Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05855 Brassica carinata HOM05D002581 ORTHO05D040016 4.8e-41 170.6 81 100.0
C08p03240 Brassica napus HOM05D013348 ORTHO05D042242 1.9e-29 132.1 64 98.4
C03p21730 Brassica napus HOM05D013348 ORTHO05D040016 1.2e-28 129.4 62 98.4
C03p78570 Brassica napus HOM05D000177 ORTHO05D003091 3.3e-21 104.8 53 94.3
BolC3t20108H Brassica oleracea HOM05D000177 ORTHO05D003091 3.3e-21 104.8 53 94.3
BcaC09g51297 Brassica carinata HOM05D002581 ORTHO05D002828 1.0e-14 83.2 89 53.9
A01p12290 Brassica napus HOM05D002581 ORTHO05D002828 1.0e-14 83.2 89 53.9
C01p14700 Brassica napus HOM05D002581 ORTHO05D002828 1.0e-14 83.2 89 53.9
BolC1t01422H Brassica oleracea HOM05D002581 ORTHO05D002828 1.0e-14 83.2 89 53.9
BraA01t01173Z Brassica rapa HOM05D002581 ORTHO05D002828 1.0e-14 83.2 89 53.9
Sp7g18960 Schrenkiella parvula HOM05D002581 ORTHO05D002828 1.3e-14 82.8 89 52.8
BcaNung04142 Brassica carinata HOM05D002581 ORTHO05D002828 2.3e-14 82.0 89 52.8
AL7G33280 Arabidopsis lyrata HOM05D002581 ORTHO05D002828 5.0e-14 80.9 89 52.8
AT4G20870 Arabidopsis thaliana HOM05D002581 ORTHO05D002828 5.0e-14 80.9 89 52.8
Carub.0007s2056 Capsella rubella HOM05D002581 ORTHO05D002828 5.0e-14 80.9 89 52.8
Thhalv10026120m.g Eutrema salsugineum HOM05D002581 ORTHO05D002828 1.1e-13 79.7 89 50.6
CARHR227420 Cardamine hirsuta HOM05D002581 ORTHO05D002828 7.3e-13 77.0 89 49.4
Aa31LG6G2940 Aethionema arabicum HOM05D002581 ORTHO05D002828 1.8e-11 72.4 89 43.8
THA.LOC104812935 Tarenaya hassleriana HOM05D002581 ORTHO05D002828 7.5e-10 67.0 89 46.1
Peaxi162Scf00395g00062 Petunia axillaris HOM05D002581 ORTHO05D002828 8.3e-09 63.5 89 38.2
CAN.G79.15 Capsicum annuum HOM05D002581 ORTHO05D002828 1.1e-08 63.2 89 40.4
Solyc02g070050.3 Solanum lycopersicum HOM05D002581 ORTHO05D002828 2.4e-08 62.0 89 38.2
Sopen02g019210 Solanum pennellii HOM05D002581 ORTHO05D002828 2.4e-08 62.0 89 38.2
FvH4_3g10780 Fragaria vesca HOM05D002581 ORTHO05D002828 3.2e-08 61.6 89 40.4
FAN11G0190 Fragaria x ananassa HOM05D002581 ORTHO05D002828 3.2e-08 61.6 89 40.4
FAN25G1534 Fragaria x ananassa HOM05D002581 ORTHO05D002828 3.2e-08 61.6 89 40.4
FAN25G3733 Fragaria x ananassa HOM05D002581 ORTHO05D002828 3.2e-08 61.6 89 40.4
C07p29060 Brassica napus HOM05D001366 ORTHO05D008529 4.1e-08 61.2 31 93.5
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 4.1e-08 61.2 31 93.5
CSS0033854 Camellia sinensis var. sinensis HOM05D002581 ORTHO05D002828 5.4e-08 60.8 89 38.2
Rhsim02G0164200 Rhododendron simsii HOM05D002581 ORTHO05D002828 9.2e-08 60.1 89 39.3
RcHm_v2.0_Chr5g0017501 Rosa chinensis HOM05D002581 ORTHO05D002828 9.2e-08 60.1 89 39.3
Ciclev10016492m.g Citrus clementina HOM05D002581 ORTHO05D002828 1.2e-07 59.7 89 37.1
MD10G1247600 Malus domestica HOM05D002581 ORTHO05D002828 1.2e-07 59.7 89 39.3
PGSC0003DMG400021113 Solanum tuberosum HOM05D002581 ORTHO05D002828 1.2e-07 59.7 92 35.9
AUR62040887 Chenopodium quinoa HOM05D002581 ORTHO05D002828 2.1e-07 58.9 89 36.0
Nitab4.5_0001583g0190 Nicotiana tabacum HOM05D002581 ORTHO05D002828 2.1e-07 58.9 89 38.2
Cpa.g.sc166.40 Carica papaya HOM05D002581 ORTHO05D002828 2.7e-07 58.5 89 38.2
FAN21G3636 Fragaria x ananassa HOM05D002581 ORTHO05D002828 2.7e-07 58.5 89 39.3
Aqoxy1G01486 Aquilegia oxysepala HOM05D002581 ORTHO05D002828 3.5e-07 58.2 89 36.0
Nitab4.5_0000076g0200 Nicotiana tabacum HOM05D002581 ORTHO05D002828 4.6e-07 57.8 89 36.0
Nitab4.5_0002094g0040 Nicotiana tabacum HOM05D002581 ORTHO05D002828 4.6e-07 57.8 89 36.0
Sabra11G0141600 Salix brachista HOM05D002581 ORTHO05D002828 4.6e-07 57.8 89 39.3
CANSAT35G1801 Cannabis sativa HOM05D002581 ORTHO05D002828 6.0e-07 57.4 89 38.2
PGR042G0555 Punica granatum HOM05D002581 ORTHO05D002828 7.8e-07 57.0 89 37.1
Atru.chr10.772 Acer truncatum HOM05D002581 ORTHO05D002828 1.0e-06 56.6 89 36.0
CiPaw.09G142900 Carya illinoinensis HOM05D002581 ORTHO05D002828 1.0e-06 56.6 89 34.8
MD05G1268900 Malus domestica HOM05D002581 ORTHO05D002828 1.0e-06 56.6 89 36.0
PGSC0003DMG400007596 Solanum tuberosum HOM05D002581 ORTHO05D002828 1.0e-06 56.6 45 51.1
Thecc.06G015300 Theobroma cacao HOM05D002581 ORTHO05D002828 1.0e-06 56.6 89 36.0
Eucgr.D01613 Eucalyptus grandis HOM05D002581 ORTHO05D002828 1.3e-06 56.2 107 34.6
AUR62026901 Chenopodium quinoa HOM05D002581 ORTHO05D002828 1.7e-06 55.8 89 34.8
Dinv14841 Davidia involucrata HOM05D002581 ORTHO05D002828 1.7e-06 55.8 89 34.8
Duzib160G0072 Durio zibethinus HOM05D002581 ORTHO05D002828 1.7e-06 55.8 89 34.8
Gohir.D02G107000 Gossypium hirsutum HOM05D002581 ORTHO05D002828 1.7e-06 55.8 89 34.8
Gorai.005G121600 Gossypium raimondii HOM05D002581 ORTHO05D002828 1.7e-06 55.8 89 34.8
Ah.14g086110 Amaranthus hybridus HOM05D002581 ORTHO05D002828 2.3e-06 55.5 89 37.1
Duzib235G0776 Durio zibethinus HOM05D002581 ORTHO05D002828 2.3e-06 55.5 89 34.8
Manes.06G058800 Manihot esculenta HOM05D002581 ORTHO05D002828 2.3e-06 55.5 89 36.0
Sed0010845 Sechium edule HOM05D002581 ORTHO05D002828 2.3e-06 55.5 89 37.1
TAR716G0001 Trochodendron aralioides HOM05D002581 ORTHO05D002828 2.3e-06 55.5 89 36.0
Haze_05899 Corylus avellana HOM05D002581 ORTHO05D002828 3.0e-06 55.1 45 51.1
Gohir.A02G089900 Gossypium hirsutum HOM05D002581 ORTHO05D002828 3.0e-06 55.1 89 34.8
RcHm_v2.0_Chr5g0017481 Rosa chinensis HOM05D002581 ORTHO05D002828 3.0e-06 55.1 45 53.3
arahy.Tifrunner.gnm1.ann1.407LUN Arachis hypogaea HOM05D002581 ORTHO05D002828 3.9e-06 54.7 89 36.0
arahy.Tifrunner.gnm1.ann1.8UG7AL Arachis hypogaea HOM05D002581 ORTHO05D002828 3.9e-06 54.7 89 36.0
Nitab4.5_0001225g0230 Nicotiana tabacum HOM05D002581 ORTHO05D002828 3.9e-06 54.7 89 36.0
Rhsim13G0122900 Rhododendron simsii HOM05D002581 ORTHO05D002828 3.9e-06 54.7 89 37.1
MBI18_g10014_MAGBIO Magnolia biondii HOM05D002581 ORTHO05D002828 5.1e-06 54.3 89 34.8
EL10Ac8g19556 Beta vulgaris HOM05D002581 ORTHO05D002828 6.6e-06 53.9 45 55.6
Lalb_Chr20g0120161 Lupinus albus HOM05D002581 ORTHO05D002828 6.6e-06 53.9 89 34.8
Manes.14G124800 Manihot esculenta HOM05D002581 ORTHO05D002828 8.6e-06 53.5 89 34.8
Prupe.4G095700 Prunus persica HOM05D002581 ORTHO05D002828 8.6e-06 53.5 89 37.1
Sabra16G0313500 Salix brachista HOM05D002581 ORTHO05D002828 8.6e-06 53.5 89 36.0
Sc24g0002510 Simmondsia chinensis HOM05D002581 ORTHO05D002828 8.6e-06 53.5 89 33.7
TAR627G0943 Trochodendron aralioides HOM05D002581 ORTHO05D002828 8.6e-06 53.5 45 51.1


User provided reference genes

Program Settings