Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06128 Brassica carinata HOM05D007220 ORTHO05D009058 2.4e-93 345.5 178 100.0
C03p18980 Brassica napus HOM05D007220 ORTHO05D009058 2.4e-93 345.5 178 100.0
BolC3t14287H Brassica oleracea HOM05D007220 ORTHO05D009058 2.4e-93 345.5 178 100.0
BraA03t10902Z Brassica rapa HOM05D007220 ORTHO05D009058 8.9e-88 327.0 179 96.6
BcaB01g04168 Brassica carinata HOM05D007220 ORTHO05D009058 2.1e-81 305.8 179 91.1
A03p16110 Brassica napus HOM05D007220 ORTHO05D009058 1.0e-75 287.0 178 85.4
Sp6g13740 Schrenkiella parvula HOM05D007220 ORTHO05D009058 8.9e-72 273.9 181 79.0
AL8G25850 Arabidopsis lyrata HOM05D007220 ORTHO05D009058 4.9e-70 268.1 190 75.3
AT5G51545 Arabidopsis thaliana HOM05D007220 ORTHO05D009058 1.1e-69 266.9 188 75.5
Carub.0008s1158 Capsella rubella HOM05D007220 ORTHO05D009058 5.4e-69 264.6 183 75.4
CARHR264320 Cardamine hirsuta HOM05D007220 ORTHO05D009058 4.0e-64 248.4 189 71.4
THA.LOC104811513 Tarenaya hassleriana HOM05D007220 ORTHO05D009058 9.3e-61 237.3 192 66.1
Aa31LG3G7960 Aethionema arabicum HOM05D007220 ORTHO05D009058 5.6e-58 228.0 180 67.2
Thecc.03G158900 Theobroma cacao HOM05D007220 ORTHO05D009058 2.1e-49 199.5 194 60.3
Duzib205G1715 Durio zibethinus HOM05D007220 ORTHO05D009058 5.8e-47 191.4 195 57.9
COL.COLO4_14153 Corchorus olitorius HOM05D007220 ORTHO05D009058 1.7e-46 189.9 191 57.1
Manes.14G034000 Manihot esculenta HOM05D007220 ORTHO05D009058 1.9e-45 186.4 201 52.7
MD01G1184500 Malus domestica HOM05D007220 ORTHO05D009058 6.0e-44 181.4 191 56.5
TWI39G1186 Tripterygium wilfordii HOM05D007220 ORTHO05D009058 1.8e-43 179.9 192 54.7
Cpa.g.sc3.292 Carica papaya HOM05D007220 ORTHO05D009058 2.3e-43 179.5 193 53.4
Cfa008220 Carpinus fangiana HOM05D007220 ORTHO05D009058 2.3e-43 179.5 190 54.7
FAN10G3220 Fragaria x ananassa HOM05D007220 ORTHO05D009058 8.7e-43 177.6 174 59.8
FAN03G0488 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.9e-42 176.4 175 59.4
FAN03G2818 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.9e-42 176.4 175 59.4
Haze_13838 Corylus avellana HOM05D007220 ORTHO05D009058 2.5e-42 176.0 190 55.8
ClCG05G007450 Citrullus lanatus HOM05D007220 ORTHO05D009058 3.3e-42 175.6 198 56.6
CsaV3_3G016270 Cucumis sativus L. HOM05D007220 ORTHO05D009058 7.4e-42 174.5 192 55.7
FAN06G4318 Fragaria x ananassa HOM05D007220 ORTHO05D009058 7.4e-42 174.5 175 60.0
FAN06G0674 Fragaria x ananassa HOM05D007220 ORTHO05D009058 9.6e-42 174.1 175 58.9
MELO3C006826.2 Cucumis melo HOM05D007220 ORTHO05D009058 1.6e-41 173.3 198 56.1
FvH4_7g27960 Fragaria vesca HOM05D007220 ORTHO05D009058 1.6e-41 173.3 175 60.0
RcHm_v2.0_Chr1g0374911 Rosa chinensis HOM05D007220 ORTHO05D009058 2.1e-41 172.9 173 60.1
Ciclev10005924m.g Citrus clementina HOM05D007220 ORTHO05D009058 4.8e-41 171.8 204 52.5
FAN01G2832 Fragaria x ananassa HOM05D007220 ORTHO05D009058 8.2e-41 171.0 167 59.3
GSVIVG01018558001 Vitis vinifera HOM05D007220 ORTHO05D009058 1.4e-40 170.2 174 56.3
Dinv28549 Davidia involucrata HOM05D007220 ORTHO05D009058 1.5e-39 166.8 204 52.0
Eucgr.A02878 Eucalyptus grandis HOM05D007220 ORTHO05D009058 2.2e-38 162.9 197 48.2
Gohir.A07G038900 Gossypium hirsutum HOM05D007220 ORTHO05D009058 6.5e-38 161.4 184 51.6
Sabra15G0142900 Salix brachista HOM05D007220 ORTHO05D009058 6.5e-38 161.4 198 52.0
Potri.015G129600 Populus trichocarpa HOM05D007220 ORTHO05D009058 1.4e-37 160.2 198 52.5
SGA_v2.0_scaffold486G52391 Striga asiatica HOM05D007220 ORTHO05D009058 1.4e-37 160.2 187 52.4
Dinv22967 Davidia involucrata HOM05D007220 ORTHO05D009058 4.2e-37 158.7 141 61.7
CiPaw.04G061800 Carya illinoinensis HOM05D007220 ORTHO05D009058 7.1e-37 157.9 203 47.8
QL09p019051 Quercus lobata HOM05D007220 ORTHO05D009058 7.1e-37 157.9 204 48.0
Atru.chr1.664 Acer truncatum HOM05D007220 ORTHO05D009058 1.6e-36 156.8 196 49.0
Gorai.001G046100 Gossypium raimondii HOM05D007220 ORTHO05D009058 1.6e-36 156.8 184 50.5
Gohir.D07G043100 Gossypium hirsutum HOM05D007220 ORTHO05D009058 2.1e-36 156.4 184 50.5
Thhalv10015015m.g Eutrema salsugineum HOM05D007220 ORTHO05D009058 4.6e-36 155.2 117 73.5
Actinidia25024 Actinidia chinensis HOM05D007220 ORTHO05D009058 6.0e-36 154.8 190 50.0
MSTRG.27183 Avicennia marina HOM05D007220 ORTHO05D009058 2.3e-35 152.9 190 48.9
Glyma.09G232600 Glycine max HOM05D007220 ORTHO05D009058 5.1e-35 151.8 148 55.4
vmacro09892 Vaccinium macrocarpon HOM05D007220 ORTHO05D009058 6.7e-35 151.4 199 48.7
AUR62016183 Chenopodium quinoa HOM05D007220 ORTHO05D009058 1.5e-34 150.2 195 49.2
PGR042G1708 Punica granatum HOM05D007220 ORTHO05D009058 1.9e-34 149.8 197 46.7
SGA_v2.0_scaffold2G01175 Striga asiatica HOM05D007220 ORTHO05D009058 2.5e-34 149.4 190 51.1
Cc02_g04040 Coffea canephora HOM05D007220 ORTHO05D009058 3.3e-34 149.1 224 46.0
Nn4g26358 Nelumbo nucifera HOM05D007220 ORTHO05D009058 5.7e-34 148.3 201 44.3
Sc19g0001910 Simmondsia chinensis HOM05D007220 ORTHO05D009058 5.7e-34 148.3 184 51.1
Rhsim09G0192800 Rhododendron simsii HOM05D007220 ORTHO05D009058 1.3e-33 147.1 138 60.1
HanXRQChr08g0223851 Helianthus annuus HOM05D007220 ORTHO05D009058 3.7e-33 145.6 177 50.3
arahy.Tifrunner.gnm1.ann1.0IXC5E Arachis hypogaea HOM05D007220 ORTHO05D009058 1.1e-32 144.1 109 66.1
Lsat_1_v5_gn_8_9340 Lactuca sativa HOM05D007220 ORTHO05D009058 2.4e-32 142.9 183 50.3
Ca_30916_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 5.3e-32 141.7 147 54.4
Solyc03g083570.3 Solanum lycopersicum HOM05D007220 ORTHO05D009058 6.9e-32 141.4 174 50.0
Medtr4g035825 Medicago truncatula HOM05D007220 ORTHO05D009058 9.0e-32 141.0 185 47.6
SalBow4G2286 Salvia bowleyana HOM05D007220 ORTHO05D009058 9.0e-32 141.0 184 48.9
unitig_46.g18768 Utricularia gibba HOM05D007220 ORTHO05D009058 1.2e-31 140.6 173 49.7
CAN.G152.17 Capsicum annuum HOM05D007220 ORTHO05D009058 5.9e-31 138.3 109 63.3
CSS0026352 Camellia sinensis var. sinensis HOM05D007220 ORTHO05D009058 1.3e-30 137.1 107 64.5
EL10Ac3g05813 Beta vulgaris HOM05D007220 ORTHO05D009058 1.7e-30 136.7 148 57.4
Lj8A39T34 Lonicera japonica HOM05D007220 ORTHO05D009058 2.9e-30 136.0 177 48.6
Migut.F00451 Erythranthe guttata HOM05D007220 ORTHO05D009058 5.0e-30 135.2 101 65.3
Lj3g0016008 Lotus japonicus HOM05D007220 ORTHO05D009058 6.5e-30 134.8 144 55.6
Peaxi162Scf00241g00624 Petunia axillaris HOM05D007220 ORTHO05D009058 8.5e-30 134.4 125 59.2
Nitab4.5_0001548g0050 Nicotiana tabacum HOM05D007220 ORTHO05D009058 1.9e-29 133.3 173 49.1
Psat7g150000 Pisum sativum HOM05D007220 ORTHO05D009058 2.5e-29 132.9 188 45.7
ECA233G2338 Erigeron canadensis HOM05D007220 ORTHO05D009058 3.2e-29 132.5 145 54.5
Sopen03g023380 Solanum pennellii HOM05D007220 ORTHO05D009058 1.2e-28 130.6 110 60.0
Phvul.011G004500 Phaseolus vulgaris HOM05D007220 ORTHO05D009058 1.6e-28 130.2 161 49.1
VMungo1127G0384 Vigna mungo HOM05D007220 ORTHO05D009058 1.6e-28 130.2 161 49.1
Nitab4.5_0000072g0560 Nicotiana tabacum HOM05D007220 ORTHO05D009058 2.7e-28 129.4 187 45.5
Aqoxy7G00673 Aquilegia oxysepala HOM05D007220 ORTHO05D009058 5.1e-27 125.2 182 45.1
CDE09G0763 Ceratophyllum demersum HOM05D007220 ORTHO05D009058 7.4e-26 121.3 139 51.1
PSO782G3417 Papaver somniferum HOM05D007220 ORTHO05D009058 1.2e-23 114.0 109 50.5
Prupe.2G280700 Prunus persica HOM05D007220 ORTHO05D009058 1.2e-23 114.0 141 53.2
PSO478G4327 Papaver somniferum HOM05D007220 ORTHO05D009058 4.5e-23 112.1 109 49.5
Potri.012G128000 Populus trichocarpa HOM05D007220 ORTHO05D009058 4.5e-23 112.1 199 41.7
Zm00001eb230760 Zea mays HOM05D007220 ORTHO05D009058 5.9e-23 111.7 141 51.1
arahy.Tifrunner.gnm1.ann1.83G6QR Arachis hypogaea HOM05D007220 ORTHO05D009058 2.2e-22 109.8 83 63.9
SEGI_29714 Sequoiadendron giganteum HOM05D007220 ORTHO05D009058 2.9e-22 109.4 133 48.1
AUR62035102 Chenopodium quinoa HOM05D007220 ORTHO05D009058 2.1e-20 103.2 194 38.7
HPP92_002073 Vanilla planifolia HOM05D007220 ORTHO05D009058 6.1e-20 101.7 132 45.5
TPR.G15117 Trifolium pratense HOM05D007220 ORTHO05D009058 6.7e-19 98.2 71 64.8
PGSC0003DMG400023001 Solanum tuberosum HOM05D007220 ORTHO05D009058 8.8e-19 97.8 177 36.7
ATR0730G016 Amborella trichopoda HOM05D007220 ORTHO05D009058 2.6e-18 96.3 114 52.6
DCAR_009422 Daucus carota HOM05D007220 ORTHO05D009058 4.4e-18 95.5 156 45.5
DCAR_009423 Daucus carota HOM05D007220 ORTHO05D009058 4.4e-18 95.5 156 45.5
TAR629G2293 Trochodendron aralioides HOM05D007220 ORTHO05D009058 2.2e-14 83.2 146 39.0
Sed0003033 Sechium edule HOM05D007220 ORTHO05D009058 8.5e-14 81.3 156 42.9
MD07G1256600 Malus domestica HOM05D007220 ORTHO05D009058 1.1e-13 80.9 53 69.8
Pp3c26_11240 Physcomitrium patens HOM05D007220 ORTHO05D009058 1.9e-13 80.1 116 40.5
HanXRQChr04g0107801 Helianthus annuus HOM05D000901 ORTHO05D001160 2.5e-13 79.7 133 41.4
Ca_20051_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 2.7e-12 76.3 99 47.5
Mapoly0002s0242 Marchantia polymorpha HOM05D007220 ORTHO05D009058 3.9e-11 72.4 132 34.8
AagrBONN_evm.TU.Sc2ySwM_228.5821 Anthoceros agrestis HOM05D007220 ORTHO05D009058 5.2e-11 72.0 142 33.8
MBI12_g20320_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 7.4e-10 68.2 44 70.5
MBI12_g14970_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 1.0e-06 57.8 55 54.5


User provided reference genes

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