Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06135 Brassica carinata HOM05D006291 ORTHO05D007669 8.7e-58 226.9 124 100.0
C03p18890 Brassica napus HOM05D006291 ORTHO05D007669 8.7e-58 226.9 124 100.0
A03p16050 Brassica napus HOM05D006291 ORTHO05D007669 9.6e-57 223.4 124 98.4
BcaB01g04158 Brassica carinata HOM05D006291 ORTHO05D007669 5.5e-52 207.6 137 86.1
Sp6g13890 Schrenkiella parvula HOM05D006291 ORTHO05D007669 1.0e-50 203.4 124 89.5
Thhalv10015026m.g Eutrema salsugineum HOM05D006291 ORTHO05D007669 7.4e-49 197.2 124 86.3
AT2G07340 Arabidopsis thaliana HOM05D006291 ORTHO05D007669 6.3e-48 194.1 129 82.2
Carub.0013s0004 Capsella rubella HOM05D006291 ORTHO05D007669 1.4e-47 193.0 129 82.2
THA.LOC104826574 Tarenaya hassleriana HOM05D006291 ORTHO05D007669 1.1e-44 183.3 129 78.3
SGA_v2.0_scaffold21G09601 Striga asiatica HOM05D006291 ORTHO05D007669 1.6e-43 179.5 129 76.0
Migut.L01922 Erythranthe guttata HOM05D006291 ORTHO05D007669 3.0e-42 175.3 129 75.2
Aqoxy7G02914 Aquilegia oxysepala HOM05D006291 ORTHO05D007669 5.1e-42 174.5 129 75.2
Rhsim01G0107900 Rhododendron simsii HOM05D006291 ORTHO05D007669 1.1e-41 173.3 129 76.0
Actinidia38532 Actinidia chinensis HOM05D006291 ORTHO05D007669 1.5e-41 172.9 128 75.0
Aa31LG8G11030 Aethionema arabicum HOM05D006291 ORTHO05D007669 1.5e-41 172.9 172 61.6
Duzib128G2031 Durio zibethinus HOM05D006291 ORTHO05D007669 2.0e-41 172.6 128 75.0
PSO170G1648 Papaver somniferum HOM05D006291 ORTHO05D007669 2.0e-41 172.6 129 72.9
GSVIVG01032270001 Vitis vinifera HOM05D006291 ORTHO05D007669 2.5e-41 172.2 128 73.4
Nn8g40626 Nelumbo nucifera HOM05D006291 ORTHO05D007669 4.3e-41 171.4 128 73.4
PSO063G7114 Papaver somniferum HOM05D006291 ORTHO05D007669 4.3e-41 171.4 129 72.1
Duzib128G1629 Durio zibethinus HOM05D006291 ORTHO05D007669 5.7e-41 171.0 128 74.2
MD16G1236600 Malus domestica HOM05D006291 ORTHO05D007669 5.7e-41 171.0 128 73.4
Thecc.10G119800 Theobroma cacao HOM05D006291 ORTHO05D007669 5.7e-41 171.0 123 76.4
COL.COLO4_05650 Corchorus olitorius HOM05D006291 ORTHO05D007669 7.4e-41 170.6 129 74.4
MD13G1231800 Malus domestica HOM05D006291 ORTHO05D007669 9.7e-41 170.2 128 71.9
Manes.02G198400 Manihot esculenta HOM05D006291 ORTHO05D007669 1.3e-40 169.9 128 72.7
Prupe.1G063000 Prunus persica HOM05D006291 ORTHO05D007669 1.3e-40 169.9 128 72.7
Gorai.009G302200 Gossypium raimondii HOM05D006291 ORTHO05D007669 2.2e-40 169.1 131 71.0
FAN22G0966 Fragaria x ananassa HOM05D006291 ORTHO05D007669 2.8e-40 168.7 128 71.1
CAN.G54.10 Capsicum annuum HOM05D006291 ORTHO05D007669 3.7e-40 168.3 128 71.9
FAN07G2657 Fragaria x ananassa HOM05D006291 ORTHO05D007669 4.8e-40 167.9 128 70.3
Gohir.D05G287200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 6.3e-40 167.5 129 71.3
FvH4_4g05950 Fragaria vesca HOM05D006291 ORTHO05D007669 8.2e-40 167.2 128 70.3
AUR62020734 Chenopodium quinoa HOM05D006291 ORTHO05D007669 1.1e-39 166.8 128 71.9
AUR62027977 Chenopodium quinoa HOM05D006291 ORTHO05D007669 1.1e-39 166.8 128 71.9
RcHm_v2.0_Chr4g0397141 Rosa chinensis HOM05D006291 ORTHO05D007669 1.1e-39 166.8 128 70.3
PGSC0003DMG400013569 Solanum tuberosum HOM05D006291 ORTHO05D007669 1.1e-39 166.8 128 71.9
EL10Ac2g03616 Beta vulgaris HOM05D006291 ORTHO05D007669 1.4e-39 166.4 128 71.1
FAN12G2114 Fragaria x ananassa HOM05D006291 ORTHO05D007669 1.4e-39 166.4 130 69.2
Actinidia02463 Actinidia chinensis HOM05D006291 ORTHO05D007669 2.4e-39 165.6 129 72.1
CSS0003994 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 2.4e-39 165.6 129 71.3
CSS0013846 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 2.4e-39 165.6 129 71.3
Solyc07g042620.4 Solanum lycopersicum HOM05D006291 ORTHO05D007669 3.1e-39 165.2 126 72.2
Sopen07g022310 Solanum pennellii HOM05D006291 ORTHO05D007669 3.1e-39 165.2 126 72.2
Nitab4.5_0003139g0110 Nicotiana tabacum HOM05D006291 ORTHO05D007669 4.1e-39 164.9 128 71.1
MSTRG.10473 Avicennia marina HOM05D006291 ORTHO05D007669 5.3e-39 164.5 129 70.5
arahy.Tifrunner.gnm1.ann1.8H1PJC Arachis hypogaea HOM05D006291 ORTHO05D007669 6.9e-39 164.1 129 70.5
arahy.Tifrunner.gnm1.ann1.SCY2K5 Arachis hypogaea HOM05D006291 ORTHO05D007669 9.1e-39 163.7 127 70.1
Potri.006G079700 Populus trichocarpa HOM05D006291 ORTHO05D007669 9.1e-39 163.7 128 69.5
CiPaw.16G104700 Carya illinoinensis HOM05D006291 ORTHO05D007669 1.2e-38 163.3 128 70.3
TAR362G0416 Trochodendron aralioides HOM05D006291 ORTHO05D007669 1.5e-38 162.9 128 69.5
Ah.10g032820 Amaranthus hybridus HOM05D006291 ORTHO05D007669 2.0e-38 162.5 128 69.5
Cc06_g23850 Coffea canephora HOM05D006291 ORTHO05D007669 2.0e-38 162.5 129 71.3
Zm00001eb240760 Zea mays HOM05D006291 ORTHO05D007669 2.0e-38 162.5 128 67.2
BraA03t10896Z Brassica rapa HOM05D006291 ORTHO05D007669 2.6e-38 162.2 89 96.6
Sabra06G0060300 Salix brachista HOM05D006291 ORTHO05D007669 4.5e-38 161.4 128 69.5
TWI63G0490 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 4.5e-38 161.4 128 70.3
Gohir.A05G286200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 5.9e-38 161.0 122 71.3
Sc23g0004310 Simmondsia chinensis HOM05D006291 ORTHO05D007669 7.7e-38 160.6 129 69.0
Peaxi162Scf00474g00519 Petunia axillaris HOM05D006291 ORTHO05D007669 1.0e-37 160.2 128 68.8
PGR044G0028 Punica granatum HOM05D006291 ORTHO05D007669 1.3e-37 159.8 128 68.8
Hund19355 Selenicereus undatus HOM05D006291 ORTHO05D007669 1.7e-37 159.5 115 73.0
ATR0580G035 Amborella trichopoda HOM05D006291 ORTHO05D007669 2.2e-37 159.1 126 67.5
ECA234G1508 Erigeron canadensis HOM05D006291 ORTHO05D007669 2.2e-37 159.1 128 68.0
Ciclev10009894m.g Citrus clementina HOM05D006291 ORTHO05D007669 2.9e-37 158.7 128 68.8
Glyma.15G235500 Glycine max HOM05D006291 ORTHO05D007669 2.9e-37 158.7 128 66.4
Glyma.13G197100 Glycine max HOM05D006291 ORTHO05D007669 3.8e-37 158.3 128 66.4
CSS0029803 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 1.1e-36 156.8 135 67.4
Eucgr.G00957 Eucalyptus grandis HOM05D006291 ORTHO05D007669 1.1e-36 156.8 128 67.2
HanXRQChr10g0309491 Helianthus annuus HOM05D006291 ORTHO05D007669 1.1e-36 156.8 127 68.5
HanXRQChr12g0358571 Helianthus annuus HOM05D006291 ORTHO05D007669 1.1e-36 156.8 128 68.0
HPP92_021942 Vanilla planifolia HOM05D006291 ORTHO05D007669 1.1e-36 156.8 128 65.6
Phvul.011G206700 Phaseolus vulgaris HOM05D006291 ORTHO05D007669 1.4e-36 156.4 128 65.6
Lj3g0009914 Lotus japonicus HOM05D006291 ORTHO05D007669 1.9e-36 156.0 128 66.4
HPP92_021968 Vanilla planifolia HOM05D006291 ORTHO05D007669 3.2e-36 155.2 127 65.4
VMungo1127G1563 Vigna mungo HOM05D006291 ORTHO05D007669 3.2e-36 155.2 128 65.6
CsaV3_2G009230 Cucumis sativus L. HOM05D006291 ORTHO05D007669 4.2e-36 154.8 119 71.4
Oeu028819.1 Olea europaea HOM05D006291 ORTHO05D007669 5.5e-36 154.5 113 75.2
BolC9t56988H Brassica oleracea HOM05D006291 ORTHO05D007669 7.2e-36 154.1 87 94.3
Potri.018G149200 Populus trichocarpa HOM05D006291 ORTHO05D007669 1.2e-35 153.3 128 65.6
unitig_8.g3543 Utricularia gibba HOM05D006291 ORTHO05D007669 1.6e-35 152.9 126 65.9
TPR.G27823 Trifolium pratense HOM05D006291 ORTHO05D007669 3.6e-35 151.8 129 64.3
Ca_23954_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 7.9e-35 150.6 129 63.6
Lalb_Chr01g0007741 Lupinus albus HOM05D006291 ORTHO05D007669 7.9e-35 150.6 129 64.3
CDE02G3570 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 1.8e-34 149.4 125 65.6
Sed0008839 Sechium edule HOM05D006291 ORTHO05D007669 3.0e-34 148.7 121 68.6
CDE06G0918 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 5.1e-34 147.9 127 63.0
MELO3C003910.2 Cucumis melo HOM05D006291 ORTHO05D007669 5.1e-34 147.9 119 68.9
Lsat_1_v5_gn_5_80980 Lactuca sativa HOM05D006291 ORTHO05D007669 5.1e-34 147.9 124 67.7
BcaC04g20645 Brassica carinata HOM05D006291 ORTHO05D007669 8.8e-34 147.1 97 85.6
Psat0s418g0040 Pisum sativum HOM05D006291 ORTHO05D007669 1.1e-33 146.7 129 62.0
AL3G44130 Arabidopsis lyrata HOM05D006291 ORTHO05D007669 1.5e-33 146.4 99 81.8
C09p41100 Brassica napus HOM05D006291 ORTHO05D007669 1.5e-33 146.4 93 87.1
CANSAT56G1353 Cannabis sativa HOM05D006291 ORTHO05D007669 3.3e-33 145.2 128 62.5
CANSAT56G3141 Cannabis sativa HOM05D006291 ORTHO05D007669 3.3e-33 145.2 128 62.5
Dinv26485 Davidia involucrata HOM05D006291 ORTHO05D007669 7.4e-33 144.1 125 67.2
Ca_23960_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 8.2e-32 140.6 121 63.6
CDE06G1428 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 1.1e-31 140.2 127 62.2
DCAR_020455 Daucus carota HOM05D006291 ORTHO05D007669 5.9e-30 134.4 104 73.1
TWI32G0019 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 7.7e-30 134.0 116 66.4
MBI16_g09344_MAGBIO Magnolia biondii HOM05D006291 ORTHO05D007669 5.5e-28 127.9 186 47.3
Atru.BG.15.p Acer truncatum HOM05D006291 ORTHO05D007669 2.1e-27 125.9 96 71.9
Medtr8g039140 Medicago truncatula HOM05D006291 ORTHO05D007669 6.1e-27 124.4 104 65.4
Actinidia02472 Actinidia chinensis HOM05D006291 ORTHO05D007669 6.7e-26 120.9 92 72.8
Mapoly0027s0144 Marchantia polymorpha HOM05D006291 ORTHO05D007669 8.8e-26 120.6 128 52.3
Pp3c19_4350 Physcomitrium patens HOM05D006291 ORTHO05D007669 5.7e-25 117.9 128 50.8
BolC3t14281H Brassica oleracea HOM05D006291 ORTHO05D007669 1.3e-24 116.7 66 98.5
BolC3t14280H Brassica oleracea HOM05D006291 ORTHO05D007669 2.2e-24 115.9 59 100.0
Nitab4.5_0000170g0080 Nicotiana tabacum HOM05D006291 ORTHO05D007669 2.2e-24 115.9 96 66.7
Dinv12620 Davidia involucrata HOM05D006291 ORTHO05D007669 5.3e-23 111.3 92 68.5
SMO200G0161 Selaginella moellendorffii HOM05D006291 ORTHO05D007669 1.3e-21 106.7 119 49.6
BcaB08g35517 Brassica carinata HOM05D006291 ORTHO05D007669 2.2e-21 105.9 65 86.2
CARHR104040 Cardamine hirsuta HOM05D006291 ORTHO05D007669 8.5e-21 104.0 59 88.1
AagrBONN_evm.TU.Sc2ySwM_362.1895 Anthoceros agrestis HOM05D006291 ORTHO05D007669 3.4e-17 92.0 99 49.5
Os02g0462900 Oryza sativa ssp. japonica HOM05D006291 ORTHO05D007669 3.4e-17 92.0 59 74.6
Nitab4.5_0002603g0030 Nicotiana tabacum HOM05D006291 ORTHO05D007669 1.3e-16 90.1 72 66.7
SalBow3G3584 Salvia bowleyana HOM05D006291 ORTHO05D007669 1.7e-16 89.7 105 50.5
ClCG11G011210 Citrullus lanatus HOM05D006291 ORTHO05D007669 4.8e-16 88.2 59 72.9
Actinidia07563 Actinidia chinensis HOM05D006291 ORTHO05D007669 2.0e-14 82.8 66 71.2
SEGI_05817 Sequoiadendron giganteum HOM05D006291 ORTHO05D007669 1.6e-11 73.2 64 56.2
Cpa.g.sc91.61 Carica papaya HOM05D006291 ORTHO05D007669 4.7e-11 71.6 53 73.6
PRCOL_00006384 Prasinoderma coloniale HOM05D006291 ORTHO05D007669 5.7e-09 64.7 114 35.1
vmacro20755 Vaccinium macrocarpon HOM05D006291 ORTHO05D007669 4.5e-06 55.1 54 63.0
CBR_g16047 Chara braunii HOM05D006291 ORTHO05D007669 5.9e-06 54.7 65 41.5


User provided reference genes

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