Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 1.1e-124 449.9 219 100.0
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 8.9e-122 440.3 219 97.7
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 3.4e-113 411.8 204 97.1
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.1e-111 406.8 219 90.0
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 2.4e-111 405.6 219 89.5
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 9.2e-111 403.7 219 89.0
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 3.5e-110 401.7 220 88.6
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 4.6e-110 401.4 219 90.4
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.0e-109 400.2 219 88.1
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.0e-109 400.2 219 88.1
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.0e-109 400.2 219 88.1
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 5.6e-108 394.4 219 88.1
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 2.0e-97 359.4 215 80.5
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.7e-93 346.3 214 77.1
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 8.6e-93 344.0 216 78.2
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 3.0e-85 318.9 219 70.3
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.6e-83 313.2 213 69.5
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 8.7e-77 290.8 185 76.8
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 8.4e-72 274.2 216 59.7
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 1.4e-71 273.5 234 58.1
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 2.4e-71 272.7 230 57.0
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 2.4e-71 272.7 230 57.0
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 2.4e-71 272.7 223 59.6
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 5.5e-71 271.6 213 60.6
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 7.1e-71 271.2 221 61.1
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 7.1e-71 271.2 216 59.7
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 7.1e-71 271.2 213 60.1
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 9.3e-71 270.8 222 59.9
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 1.2e-70 270.4 212 60.8
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.6e-70 270.0 203 63.1
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 3.5e-70 268.9 213 59.2
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 4.6e-70 268.5 203 63.1
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 4.6e-70 268.5 203 64.0
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 6.0e-70 268.1 229 56.8
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 6.0e-70 268.1 203 63.5
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.0e-69 267.3 212 60.4
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.3e-69 266.9 211 60.2
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.3e-69 266.9 213 59.6
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.3e-69 266.9 203 63.1
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 1.8e-69 266.5 213 59.6
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.8e-69 266.5 210 61.0
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.8e-69 266.5 210 61.0
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.3e-69 266.2 210 61.0
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 2.3e-69 266.2 206 61.2
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 3.0e-69 265.8 229 57.2
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 3.9e-69 265.4 199 63.3
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 5.1e-69 265.0 210 59.0
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 6.7e-69 264.6 218 56.9
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 6.7e-69 264.6 203 62.1
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 6.7e-69 264.6 226 58.0
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 6.7e-69 264.6 214 59.3
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 8.7e-69 264.2 215 58.6
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 8.7e-69 264.2 234 54.7
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.1e-68 263.8 213 59.2
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 1.1e-68 263.8 213 60.1
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 1.1e-68 263.8 203 61.1
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.5e-68 263.5 203 60.6
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.9e-68 263.1 213 59.2
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 2.5e-68 262.7 216 57.9
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 2.5e-68 262.7 223 57.8
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 4.3e-68 261.9 219 57.1
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.6e-68 261.5 236 53.0
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 5.6e-68 261.5 204 63.2
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 7.4e-68 261.2 213 56.3
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 7.4e-68 261.2 208 60.1
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 9.6e-68 260.8 233 53.6
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 1.3e-67 260.4 229 55.5
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.3e-67 260.4 204 61.8
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.1e-67 259.6 211 60.2
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.1e-67 259.6 218 56.4
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 2.8e-67 259.2 216 56.9
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 2.8e-67 259.2 228 55.7
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 3.7e-67 258.8 211 58.8
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 3.7e-67 258.8 220 58.2
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 1.1e-66 257.3 213 55.4
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 1.4e-66 256.9 214 58.4
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.4e-66 256.9 210 58.6
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.8e-66 256.5 210 58.6
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.4e-66 256.1 212 56.1
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 4.0e-66 255.4 211 57.3
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 5.3e-66 255.0 222 58.6
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 6.9e-66 254.6 213 58.2
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.2e-65 253.8 213 56.8
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 1.2e-65 253.8 220 57.3
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 1.5e-65 253.4 200 59.5
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.5e-65 253.4 201 60.2
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 2.0e-65 253.1 212 58.5
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 2.6e-65 252.7 213 56.3
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 2.6e-65 252.7 213 56.3
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.5e-65 251.9 203 59.6
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.5e-65 251.9 203 59.6
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 7.6e-65 251.1 203 58.1
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 7.6e-65 251.1 225 56.0
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.0e-64 250.8 202 60.9
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 1.0e-64 250.8 210 56.7
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 1.3e-64 250.4 213 56.8
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.7e-64 250.0 212 58.0
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 1.7e-64 250.0 203 57.1
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 2.2e-64 249.6 228 53.9
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.9e-64 249.2 211 57.8
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.5e-64 248.1 195 59.0
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 7.1e-63 244.6 224 55.4
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 6.0e-62 241.5 213 55.4
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.8e-61 240.0 227 50.2
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 2.5e-60 236.1 211 55.5
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 4.3e-60 235.3 176 61.9
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 8.2e-59 231.1 203 52.2
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.4e-58 230.3 204 53.4
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 9.0e-58 227.6 204 52.9
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 4.5e-57 225.3 183 60.7
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 5.0e-56 221.9 242 47.9
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 2.5e-55 219.5 213 51.2
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 3.0e-53 212.6 219 46.6
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 4.3e-52 208.8 212 45.3
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 3.1e-50 202.6 234 47.0
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 9.1e-50 201.1 225 48.0
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.2e-46 190.7 146 63.7
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 3.0e-45 186.0 206 46.6
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 3.7e-43 179.1 203 44.8
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 7.7e-41 171.4 150 53.3
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.2e-40 169.9 151 53.6
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 6.1e-38 161.8 215 40.5
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 1.4e-37 160.6 201 43.3
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.8e-37 160.2 181 47.5
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 6.1e-30 135.2 236 36.9
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 1.0e-29 134.4 116 56.9
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 3.0e-29 132.9 236 36.9
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 3.6e-22 109.4 179 37.4
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 6.1e-22 108.6 115 50.4
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 1.1e-15 87.8 155 31.0
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 1.5e-15 87.4 87 44.8
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 3.4e-12 76.3 59 54.2
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 8.3e-11 71.6 51 58.8
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 5.4e-10 68.9 43 65.1
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 2.5e-07 60.1 49 59.2


User provided reference genes

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