Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 5.7e-124 447.6 226 100.0
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 5.5e-119 431.0 219 99.5
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 1.2e-118 429.9 219 99.1
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 3.9e-112 408.3 219 93.6
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 1.1e-111 406.8 219 93.6
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 3.1e-101 372.1 225 83.6
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 3.9e-96 355.1 225 78.2
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 8.6e-96 354.0 226 80.5
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 2.5e-95 352.4 210 81.4
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 2.6e-92 342.4 210 78.6
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 1.3e-88 330.1 210 77.6
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 2.3e-88 329.3 210 76.2
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 2.4e-85 319.3 214 77.6
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 2.4e-85 319.3 214 77.6
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 5.8e-84 314.7 210 75.2
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 1.7e-80 303.1 210 71.0
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.3e-72 276.9 208 64.9
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 1.1e-71 273.9 208 63.9
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 1.5e-71 273.5 208 64.4
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 1.5e-71 273.5 208 62.0
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 1.9e-71 273.1 210 61.4
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 2.5e-71 272.7 206 65.0
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 3.3e-71 272.3 207 64.3
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 9.6e-71 270.8 206 63.6
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.6e-70 270.0 206 63.1
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.1e-70 269.6 210 62.9
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 2.8e-70 269.2 206 63.6
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 4.8e-70 268.5 205 63.9
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 6.9e-69 264.6 208 63.0
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 3.4e-68 262.3 215 59.1
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 4.5e-68 261.9 208 60.1
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 4.5e-68 261.9 208 60.1
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 5.8e-68 261.5 208 60.6
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 2.2e-67 259.6 207 58.9
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 3.8e-67 258.8 208 62.0
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 3.8e-67 258.8 215 57.2
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 3.8e-67 258.8 208 60.6
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 1.1e-66 257.3 210 57.6
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.4e-66 256.1 208 58.7
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 1.2e-65 253.8 210 60.5
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 1.2e-65 253.8 208 59.6
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 1.3e-64 250.4 210 56.7
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 1.3e-64 250.4 208 57.2
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 3.0e-64 249.2 210 56.7
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 5.1e-64 248.4 208 56.7
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 6.7e-64 248.1 212 56.1
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 8.7e-64 247.7 209 59.3
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 2.5e-63 246.1 208 56.7
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 3.3e-63 245.7 208 57.7
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 9.6e-63 244.2 210 57.6
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 6.2e-62 241.5 206 58.7
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 6.2e-62 241.5 186 63.4
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 8.1e-62 241.1 206 59.2
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 8.1e-62 241.1 206 59.2
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 1.8e-61 240.0 210 55.2
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 2.4e-61 239.6 207 57.0
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.4e-61 239.6 209 52.6
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 6.9e-61 238.0 207 54.6
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 9.0e-61 237.7 208 55.3
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 1.5e-60 236.9 208 51.9
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.5e-60 236.9 196 57.1
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 1.5e-60 236.9 215 54.4
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 2.6e-60 236.1 209 51.7
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 3.8e-59 232.3 210 53.3
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 4.9e-59 231.9 208 55.8
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 4.9e-59 231.9 209 50.7
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 4.9e-59 231.9 208 54.8
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 1.1e-58 230.7 208 53.4
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 2.5e-58 229.6 208 51.4
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 3.2e-58 229.2 217 52.1
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 3.2e-58 229.2 209 50.7
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 5.5e-58 228.4 209 53.1
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 7.1e-58 228.0 215 52.1
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 2.1e-57 226.5 215 51.2
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 2.7e-57 226.1 208 50.5
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 2.7e-57 226.1 215 50.7
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 3.5e-57 225.7 210 52.9
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 6.0e-57 224.9 210 52.4
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.3e-56 223.8 208 51.9
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 8.7e-56 221.1 208 50.0
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 1.1e-55 220.7 215 50.2
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 2.5e-55 219.5 211 47.9
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 3.3e-55 219.2 208 54.8
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 1.3e-54 217.2 195 55.9
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 1.8e-53 213.4 170 60.6
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 2.4e-53 213.0 195 54.4
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 1.7e-51 206.8 208 48.1
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 1.1e-50 204.1 184 59.2
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 4.8e-46 188.7 207 46.4
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 1.8e-45 186.8 208 42.3
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 4.5e-44 182.2 207 50.7
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 5.9e-44 181.8 208 43.8
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 5.5e-42 175.3 215 44.2
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 4.8e-38 162.2 141 53.9
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 9.1e-37 157.9 195 46.2
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 1.2e-36 157.5 152 52.6
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 6.5e-35 151.8 208 41.8
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 9.4e-34 147.9 210 47.1
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.4e-32 144.1 209 34.4
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 3.0e-32 142.9 115 60.0
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 5.7e-31 138.7 210 39.5
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 5.7e-31 138.7 123 55.3
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 5.9e-28 128.6 100 61.0
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 5.9e-28 128.6 219 36.1
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 8.5e-27 124.8 105 56.2
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 4.2e-26 122.5 207 33.3
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 4.2e-26 122.5 114 55.3
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 2.7e-25 119.8 213 34.7
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 3.6e-25 119.4 105 53.3
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 7.0e-21 105.1 114 46.5
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 2.9e-19 99.8 150 38.0
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 7.2e-18 95.1 175 31.4
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 8.0e-17 91.7 221 28.5
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 2.2e-14 83.6 94 50.0
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 8.8e-08 61.6 64 48.4


User provided reference genes

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