Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05833 Brassica carinata HOM05D006709 ORTHO05D008329 1.2e-36 156.0 77 100.0
BcaC01g05832 Brassica carinata HOM05D006709 ORTHO05D008329 5.5e-34 147.1 89 86.5
C03p21970 Brassica napus HOM05D006709 ORTHO05D008329 5.5e-34 147.1 89 86.5
BolC3t14580H Brassica oleracea HOM05D006709 ORTHO05D008329 5.5e-34 147.1 89 86.5
BraA03t11140Z Brassica rapa HOM05D006709 ORTHO05D008329 5.5e-34 147.1 89 86.5
A03p18800 Brassica napus HOM05D006709 ORTHO05D008329 1.2e-33 146.0 89 85.4
BcaB01g03928 Brassica carinata HOM05D006709 ORTHO05D008329 1.3e-32 142.5 89 84.3
BcaB06g28702 Brassica carinata HOM05D006709 ORTHO05D008329 1.4e-29 132.5 90 80.0
C04p63090 Brassica napus HOM05D006709 ORTHO05D008329 1.8e-29 132.1 90 78.9
A04p25850 Brassica napus HOM05D006709 ORTHO05D008329 4.0e-29 131.0 90 77.8
BraA04t18087Z Brassica rapa HOM05D006709 ORTHO05D008329 4.0e-29 131.0 90 77.8
CARHR127610 Cardamine hirsuta HOM05D006709 ORTHO05D008329 6.9e-29 130.2 89 75.3
BolC4t27784H Brassica oleracea HOM05D006709 ORTHO05D008329 1.2e-28 129.4 90 77.8
AL4G29260 Arabidopsis lyrata HOM05D006709 ORTHO05D008329 1.5e-28 129.0 89 73.0
BcaC02g07804 Brassica carinata HOM05D006709 ORTHO05D008329 2.6e-28 128.3 90 76.7
Thhalv10017474m.g Eutrema salsugineum HOM05D006709 ORTHO05D008329 2.6e-28 128.3 89 74.2
AT2G33585 Arabidopsis thaliana HOM05D006709 ORTHO05D008329 5.8e-28 127.1 89 71.9
Carub.0004s1522 Capsella rubella HOM05D006709 ORTHO05D008329 7.6e-28 126.7 90 71.1
Aa31LG9G13520 Aethionema arabicum HOM05D006709 ORTHO05D008329 1.1e-26 122.9 89 67.4
Cpa.g.sc26.6 Carica papaya HOM05D006709 ORTHO05D008329 3.5e-25 117.9 89 66.3
Actinidia17082 Actinidia chinensis HOM05D006709 ORTHO05D008329 1.0e-24 116.3 90 65.6
Manes.18G001600 Manihot esculenta HOM05D006709 ORTHO05D008329 1.3e-24 115.9 89 66.3
Prupe.1G298300 Prunus persica HOM05D006709 ORTHO05D008329 1.3e-24 115.9 89 66.3
vmacro21761 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 1.3e-24 115.9 90 64.4
Ciclev10002952m.g Citrus clementina HOM05D006709 ORTHO05D008329 3.0e-24 114.8 89 65.2
GSVIVG01013436001 Vitis vinifera HOM05D006709 ORTHO05D008329 3.9e-24 114.4 90 63.3
Atru.chr13.44 Acer truncatum HOM05D006709 ORTHO05D008329 6.7e-24 113.6 87 64.4
Actinidia15528 Actinidia chinensis HOM05D006709 ORTHO05D008329 8.7e-24 113.2 90 64.4
CSS0027441 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 1.9e-23 112.1 86 66.3
MELO3C016084.2 Cucumis melo HOM05D006709 ORTHO05D008329 2.5e-23 111.7 88 63.6
Potri.005G257100 Populus trichocarpa HOM05D006709 ORTHO05D008329 2.5e-23 111.7 89 61.8
Dinv05492 Davidia involucrata HOM05D006709 ORTHO05D008329 5.7e-23 110.5 90 62.2
QL02p015873 Quercus lobata HOM05D006709 ORTHO05D008329 7.4e-23 110.2 90 61.1
CSS0014821 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 9.6e-23 109.8 86 65.1
ClCG07G009870 Citrullus lanatus HOM05D006709 ORTHO05D008329 9.6e-23 109.8 88 62.5
RcHm_v2.0_Chr7g0216881 Rosa chinensis HOM05D006709 ORTHO05D008329 9.6e-23 109.8 93 61.3
MD06G1003100 Malus domestica HOM05D006709 ORTHO05D008329 1.3e-22 109.4 85 65.9
Sed0015665 Sechium edule HOM05D006709 ORTHO05D008329 1.6e-22 109.0 88 62.5
Oeu035869.2 Olea europaea HOM05D006709 ORTHO05D008329 2.1e-22 108.6 86 64.0
CAN.G1330.15 Capsicum annuum HOM05D006709 ORTHO05D008329 2.8e-22 108.2 90 60.0
Haze_22867 Corylus avellana HOM05D006709 ORTHO05D008329 3.7e-22 107.8 88 61.4
FvH4_5g26200 Fragaria vesca HOM05D006709 ORTHO05D008329 4.8e-22 107.5 93 58.1
FAN08G1650 Fragaria x ananassa HOM05D006709 ORTHO05D008329 4.8e-22 107.5 93 58.1
FAN13G1766 Fragaria x ananassa HOM05D006709 ORTHO05D008329 4.8e-22 107.5 93 58.1
Gohir.A09G212700 Gossypium hirsutum HOM05D006709 ORTHO05D008329 4.8e-22 107.5 88 59.1
Gohir.D09G206300 Gossypium hirsutum HOM05D006709 ORTHO05D008329 4.8e-22 107.5 88 59.1
Gorai.006G230200 Gossypium raimondii HOM05D006709 ORTHO05D008329 4.8e-22 107.5 88 59.1
Thecc.08G099000 Theobroma cacao HOM05D006709 ORTHO05D008329 6.3e-22 107.1 88 60.2
FAN18G1826 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.1e-21 106.3 93 58.1
Solyc04g082800.3 Solanum lycopersicum HOM05D006709 ORTHO05D008329 1.1e-21 106.3 90 58.9
Sopen04g036440 Solanum pennellii HOM05D006709 ORTHO05D008329 1.1e-21 106.3 90 58.9
CANSAT78G0412 Cannabis sativa HOM05D006709 ORTHO05D008329 1.4e-21 105.9 88 59.1
Hma1.2p1_0489F.1_g164140 Hydrangea macrophylla HOM05D006709 ORTHO05D008329 1.4e-21 105.9 91 59.3
Sp4g15940 Schrenkiella parvula HOM05D006709 ORTHO05D008329 1.4e-21 105.9 75 73.3
Migut.C00352 Erythranthe guttata HOM05D006709 ORTHO05D008329 1.8e-21 105.5 87 62.1
Rhsim06G0002600 Rhododendron simsii HOM05D006709 ORTHO05D008329 2.4e-21 105.1 95 56.8
Duzib151G1059 Durio zibethinus HOM05D006709 ORTHO05D008329 3.1e-21 104.8 88 59.1
Peaxi162Scf00385g00310 Petunia axillaris HOM05D006709 ORTHO05D008329 3.1e-21 104.8 89 60.7
Nitab4.5_0007096g0020 Nicotiana tabacum HOM05D006709 ORTHO05D008329 5.3e-21 104.0 90 58.9
arahy.Tifrunner.gnm1.ann1.6A59KD Arachis hypogaea HOM05D006709 ORTHO05D008329 9.0e-21 103.2 87 60.9
PGSC0003DMG400009925 Solanum tuberosum HOM05D006709 ORTHO05D008329 9.0e-21 103.2 86 60.5
PGR031G3816 Punica granatum HOM05D006709 ORTHO05D008329 1.2e-20 102.8 79 65.8
Lalb_Chr03g0035821 Lupinus albus HOM05D006709 ORTHO05D008329 1.5e-20 102.4 87 60.9
Phvul.009G008700 Phaseolus vulgaris HOM05D006709 ORTHO05D008329 1.5e-20 102.4 93 61.3
Psat5g008400 Pisum sativum HOM05D006709 ORTHO05D008329 1.5e-20 102.4 91 58.2
MBI04_g31214_MAGBIO Magnolia biondii HOM05D006709 ORTHO05D008329 2.0e-20 102.1 90 56.7
Duzib212G0839 Durio zibethinus HOM05D006709 ORTHO05D008329 2.6e-20 101.7 88 58.0
Lalb_Chr04g0257801 Lupinus albus HOM05D006709 ORTHO05D008329 2.6e-20 101.7 88 59.1
Medtr3g116150 Medicago truncatula HOM05D006709 ORTHO05D008329 2.6e-20 101.7 86 59.3
SalBow7G4607 Salvia bowleyana HOM05D006709 ORTHO05D008329 2.6e-20 101.7 87 58.6
arahy.Tifrunner.gnm1.ann1.ZQQY3F Arachis hypogaea HOM05D006709 ORTHO05D008329 3.4e-20 101.3 87 59.8
Ca_15382_v3 Cicer arietinum L. HOM05D006709 ORTHO05D008329 3.4e-20 101.3 85 57.6
TPR.G38103 Trifolium pratense HOM05D006709 ORTHO05D008329 4.5e-20 100.9 92 57.6
Ah.11g042070 Amaranthus hybridus HOM05D006709 ORTHO05D008329 5.9e-20 100.5 84 63.1
Eucgr.F03607 Eucalyptus grandis HOM05D006709 ORTHO05D008329 5.9e-20 100.5 89 56.2
Glyma.04G014200 Glycine max HOM05D006709 ORTHO05D008329 7.6e-20 100.1 83 62.7
Hund05070 Selenicereus undatus HOM05D006709 ORTHO05D008329 7.6e-20 100.1 82 61.0
ATR0605G117 Amborella trichopoda HOM05D006709 ORTHO05D008329 1.7e-19 99.0 88 56.8
Lj4A4T20 Lonicera japonica HOM05D006709 ORTHO05D008329 1.7e-19 99.0 89 60.7
HPP92_015749 Vanilla planifolia HOM05D006709 ORTHO05D008329 2.2e-19 98.6 78 62.8
VMungo1309G2593 Vigna mungo HOM05D006709 ORTHO05D008329 2.2e-19 98.6 83 61.4
TWI56G0059 Tripterygium wilfordii HOM05D006709 ORTHO05D008329 2.9e-19 98.2 91 59.3
Os08g0512900 Oryza sativa ssp. japonica HOM05D006709 ORTHO05D008329 3.8e-19 97.8 90 57.8
PSO017G0586 Papaver somniferum HOM05D006709 ORTHO05D008329 3.8e-19 97.8 93 55.9
Cc10_g00210 Coffea canephora HOM05D006709 ORTHO05D008329 5.0e-19 97.4 87 58.6
COL.COLO4_12285 Corchorus olitorius HOM05D006709 ORTHO05D008329 5.0e-19 97.4 84 57.1
ECA233G3448 Erigeron canadensis HOM05D006709 ORTHO05D008329 6.5e-19 97.1 85 57.6
EL10Ac1g01866 Beta vulgaris HOM05D006709 ORTHO05D008329 8.5e-19 96.7 88 56.8
Glyma.06G014200 Glycine max HOM05D006709 ORTHO05D008329 8.5e-19 96.7 81 61.7
Lsat_1_v5_gn_8_26041 Lactuca sativa HOM05D006709 ORTHO05D008329 1.1e-18 96.3 90 55.6
Nn5g31057 Nelumbo nucifera HOM05D006709 ORTHO05D008329 1.1e-18 96.3 117 47.0
Sc15g0004050 Simmondsia chinensis HOM05D006709 ORTHO05D008329 1.1e-18 96.3 83 57.8
Lj1g0007500 Lotus japonicus HOM05D006709 ORTHO05D008329 1.4e-18 95.9 90 58.9
Lsat_1_v5_gn_9_48241 Lactuca sativa HOM05D006709 ORTHO05D008329 2.5e-18 95.1 82 58.5
SEGI_16420 Sequoiadendron giganteum HOM05D006709 ORTHO05D008329 3.2e-18 94.7 87 55.2
CDE05G2376 Ceratophyllum demersum HOM05D006709 ORTHO05D008329 5.5e-18 94.0 86 54.7
HanXRQChr12g0367591 Helianthus annuus HOM05D006709 ORTHO05D008329 7.2e-18 93.6 89 51.7
unitig_37.g13048 Utricularia gibba HOM05D006709 ORTHO05D008329 2.7e-17 91.7 83 57.8
Aqoxy5G00959 Aquilegia oxysepala HOM05D006709 ORTHO05D008329 4.6e-17 90.9 72 62.5
CiPaw.07G132800 Carya illinoinensis HOM05D006709 ORTHO05D008329 7.9e-17 90.1 78 59.0
Oeu035760.1 Olea europaea HOM05D006709 ORTHO05D008329 7.9e-17 90.1 95 50.5
Sabra05G0199000 Salix brachista HOM05D006709 ORTHO05D008329 5.1e-16 87.4 72 59.7
TAR628G1717 Trochodendron aralioides HOM05D006709 ORTHO05D008329 5.1e-16 87.4 73 60.3
Zm00001eb199960 Zea mays HOM05D006709 ORTHO05D008329 2.2e-14 82.0 73 57.5
FAN04G1417 Fragaria x ananassa HOM05D006709 ORTHO05D008329 4.1e-13 77.8 94 46.8
MSTRG.1007 Avicennia marina HOM05D006709 ORTHO05D008329 1.2e-12 76.3 70 58.6
Mapoly0015s0105 Marchantia polymorpha HOM05D006709 ORTHO05D008329 5.9e-12 73.9 88 45.5
CsaV3_4G008460 Cucumis sativus L. HOM05D006709 ORTHO05D008329 1.3e-11 72.8 62 59.7
AagrBONN_evm.TU.Sc2ySwM_344.3753 Anthoceros agrestis HOM05D006709 ORTHO05D008329 1.4e-10 69.3 79 45.6
vmacro04272 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 5.5e-10 67.4 105 41.0
DCAR_016802 Daucus carota HOM05D006709 ORTHO05D008329 2.3e-08 62.0 69 46.4
A05p11940 Brassica napus HOM05D006709 ORTHO05D097272 3.9e-08 61.2 32 84.4
Manes.05G128900 Manihot esculenta HOM05D006709 ORTHO05D008329 6.7e-08 60.5 36 75.0
SHI07946 Sapria himalayana HOM05D006709 ORTHO05D008329 6.7e-08 60.5 35 77.1


User provided reference genes

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