Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 1.2e-208 729.6 366 100.0
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.1e-177 626.7 351 92.9
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 4.4e-166 588.2 308 97.4
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.9e-92 343.6 427 51.8
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 4.6e-91 339.0 446 50.4
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 1.4e-90 337.4 455 49.2
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 2.0e-89 333.6 414 51.7
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 2.0e-89 333.6 416 51.0
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 2.0e-89 333.6 416 51.0
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 3.3e-89 332.8 414 51.4
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 4.8e-88 328.9 439 48.7
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.5e-86 323.9 434 49.5
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 2.0e-86 323.6 429 50.8
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 2.5e-84 316.6 435 48.7
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 2.0e-70 270.4 349 48.7
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 2.0e-70 270.4 439 43.3
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 6.3e-64 248.8 445 39.3
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.6e-62 244.2 501 36.7
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 3.5e-62 243.0 528 35.0
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 7.7e-62 241.9 514 36.2
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.7e-61 240.7 501 36.5
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.7e-61 240.7 531 34.7
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.7e-61 240.7 528 34.8
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 6.5e-61 238.8 494 36.6
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.9e-60 237.3 532 34.8
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 3.2e-60 236.5 531 34.5
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 9.5e-60 235.0 524 36.1
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.2e-59 234.6 488 35.0
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 3.6e-59 233.0 533 34.5
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 4.7e-59 232.6 520 35.0
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.3e-58 230.3 522 35.1
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 4.0e-58 229.6 502 35.9
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 5.2e-58 229.2 502 36.1
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 5.2e-58 229.2 502 35.5
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 4.4e-57 226.1 530 34.7
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 5.7e-57 225.7 453 37.1
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.3e-56 224.6 503 35.4
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 2.2e-56 223.8 522 35.2
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 3.7e-56 223.0 499 35.1
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 3.7e-56 223.0 462 35.1
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 2.4e-55 220.3 509 34.6
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 3.1e-55 219.9 536 34.9
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 5.4e-55 219.2 519 33.9
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 2.0e-54 217.2 525 33.1
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.0e-54 217.2 533 33.4
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 4.5e-54 216.1 432 36.6
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.0e-53 214.9 533 33.4
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.3e-53 214.5 531 33.5
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.3e-53 214.5 439 36.9
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.7e-53 214.2 534 33.0
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 2.3e-53 213.8 534 33.1
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 3.8e-53 213.0 497 34.0
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 5.0e-53 212.6 529 33.3
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.0e-53 212.6 432 36.3
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 1.9e-52 210.7 540 33.3
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.9e-52 210.7 539 32.7
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 4.3e-52 209.5 536 33.6
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 4.3e-52 209.5 536 33.4
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 5.6e-52 209.1 532 33.8
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 5.6e-52 209.1 494 34.0
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 9.5e-52 208.4 466 35.6
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.2e-51 208.0 532 32.9
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 2.1e-51 207.2 511 34.2
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 2.1e-51 207.2 519 32.8
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 2.1e-51 207.2 527 33.6
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 3.6e-51 206.5 488 34.6
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 6.1e-51 205.7 460 33.9
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 8.0e-51 205.3 539 33.4
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 8.0e-51 205.3 458 34.9
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 1.4e-50 204.5 567 32.1
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 1.4e-50 204.5 533 33.2
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 3.0e-50 203.4 492 33.3
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.2e-49 201.4 532 32.9
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 1.2e-49 201.4 513 32.7
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 2.0e-49 200.7 478 34.7
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 2.6e-49 200.3 557 32.1
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 2.6e-49 200.3 517 32.5
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 2.6e-49 200.3 525 33.7
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 5.7e-49 199.1 513 32.4
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 9.8e-49 198.4 515 32.6
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 1.3e-48 198.0 513 33.5
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 2.9e-48 196.8 544 32.0
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 6.4e-48 195.7 510 32.2
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 8.3e-48 195.3 460 35.2
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 8.3e-48 195.3 485 32.8
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.4e-47 194.5 513 32.6
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 4.1e-47 193.0 534 31.6
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 5.4e-47 192.6 510 32.2
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 7.0e-47 192.2 434 35.3
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 7.8e-46 188.7 431 35.0
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 3.0e-45 186.8 511 31.9
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 1.1e-44 184.9 489 33.1
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.5e-44 183.7 535 29.9
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.2e-43 181.4 531 31.1
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 2.8e-43 180.3 548 31.4
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.8e-42 177.6 532 30.3
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 7.5e-41 172.2 464 32.8
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 9.8e-41 171.8 357 33.6
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 9.8e-41 171.8 527 30.9
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 7.0e-39 165.6 486 30.9
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.0e-39 165.6 449 32.1
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 1.2e-38 164.9 486 31.5
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 1.2e-38 164.9 528 31.6
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 6.0e-38 162.5 440 31.6
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-36 158.3 453 32.7
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.5e-36 157.9 519 29.5
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 4.3e-36 156.4 418 33.7
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 3.1e-34 150.2 401 32.2
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 3.4e-33 146.7 548 29.9
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.4e-31 141.4 348 33.9
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.6e-29 132.1 190 40.5
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 2.8e-27 127.1 485 28.0
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 4.7e-27 126.3 194 41.2
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.3e-26 124.0 292 32.2
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 3.8e-24 116.7 236 39.4
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.9e-20 104.4 162 39.5
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.1e-18 97.1 163 39.9
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 3.8e-16 90.1 97 46.4
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 3.3e-12 77.0 61 62.3
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 1.5e-09 68.2 125 43.2
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 6.4e-08 62.8 64 57.8
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 8.4e-08 62.4 115 33.9
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 7.9e-06 55.8 173 29.5


User provided reference genes

Program Settings