Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05779 Brassica carinata HOM05D000545 ORTHO05D000539 1.8e-40 168.7 80 100.0
AT2G34720 Arabidopsis thaliana HOM05D000545 ORTHO05D000539 3.6e-12 74.7 47 76.6
AL481U10030 Arabidopsis lyrata HOM05D000545 ORTHO05D000539 2.0e-10 68.9 43 76.7
Thhalv10017261m.g Eutrema salsugineum HOM05D000545 ORTHO05D000539 3.7e-09 64.7 36 77.8
Carub.0004s1641 Capsella rubella HOM05D000545 ORTHO05D000539 8.2e-09 63.5 34 79.4
CARHR128880 Cardamine hirsuta HOM05D000545 ORTHO05D000539 8.2e-09 63.5 34 79.4
Sp4g17000 Schrenkiella parvula HOM05D000545 ORTHO05D000539 8.2e-09 63.5 33 81.8
Aa31LG10G6610 Aethionema arabicum HOM05D000545 ORTHO05D000539 1.4e-08 62.8 51 60.8
AL4G30710 Arabidopsis lyrata HOM05D000545 ORTHO05D000539 1.8e-08 62.4 65 52.3
A05p10920 Brassica napus HOM05D000545 ORTHO05D000539 3.1e-08 61.6 33 78.8
BraA05t20036Z Brassica rapa HOM05D000545 ORTHO05D000539 3.1e-08 61.6 33 78.8
BcaC02g11550 Brassica carinata HOM05D000545 ORTHO05D000539 2.7e-07 58.5 32 75.0
C04p14020 Brassica napus HOM05D000545 ORTHO05D000539 2.7e-07 58.5 32 75.0
BolC4t22992H Brassica oleracea HOM05D000545 ORTHO05D000539 2.7e-07 58.5 32 75.0
Thhalv10009032m.g Eutrema salsugineum HOM05D000545 ORTHO05D000539 3.5e-07 58.2 40 67.5
arahy.Tifrunner.gnm1.ann1.EWBI0W Arachis hypogaea HOM05D000545 ORTHO05D004272 7.7e-07 57.0 60 53.3
QL07p027452 Quercus lobata HOM05D000545 ORTHO05D004272 7.7e-07 57.0 40 65.0
AT1G30500 Arabidopsis thaliana HOM05D000545 ORTHO05D000539 1.0e-06 56.6 43 55.8
Eucgr.A02570 Eucalyptus grandis HOM05D000545 ORTHO05D004272 1.0e-06 56.6 44 59.1
Psat6g092920 Pisum sativum HOM05D000545 ORTHO05D004272 1.3e-06 56.2 56 53.6
TWI74G0878 Tripterygium wilfordii HOM05D000545 ORTHO05D004272 1.3e-06 56.2 35 65.7
AL1G44530 Arabidopsis lyrata HOM05D000545 ORTHO05D000539 2.2e-06 55.5 44 59.1
BcaB07g32661 Brassica carinata HOM05D000545 ORTHO05D000539 2.9e-06 55.1 56 55.4
CiPaw.10G019000 Carya illinoinensis HOM05D000545 ORTHO05D004272 2.9e-06 55.1 43 58.1
THA.LOC104798601 Tarenaya hassleriana HOM05D000545 ORTHO05D000539 2.9e-06 55.1 47 57.4
Aa31LG5G16110 Aethionema arabicum HOM05D000545 ORTHO05D004272 3.8e-06 54.7 47 48.9
BcaB07g32685 Brassica carinata HOM05D000545 ORTHO05D000539 3.8e-06 54.7 56 55.4
C05p29500 Brassica napus HOM05D000545 ORTHO05D000539 3.8e-06 54.7 56 55.4
BolC5t31680H Brassica oleracea HOM05D000545 ORTHO05D000539 3.8e-06 54.7 56 55.4
CARHR029910 Cardamine hirsuta HOM05D000545 ORTHO05D000539 3.8e-06 54.7 40 65.0
Glyma.03G203000 Glycine max HOM05D000545 ORTHO05D004272 3.8e-06 54.7 63 46.0
arahy.Tifrunner.gnm1.ann1.HITK0G Arachis hypogaea HOM05D000545 ORTHO05D004272 5.0e-06 54.3 40 57.5
arahy.Tifrunner.gnm1.ann1.RS70VX Arachis hypogaea HOM05D000545 ORTHO05D004272 5.0e-06 54.3 40 57.5
arahy.Tifrunner.gnm1.ann1.WXE8TN Arachis hypogaea HOM05D000545 ORTHO05D004272 5.0e-06 54.3 60 51.7
A09p35960 Brassica napus HOM05D000545 ORTHO05D000539 5.0e-06 54.3 56 55.4
BraA09t39120Z Brassica rapa HOM05D000545 ORTHO05D000539 5.0e-06 54.3 56 55.4
CAN.G911.38 Capsicum annuum HOM05D000545 ORTHO05D004272 5.0e-06 54.3 35 62.9
Cpa.g.sc125.6 Carica papaya HOM05D000545 ORTHO05D000539 5.0e-06 54.3 64 43.8
Phvul.002G246600 Phaseolus vulgaris HOM05D000545 ORTHO05D000539 5.0e-06 54.3 48 47.9
Thecc.01G410300 Theobroma cacao HOM05D000545 ORTHO05D000539 5.0e-06 54.3 57 47.4
Cc06_g06710 Coffea canephora HOM05D000545 ORTHO05D004272 6.5e-06 53.9 33 66.7
COL.COLO4_29540 Corchorus olitorius HOM05D000545 ORTHO05D004272 6.5e-06 53.9 61 47.5
Glyma.02G195000 Glycine max HOM05D000545 ORTHO05D004272 6.5e-06 53.9 70 38.6
Hma1.2p1_0285F.1_g113920 Hydrangea macrophylla HOM05D000545 ORTHO05D000539 6.5e-06 53.9 47 53.2
Lalb_Chr02g0154401 Lupinus albus HOM05D000545 ORTHO05D004272 6.5e-06 53.9 43 58.1
Nn3g20230 Nelumbo nucifera HOM05D000545 ORTHO05D000539 6.5e-06 53.9 45 57.8
Solyc01g006930.3 Solanum lycopersicum HOM05D000545 ORTHO05D004272 6.5e-06 53.9 34 64.7
Sopen01g002920 Solanum pennellii HOM05D000545 ORTHO05D004272 6.5e-06 53.9 34 64.7
PGSC0003DMG400021365 Solanum tuberosum HOM05D000545 ORTHO05D004272 6.5e-06 53.9 34 64.7
Ca_09065_v3 Cicer arietinum L. HOM05D000545 ORTHO05D004272 8.5e-06 53.5 35 68.6
Ciclev10012232m.g Citrus clementina HOM05D000545 ORTHO05D004272 8.5e-06 53.5 52 44.2
Gohir.D11G332800 Gossypium hirsutum HOM05D000545 ORTHO05D004272 8.5e-06 53.5 42 52.4
Gorai.007G363800 Gossypium raimondii HOM05D000545 ORTHO05D004272 8.5e-06 53.5 42 52.4
Lj1A1056T49 Lonicera japonica HOM05D000545 ORTHO05D004272 8.5e-06 53.5 39 56.4
Lj1g0023770 Lotus japonicus HOM05D000545 ORTHO05D004272 8.5e-06 53.5 50 56.0
Medtr7g106450 Medicago truncatula HOM05D000545 ORTHO05D004272 8.5e-06 53.5 35 68.6
Sp1g26340 Schrenkiella parvula HOM05D000545 ORTHO05D000539 8.5e-06 53.5 27 81.5


User provided reference genes

Program Settings