Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 4.0e-40 167.9 103 100.0
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 7.0e-37 157.1 98 99.0
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 7.0e-37 157.1 98 99.0
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 1.1e-29 133.3 98 86.7
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 9.2e-29 130.2 98 85.7
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 1.6e-25 119.4 104 63.5
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 2.8e-25 118.6 99 65.7
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 1.1e-24 116.7 99 64.6
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 1.4e-24 116.3 100 64.0
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 4.0e-24 114.8 99 64.6
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 9.9e-23 110.2 103 75.7
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 1.7e-22 109.4 107 64.5
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 4.9e-22 107.8 102 57.8
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 8.4e-22 107.1 98 73.5
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 1.4e-21 106.3 99 60.6
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 4.2e-21 104.8 104 64.4
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 4.2e-21 104.8 104 64.4
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 9.2e-21 103.6 105 64.8
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 1.6e-20 102.8 104 63.5
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 2.1e-20 102.4 102 73.5
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 2.1e-20 102.4 102 73.5
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 2.1e-20 102.4 102 73.5
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 3.5e-20 101.7 98 72.4
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 4.6e-20 101.3 100 60.0
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 1.4e-16 89.7 77 74.0
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 1.4e-16 89.7 77 74.0
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 1.4e-16 89.7 77 74.0
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 2.6e-15 85.5 99 46.5
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.9e-14 82.0 93 44.1
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 3.8e-14 81.6 98 41.8
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 4.9e-14 81.3 53 66.0
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 8.4e-14 80.5 53 67.9
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 2.4e-13 79.0 99 45.5
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 3.2e-13 78.6 54 70.4
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 9.3e-13 77.0 53 64.2
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 9.3e-13 77.0 53 62.3
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 1.2e-12 76.6 97 44.3
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 2.7e-12 75.5 53 60.4
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 2.7e-12 75.5 99 42.4
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 3.5e-12 75.1 53 62.3
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 6.0e-12 74.3 52 61.5
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 7.8e-12 73.9 54 64.8
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.8e-12 73.9 94 42.6
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 7.8e-12 73.9 100 43.0
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 7.8e-12 73.9 94 40.4
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 1.0e-11 73.6 53 56.6
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 1.3e-11 73.2 53 60.4
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 2.3e-11 72.4 53 62.3
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 3.0e-11 72.0 53 60.4
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 3.0e-11 72.0 53 58.5
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 3.9e-11 71.6 99 39.4
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 3.9e-11 71.6 53 60.4
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.1e-11 71.2 99 38.4
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.1e-11 71.2 99 38.4
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 8.7e-11 70.5 53 56.6
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 8.7e-11 70.5 98 38.8
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 8.7e-11 70.5 53 58.5
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 8.7e-11 70.5 53 58.5
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 8.7e-11 70.5 53 58.5
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 8.7e-11 70.5 92 39.1
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 1.5e-10 69.7 53 56.6
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 1.5e-10 69.7 53 60.4
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 1.5e-10 69.7 53 60.4
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.5e-10 68.9 94 40.4
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 3.3e-10 68.6 53 58.5
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 4.3e-10 68.2 51 60.8
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 4.3e-10 68.2 53 56.6
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 4.3e-10 68.2 54 57.4
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 4.3e-10 68.2 54 57.4
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 7.3e-10 67.4 53 52.8
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 7.3e-10 67.4 52 59.6
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 7.3e-10 67.4 53 52.8
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 1.3e-09 66.6 98 37.8
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 1.6e-09 66.2 52 55.8
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 1.6e-09 66.2 53 52.8
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 2.1e-09 65.9 54 59.3
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 3.6e-09 65.1 53 60.4
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 4.8e-09 64.7 53 50.9
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 4.8e-09 64.7 54 53.7
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 6.2e-09 64.3 57 59.6
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 6.2e-09 64.3 53 50.9
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 1.1e-08 63.5 53 54.7
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 1.4e-08 63.2 57 57.9
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 1.8e-08 62.8 99 37.4
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 3.1e-08 62.0 53 50.9
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 5.3e-08 61.2 53 45.3
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.9e-08 60.8 44 63.6
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 9.0e-08 60.5 51 51.0
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.2e-07 60.1 54 55.6
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.2e-07 60.1 54 55.6
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.2e-07 60.1 54 55.6
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 1.5e-07 59.7 76 43.4
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 2.0e-07 59.3 57 54.4
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 3.4e-07 58.5 53 47.2
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 3.4e-07 58.5 53 49.1
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 3.4e-07 58.5 54 55.6
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 3.4e-07 58.5 53 50.9
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 4.5e-07 58.2 53 52.8
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 5.8e-07 57.8 40 62.5
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 7.6e-07 57.4 55 54.5
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 7.6e-07 57.4 56 51.8
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 7.6e-07 57.4 56 53.6
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 1.7e-06 56.2 92 34.8
unitig_26.g9548 Utricularia gibba HOM05D005475 ORTHO05D006575 2.2e-06 55.8 45 53.3
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 6.4e-06 54.3 53 50.9
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 6.4e-06 54.3 55 50.9
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 8.4e-06 53.9 53 49.1
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 8.4e-06 53.9 53 49.1


User provided reference genes

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