Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 4.1e-130 468.0 225 100.0
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 1.2e-129 466.5 225 99.6
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 5.9e-129 464.2 225 98.7
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 6.5e-128 460.7 225 98.2
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 2.5e-127 458.8 225 97.8
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 3.5e-121 438.3 225 93.3
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 4.5e-121 438.0 225 92.9
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 4.5e-121 438.0 225 92.9
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 2.2e-120 435.6 225 92.4
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 2.2e-120 435.6 225 92.9
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 2.2e-120 435.6 225 92.4
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 3.8e-120 434.9 226 92.5
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 3.8e-120 434.9 226 92.5
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 5.0e-120 434.5 225 92.4
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.1e-119 433.3 226 92.5
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 5.5e-119 431.0 225 91.6
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 9.4e-119 430.3 225 90.7
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 2.2e-115 419.1 226 89.4
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 4.9e-107 391.3 224 82.1
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 1.2e-102 376.7 218 79.4
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 4.7e-102 374.8 218 79.4
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 1.0e-101 373.6 218 78.9
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 5.2e-101 371.3 217 78.3
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 8.9e-101 370.5 217 77.0
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 1.2e-100 370.2 225 75.6
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 9.8e-100 367.1 221 76.0
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 2.9e-99 365.5 222 74.8
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 6.4e-99 364.4 225 74.2
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 2.4e-98 362.5 225 74.2
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 3.2e-98 362.1 225 73.8
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 7.0e-98 360.9 217 76.0
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 7.0e-98 360.9 222 74.3
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 2.0e-97 359.4 217 74.7
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 2.7e-97 359.0 217 74.7
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 2.7e-97 359.0 217 76.0
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 1.7e-96 356.3 217 75.1
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 8.6e-96 354.0 220 72.7
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 1.9e-95 352.8 217 74.2
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 1.9e-95 352.8 220 72.7
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 2.5e-95 352.4 217 74.2
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 4.3e-95 351.7 221 73.3
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 4.3e-95 351.7 215 75.3
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 5.6e-95 351.3 228 71.5
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 7.3e-95 350.9 215 73.5
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 7.3e-95 350.9 217 72.8
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.6e-94 349.7 217 72.4
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 1.6e-94 349.7 217 73.3
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 2.1e-94 349.4 225 71.6
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 3.6e-94 348.6 217 71.9
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 4.7e-94 348.2 224 71.0
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 6.2e-94 347.8 217 72.8
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 8.0e-94 347.4 217 73.3
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 1.0e-93 347.1 221 71.9
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 1.8e-93 346.3 224 70.5
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 2.3e-93 345.9 221 71.9
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 3.1e-93 345.5 215 74.0
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 4.0e-93 345.1 224 71.4
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 5.2e-93 344.7 228 71.1
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 8.9e-93 344.0 217 72.4
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 1.2e-92 343.6 225 69.3
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 2.6e-92 342.4 217 71.0
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 4.4e-92 341.7 217 72.8
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 5.8e-92 341.3 230 69.6
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 5.8e-92 341.3 221 69.2
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 9.8e-92 340.5 221 69.7
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 9.8e-92 340.5 221 68.8
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 2.2e-91 339.3 214 72.9
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 2.9e-91 339.0 217 70.5
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 4.9e-91 338.2 221 68.3
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 6.4e-91 337.8 216 71.3
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 6.4e-91 337.8 222 69.8
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 8.3e-91 337.4 255 64.7
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 1.1e-90 337.0 217 70.0
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 1.9e-90 336.3 215 70.7
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 1.9e-90 336.3 217 70.5
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 3.2e-90 335.5 225 68.0
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 5.4e-90 334.7 220 70.5
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 7.0e-90 334.3 219 68.5
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 1.2e-89 333.6 222 68.0
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 2.7e-89 332.4 229 69.4
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 6.0e-89 331.3 225 66.2
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 1.3e-88 330.1 221 67.9
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 1.3e-88 330.1 214 71.5
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 3.0e-88 328.9 221 67.0
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 3.0e-88 328.9 217 67.3
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 3.0e-88 328.9 220 68.6
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 3.9e-88 328.6 215 67.9
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 5.0e-88 328.2 219 69.4
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 6.6e-88 327.8 217 69.1
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 7.3e-87 324.3 217 67.3
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 1.2e-86 323.6 214 68.7
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 2.8e-86 322.4 269 61.3
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 3.1e-85 318.9 217 66.4
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 2.6e-84 315.8 206 70.4
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 4.4e-84 315.1 195 72.8
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 2.2e-83 312.8 228 64.9
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 3.7e-83 312.0 311 50.8
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 5.6e-79 298.1 199 69.3
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 2.3e-77 292.7 206 67.0
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 1.2e-76 290.4 174 75.9
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 7.6e-76 287.7 167 77.2
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 6.6e-72 274.6 165 73.9
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 5.6e-71 271.6 215 61.9
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 6.4e-67 258.1 225 56.4
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 4.3e-63 245.4 226 55.8
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 3.8e-59 232.3 217 52.1
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 2.4e-53 213.0 141 69.5
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 6.9e-53 211.5 166 61.4
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 5.6e-47 191.8 215 47.0
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 2.6e-44 183.0 124 67.7
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 1.0e-43 181.0 101 78.2
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 5.1e-40 168.7 99 76.8
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 4.8e-38 162.2 211 44.1
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 5.0e-35 152.1 213 40.4
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.6e-33 147.1 95 74.7
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.6e-33 147.1 95 74.7
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 2.7e-33 146.4 210 41.0
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 1.9e-31 140.2 87 71.3
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 3.3e-31 139.4 84 77.4
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 3.1e-29 132.9 119 57.1
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 3.1e-29 132.9 119 57.1
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 5.3e-29 132.1 105 61.0
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 1.1e-26 124.4 96 64.6
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.4e-24 117.5 79 70.9
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 8.2e-22 108.2 84 63.1
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.2e-20 104.4 60 73.3
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 2.9e-19 99.8 79 64.6
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 5.0e-19 99.0 213 31.5
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 2.5e-18 96.7 49 98.0
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 3.0e-16 89.7 196 32.1
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 1.7e-14 84.0 48 77.1
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 8.2e-14 81.6 186 31.7
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 2.0e-12 77.0 55 61.8


User provided reference genes

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