Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 5.2e-244 847.4 470 100.0
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.1e-214 750.0 420 99.8
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.9e-201 706.1 395 99.7
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 3.9e-167 592.0 499 72.9
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.1e-164 583.9 499 73.1
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 5.3e-164 581.6 502 72.3
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 5.8e-163 578.2 499 71.5
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.2e-162 576.2 499 71.3
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 2.9e-162 575.9 498 71.5
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 9.3e-161 570.9 499 70.7
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 9.3e-161 570.9 499 70.5
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.0e-155 553.1 496 69.6
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 7.7e-155 551.2 496 69.4
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 5.0e-154 548.5 498 68.9
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 2.5e-150 536.2 488 68.9
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.0e-147 526.6 506 65.4
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.9e-137 493.4 493 64.1
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 2.9e-122 443.0 489 58.3
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 6.5e-122 441.8 490 58.4
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 9.4e-121 438.0 491 58.7
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.8e-119 433.7 494 56.9
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 3.0e-119 433.0 493 57.2
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 5.2e-119 432.2 496 57.1
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 5.2e-119 432.2 489 57.3
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.0e-118 430.3 492 56.9
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.4e-118 429.1 495 57.2
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.5e-118 428.3 495 57.2
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 7.5e-118 428.3 491 57.0
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 7.5e-118 428.3 497 56.1
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.7e-117 427.2 491 55.4
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.7e-117 427.2 493 57.2
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 2.2e-117 426.8 491 56.0
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.2e-117 426.8 493 57.0
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.2e-117 426.8 480 57.1
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 2.8e-117 426.4 491 56.4
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.8e-116 423.7 489 56.0
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.4e-116 423.3 485 56.9
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.1e-116 422.9 485 56.9
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 5.4e-116 422.2 484 57.0
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 5.4e-116 422.2 495 56.6
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 9.1e-116 421.4 486 56.6
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.2e-115 421.0 490 55.9
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.2e-115 421.0 503 55.9
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 2.7e-115 419.9 492 55.9
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 3.5e-115 419.5 489 56.0
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 1.0e-114 417.9 489 55.2
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.3e-114 417.5 490 55.3
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.7e-114 417.2 488 56.1
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 2.9e-114 416.4 496 57.7
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.9e-114 416.4 498 55.0
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 3.8e-114 416.0 484 57.0
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 6.6e-114 415.2 487 56.1
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.1e-113 414.5 482 56.2
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-113 414.1 515 53.4
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.3e-113 412.9 486 56.4
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 4.2e-113 412.5 484 56.6
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 5.5e-113 412.1 482 56.0
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 9.5e-113 411.4 489 54.6
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 9.5e-113 411.4 486 55.6
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.2e-112 411.0 481 56.3
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.6e-112 410.6 480 56.9
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 6.1e-112 408.7 482 55.8
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.0e-111 406.0 519 53.0
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 9.8e-110 401.4 490 52.9
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 1.7e-109 400.6 489 54.8
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.2e-109 400.2 384 63.3
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 8.3e-109 398.3 494 55.3
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 1.2e-107 394.4 483 55.3
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.2e-107 394.4 490 53.1
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 3.5e-107 392.9 487 54.6
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 4.5e-107 392.5 494 54.5
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.3e-106 391.0 486 54.5
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.7e-106 390.6 488 54.7
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 6.6e-106 388.7 488 54.5
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.9e-105 387.1 496 52.6
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.9e-105 387.1 490 53.7
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 3.3e-105 386.3 496 53.0
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 4.3e-105 386.0 491 54.0
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 5.6e-105 385.6 490 53.9
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 9.5e-105 384.8 484 52.9
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.2e-104 384.4 495 53.1
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.2e-104 384.4 490 52.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 1.6e-104 384.0 488 52.3
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.6e-104 384.0 490 51.6
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 6.1e-104 382.1 503 51.9
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 4.0e-103 379.4 480 52.5
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 4.0e-103 379.4 486 53.9
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 2.6e-102 376.7 492 50.8
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 4.4e-102 375.9 479 53.9
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.7e-101 374.0 482 52.1
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.9e-100 370.5 482 52.1
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.2e-99 367.9 486 52.9
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 2.0e-99 367.1 512 49.8
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.3e-98 364.4 390 57.9
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.6e-96 357.5 388 57.7
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.6e-96 356.3 435 55.2
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 4.7e-96 355.9 491 50.5
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 8.0e-96 355.1 491 48.7
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 8.0e-96 355.1 477 50.3
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.4e-95 354.4 501 50.7
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.3e-95 353.6 497 49.9
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 3.1e-95 353.2 480 51.2
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.8e-95 352.1 493 49.1
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 2.9e-93 346.7 493 49.1
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 3.7e-93 346.3 466 50.9
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 3.7e-93 346.3 492 50.2
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 4.1e-92 342.8 488 48.2
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 9.2e-92 341.7 497 49.7
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.5e-91 339.7 490 48.6
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 6.6e-90 335.5 474 48.5
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.9e-89 334.0 362 58.3
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.4e-84 315.8 387 54.8
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 7.1e-84 315.5 385 52.7
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.0e-82 311.6 461 50.1
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.2e-80 302.4 364 54.9
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 2.6e-78 297.0 488 45.9
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.1e-75 287.3 374 54.0
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 6.0e-75 285.8 293 64.5
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.4e-71 273.9 219 71.2
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 3.8e-69 266.5 470 43.2
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 6.4e-69 265.8 259 62.5
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 5.8e-62 242.7 276 55.1
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 3.0e-58 230.3 392 41.6
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.6e-49 198.7 208 59.6
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.0e-37 159.8 196 53.6
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 3.6e-35 153.7 248 45.6
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 7.9e-35 152.5 376 35.6
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 9.7e-33 145.6 331 36.6
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 5.3e-31 139.8 445 32.4
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 1.2e-30 138.7 131 61.1
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 4.5e-30 136.7 132 62.9
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.4e-28 131.7 410 32.9
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.1e-23 115.5 268 36.9
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.2e-22 112.1 71 93.0
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.1e-17 95.5 352 31.0
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.6e-17 94.4 79 64.6
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 3.3e-17 94.0 289 30.8
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.8e-15 88.2 105 53.3
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.5e-14 83.6 323 30.0
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 3.6e-11 73.9 105 49.5
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.5e-09 66.2 58 60.3
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.5e-09 66.2 58 60.3
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 8.3e-08 62.8 90 38.9
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 2.4e-07 61.2 59 62.7
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.0e-07 59.7 58 55.2
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.5e-06 57.4 51 68.6
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 3.5e-06 57.4 67 50.7


User provided reference genes

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