Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 1.4e-47 192.6 92 100.0
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 5.2e-31 137.5 81 80.2
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 5.2e-31 137.5 81 81.5
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 5.2e-31 137.5 82 79.3
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 8.8e-31 136.7 81 79.0
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 1.5e-30 136.0 81 80.2
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 4.4e-30 134.4 81 77.8
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 9.7e-30 133.3 81 79.0
BcaB01g04050 Brassica carinata HOM05D006190 ORTHO05D008260 2.2e-29 132.1 64 100.0
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 2.8e-29 131.7 78 80.8
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 1.1e-28 129.8 81 76.5
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 1.1e-28 129.8 81 75.3
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 5.3e-28 127.5 81 74.1
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.2e-26 122.1 81 70.4
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 5.5e-25 117.5 81 65.4
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 4.1e-20 101.3 86 60.5
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 5.4e-20 100.9 84 57.1
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 7.0e-20 100.5 84 56.0
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 9.1e-20 100.1 83 59.0
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.6e-19 99.4 83 56.6
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 1.6e-19 99.4 83 56.6
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 7.7e-19 97.1 84 56.0
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 1.0e-18 96.7 85 55.3
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 1.0e-18 96.7 84 54.8
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 1.3e-18 96.3 84 52.4
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 2.2e-18 95.5 83 55.4
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 2.2e-18 95.5 84 54.8
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 2.9e-18 95.1 85 52.9
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 6.5e-18 94.0 85 54.1
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 8.5e-18 93.6 57 73.7
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 1.5e-17 92.8 88 52.3
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 4.2e-17 91.3 84 53.6
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 5.5e-17 90.9 84 50.0
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 7.2e-17 90.5 88 51.1
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 7.2e-17 90.5 85 52.9
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 2.1e-16 89.0 84 50.0
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 3.6e-16 88.2 86 48.8
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 6.1e-16 87.4 88 52.3
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 1.0e-15 86.7 84 51.2
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 2.3e-15 85.5 86 54.7
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 2.3e-15 85.5 88 51.1
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 3.0e-15 85.1 86 52.3
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 3.0e-15 85.1 84 47.6
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 4.0e-15 84.7 87 51.7
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 4.0e-15 84.7 84 52.4
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 5.2e-15 84.3 87 50.6
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 1.2e-14 83.2 87 51.7
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.2e-14 83.2 85 50.6
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 1.5e-14 82.8 81 45.7
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 2.6e-14 82.0 85 45.9
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 3.4e-14 81.6 89 46.1
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 3.4e-14 81.6 86 52.3
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 4.4e-14 81.3 81 45.7
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 4.4e-14 81.3 81 44.4
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 7.5e-14 80.5 84 44.0
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 7.5e-14 80.5 85 49.4
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 1.3e-13 79.7 88 43.2
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.7e-13 79.3 84 44.0
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 1.7e-13 79.3 88 44.3
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 2.8e-13 78.6 90 38.9
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 2.8e-13 78.6 84 42.9
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.8e-13 78.6 85 48.2
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 3.7e-13 78.2 81 43.2
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 4.9e-13 77.8 84 42.9
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 4.9e-13 77.8 82 42.7
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 4.9e-13 77.8 81 46.9
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 1.1e-12 76.6 79 49.4
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 1.1e-12 76.6 87 43.7
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 1.1e-12 76.6 87 43.7
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 1.1e-12 76.6 85 44.7
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 1.4e-12 76.3 88 43.2
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 2.4e-12 75.5 81 43.2
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 2.4e-12 75.5 87 47.1
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 3.1e-12 75.1 87 44.8
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 4.1e-12 74.7 88 45.5
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 5.4e-12 74.3 57 56.1
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 7.0e-12 73.9 84 41.7
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 7.0e-12 73.9 85 43.5
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 7.0e-12 73.9 87 43.7
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 9.2e-12 73.6 85 45.9
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 1.2e-11 73.2 90 44.4
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 1.6e-11 72.8 88 44.3
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 2.0e-11 72.4 91 45.1
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 5.9e-11 70.9 77 50.6
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 7.8e-11 70.5 88 46.6
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 7.8e-11 70.5 85 43.5
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 1.0e-10 70.1 87 46.0
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 1.0e-10 70.1 74 44.6
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 2.9e-10 68.6 88 43.2
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 1.5e-09 66.2 87 34.5
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 1.5e-09 66.2 87 34.5
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 9.5e-09 63.5 60 55.0
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 1.2e-08 63.2 57 45.6
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 1.6e-08 62.8 76 43.4
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 1.6e-08 62.8 76 43.4
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 2.8e-08 62.0 81 40.7
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 3.6e-08 61.6 62 50.0
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 6.1e-08 60.8 81 38.3
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 1.8e-07 59.3 61 50.8


User provided reference genes

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