rubella HOM05D007965 ORTHO05D023618 2.1e-10 70.5 196 25.5
AL2G19920 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.7e-10 70.1 160 26.2
AL2G22250 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 2.7e-10 70.1 160 26.2
BcaB06g27257 Brassica carinata HOM05D000353 ORTHO05D000174 2.7e-10 70.1 234 23.5
BcaC02g09404 Brassica carinata HOM05D007568 ORTHO05D009779 2.7e-10 70.1 61 52.5
A05p27520 Brassica napus HOM05D000353 ORTHO05D000174 2.7e-10 70.1 242 22.7
BcaB02g11540 Brassica carinata HOM05D011625 ORTHO05D013783 3.5e-10 69.7 149 28.9
BcaB05g23080 Brassica carinata HOM05D009963 ORTHO05D013780 3.5e-10 69.7 111 36.0
BcaC08g44287 Brassica carinata HOM05D000353 ORTHO05D015453 3.5e-10 69.7 137 27.0
AL5G12710 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 4.6e-10 69.3 160 25.6
A07p20350 Brassica napus HOM05D000353 ORTHO05D000174 4.6e-10 69.3 239 22.2
AL8G21940 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 6.1e-10 68.9 204 25.5
A03p30400 Brassica napus HOM05D000353 ORTHO05D000174 6.1e-10 68.9 239 22.2
BolC8t50650H Brassica oleracea HOM05D000353 ORTHO05D000174 6.1e-10 68.9 233 25.8
BolC3t16020H Brassica oleracea HOM05D000353 ORTHO05D000174 7.9e-10 68.6 239 20.5
BolC8t50060H Brassica oleracea HOM05D007568 ORTHO05D009779 7.9e-10 68.6 135 28.9
BcaC06g33059 Brassica carinata HOM05D000353 ORTHO05D000174 1.0e-09 68.2 233 25.8
A03p30410 Brassica napus HOM05D000353 ORTHO05D000174 1.0e-09 68.2 239 22.2
Carub.0001s3421 Capsella rubella HOM05D012762 ORTHO05D011313 1.0e-09 68.2 249 23.3
C09p42930 Brassica napus HOM05D000353 ORTHO05D000174 1.3e-09 67.8 175 26.9
BolC9t57163H Brassica oleracea HOM05D000353 ORTHO05D000174 1.3e-09 67.8 175 26.9
Carub.0001s3686 Capsella rubella HOM05D012762 ORTHO05D011313 1.3e-09 67.8 253 22.9
AL8G21920 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.8e-09 67.4 160 25.6
C01p49430 Brassica napus HOM05D007568 ORTHO05D009779 2.3e-09 67.0 97 35.1
BcaB07g30022 Brassica carinata HOM05D007568 ORTHO05D009779 3.0e-09 66.6 136 30.1
BcaC09g51435 Brassica carinata HOM05D000353 ORTHO05D000174 3.0e-09 66.6 239 22.2
BolC1t01288H Brassica oleracea HOM05D000353 ORTHO05D000174 3.0e-09 66.6 239 22.2
BcaC07g40033 Brassica carinata HOM05D000353 ORTHO05D000174 3.9e-09 66.2 202 22.8
C02p53420 Brassica napus HOM05D000353 ORTHO05D000174 3.9e-09 66.2 241 20.7
BcaB05g23783 Brassica carinata HOM05D000353 ORTHO05D000174 5.1e-09 65.9 238 20.6
Carub.0004s0702 Capsella rubella HOM05D000353 ORTHO05D000174 5.1e-09 65.9 237 23.2
Carub.0025s0005 Capsella rubella HOM05D000353 ORTHO05D021412 5.1e-09 65.9 149 24.8
Carub.0012s0011 Capsella rubella HOM05D000353 ORTHO05D000174 8.7e-09 65.1 224 25.0
BraA06t27230Z Brassica rapa HOM05D000353 ORTHO05D000174 1.1e-08 64.7 180 25.6
Carub.0016s0007 Capsella rubella HOM05D000353 ORTHO05D000174 1.5e-08 64.3 209 23.9
Carub.0076s0001 Capsella rubella HOM05D000353 ORTHO05D000174 1.5e-08 64.3 237 23.2
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.9e-08 63.9 200 22.5
AL7G11640 Arabidopsis lyrata HOM05D000353 ORTHO05D010269 1.9e-08 63.9 144 25.7
C02p33390 Brassica napus HOM05D000353 ORTHO05D015401 1.9e-08 63.9 241 22.0
C03p28750 Brassica napus HOM05D007568 ORTHO05D041881 2.5e-08 63.5 70 37.1
BolC3t15795H Brassica oleracea HOM05D007568 ORTHO05D041881 2.5e-08 63.5 70 37.1
Carub.0016s0013 Capsella rubella HOM05D000353 ORTHO05D000174 2.5e-08 63.5 238 23.9
A06p43450 Brassica napus HOM05D000353 ORTHO05D000174 4.3e-08 62.8 207 24.6
BolC4t27105H Brassica oleracea HOM05D000353 ORTHO05D000174 7.4e-08 62.0 207 25.1
TPR.G15973 Trifolium pratense HOM05D001685 ORTHO05D007488 9.7e-08 61.6 204 24.0
AL4G20710 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.3e-07 61.2 133 27.1
BcaB03g16430 Brassica carinata HOM05D000353 ORTHO05D000174 1.3e-07 61.2 236 23.3
BcaB07g32743 Brassica carinata HOM05D000353 ORTHO05D000174 1.3e-07 61.2 151 25.2
Carub.0001s3690 Capsella rubella HOM05D000353 ORTHO05D021412 1.3e-07 61.2 138 25.4
TPR.G34836 Trifolium pratense HOM05D000096 ORTHO05D000045 1.3e-07 61.2 205 24.4
AL6G41920 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.6e-07 60.8 131 27.5
C04p55780 Brassica napus HOM05D000353 ORTHO05D000174 2.2e-07 60.5 183 25.1
BolC9t53770H Brassica oleracea HOM05D000353 ORTHO05D000174 2.8e-07 60.1 173 23.1
Carub.0005s0866 Capsella rubella HOM05D012762 ORTHO05D011313 2.8e-07 60.1 138 24.6
AL8G20950 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 6.3e-07 58.9 216 22.7
BolC7t42687H Brassica oleracea HOM05D007568 ORTHO05D009779 1.4e-06 57.8 85 36.5
Carub.0012s0008 Capsella rubella HOM05D000353 ORTHO05D010269 1.4e-06 57.8 138 24.6
Carub.0016s0005 Capsella rubella HOM05D000353 ORTHO05D000174 1.4e-06 57.8 135 24.4
BraA01t04645Z Brassica rapa HOM05D007568 ORTHO05D027567 2.4e-06 57.0 49 59.2
BcaC05g29145 Brassica carinata HOM05D000353 ORTHO05D000174 3.1e-06 56.6 130 24.6
C03p19550 Brassica napus HOM05D007568 ORTHO05D009779 3.1e-06 56.6 77 33.8
BolC4t23854H Brassica oleracea HOM05D000353 ORTHO05D000174 3.1e-06 56.6 142 24.6
AL1G55600 Arabidopsis lyrata HOM05D007965 ORTHO05D010269 4.1e-06 56.2 128 26.6
A01p21770 Brassica napus HOM05D000353 ORTHO05D000174 6.9e-06 55.5 152 25.7
BolC8t50705H Brassica oleracea HOM05D000353 ORTHO05D000174 9.0e-06 55.1 152 25.0


User provided reference genes

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