Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05717 Brassica carinata HOM05D003010 ORTHO05D003623 4.0e-39 164.5 93 100.0
C03p22900 Brassica napus HOM05D003010 ORTHO05D003623 1.2e-35 152.9 85 92.9
BcaB01g03891 Brassica carinata HOM05D003010 ORTHO05D003623 1.2e-32 142.9 86 84.9
BolC3t14689H Brassica oleracea HOM05D003010 ORTHO05D003623 2.1e-32 142.1 92 88.0
A03p19640 Brassica napus HOM05D003010 ORTHO05D003623 6.8e-31 137.1 90 87.8
BraA03t11217Z Brassica rapa HOM05D003010 ORTHO05D003623 6.8e-31 137.1 90 87.8
CARHR129910 Cardamine hirsuta HOM05D003010 ORTHO05D003623 1.5e-30 136.0 93 78.5
Thhalv10017475m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 9.8e-30 133.3 95 75.8
AL4G31750 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 1.3e-29 132.9 93 81.7
AT2G35658 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 6.4e-29 130.6 93 79.6
Carub.0004s1739 Capsella rubella HOM05D003010 ORTHO05D003623 7.1e-28 127.1 93 75.3
Aa31LG9G15070 Aethionema arabicum HOM05D003010 ORTHO05D003623 1.1e-23 113.2 85 75.3
Sp4g17920 Schrenkiella parvula HOM05D003010 ORTHO05D003623 2.0e-22 109.0 68 82.4
Thhalv10026660m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 1.9e-20 102.4 85 65.9
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 4.6e-19 97.8 85 63.5
BcaNung00140 Brassica carinata HOM05D003010 ORTHO05D003623 6.0e-19 97.4 85 63.5
BcaC09g50429 Brassica carinata HOM05D003010 ORTHO05D003623 7.8e-19 97.1 84 65.5
Carub.0007s2449 Capsella rubella HOM05D003010 ORTHO05D003623 1.0e-18 96.7 86 62.8
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 1.3e-18 96.3 87 62.1
BcaC07g38027 Brassica carinata HOM05D001429 ORTHO05D001420 8.1e-16 87.0 84 58.3
A08p12780 Brassica napus HOM05D003010 ORTHO05D003623 8.1e-16 87.0 84 58.3
BraA08t33266Z Brassica rapa HOM05D003010 ORTHO05D003623 1.1e-15 86.7 84 58.3
AT4G16840 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 6.8e-15 84.0 84 59.5
BcaB04g18394 Brassica carinata HOM05D001429 ORTHO05D001420 8.9e-15 83.6 84 57.1
Aa31LG2G13030 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.2e-14 83.2 90 53.3
Prupe.5G059800 Prunus persica HOM05D003010 ORTHO05D003623 1.2e-14 83.2 94 56.4
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 2.2e-13 79.0 85 51.8
BolC8t48419H Brassica oleracea HOM05D003010 ORTHO05D003623 3.8e-13 78.2 78 56.4
Ah.12g054120 Amaranthus hybridus HOM05D003010 ORTHO05D003623 6.4e-13 77.4 51 70.6
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 6.4e-13 77.4 88 51.1
CARHR223470 Cardamine hirsuta HOM05D003010 ORTHO05D003623 1.9e-12 75.9 83 56.6
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 1.9e-12 75.9 85 50.6
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 2.4e-12 75.5 46 73.9
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 7.1e-12 73.9 85 45.9
Sabra03G0052800 Salix brachista HOM05D003010 ORTHO05D003623 9.3e-12 73.6 86 46.5
Potri.001G152700 Populus trichocarpa HOM05D003010 ORTHO05D003623 1.2e-11 73.2 84 50.0
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 1.6e-11 72.8 54 64.8
Manes.01G086500 Manihot esculenta HOM05D003010 ORTHO05D003623 2.1e-11 72.4 55 60.0
Potri.003G081900 Populus trichocarpa HOM05D003010 ORTHO05D003623 3.5e-11 71.6 90 44.4
Rhsim04G0160200 Rhododendron simsii HOM05D003010 ORTHO05D003623 3.5e-11 71.6 85 47.1
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 4.6e-11 71.2 92 44.6
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 4.6e-11 71.2 86 50.0
MD06G1049300 Malus domestica HOM05D003010 ORTHO05D003623 4.6e-11 71.2 91 44.0
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 6.0e-11 70.9 86 48.8
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 6.0e-11 70.9 93 41.9
Actinidia02185 Actinidia chinensis HOM05D003010 ORTHO05D003623 7.8e-11 70.5 85 43.5
Ah.07g199010 Amaranthus hybridus HOM05D003010 ORTHO05D003623 7.8e-11 70.5 86 44.2
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 7.8e-11 70.5 85 45.9
Ciclev10023073m.g Citrus clementina HOM05D003010 ORTHO05D003623 1.0e-10 70.1 92 41.3
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 1.0e-10 70.1 86 48.8
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 1.0e-10 70.1 92 42.4
MD04G1050500 Malus domestica HOM05D003010 ORTHO05D003623 1.3e-10 69.7 88 43.2
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 1.7e-10 69.3 88 45.5
CiPaw.11G070300 Carya illinoinensis HOM05D003010 ORTHO05D003623 2.3e-10 68.9 85 49.4
Eucgr.E00369 Eucalyptus grandis HOM05D003010 ORTHO05D003623 2.3e-10 68.9 89 41.6
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.3e-10 68.9 92 43.5
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.3e-10 68.9 92 42.4
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 3.0e-10 68.6 88 43.2
FvH4_5g20070 Fragaria vesca HOM05D003010 ORTHO05D003623 3.0e-10 68.6 45 68.9
FAN04G3127 Fragaria x ananassa HOM05D003010 ORTHO05D003623 3.0e-10 68.6 45 68.9
FAN08G3583 Fragaria x ananassa HOM05D003010 ORTHO05D003623 3.0e-10 68.6 45 68.9
FAN13G2988 Fragaria x ananassa HOM05D003010 ORTHO05D003623 3.0e-10 68.6 45 68.9
FAN18G3981 Fragaria x ananassa HOM05D003010 ORTHO05D003623 3.0e-10 68.6 45 68.9
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 3.0e-10 68.6 85 48.2
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 3.0e-10 68.6 92 42.4
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 3.9e-10 68.2 87 47.1
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 6.6e-10 67.4 88 45.5
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 8.7e-10 67.0 92 42.4
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 8.7e-10 67.0 91 42.9
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 1.1e-09 66.6 92 42.4
RcHm_v2.0_Chr7g0204931 Rosa chinensis HOM05D003010 ORTHO05D003623 1.1e-09 66.6 89 49.4
Actinidia25899 Actinidia chinensis HOM05D003010 ORTHO05D003623 1.5e-09 66.2 86 44.2
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 1.5e-09 66.2 100 47.0
SGA_v2.0_scaffold104G30217 Striga asiatica HOM05D003010 ORTHO05D003623 1.5e-09 66.2 88 44.3
TWI39G0461 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 1.5e-09 66.2 62 50.0
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 1.5e-09 66.2 86 44.2
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 1.9e-09 65.9 87 43.7
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 1.9e-09 65.9 89 46.1
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 2.5e-09 65.5 92 41.3
Cc08_g11590 Coffea canephora HOM05D003010 ORTHO05D003623 3.3e-09 65.1 46 60.9
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 3.3e-09 65.1 94 42.6
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 3.3e-09 65.1 92 43.5
TPR.G31425 Trifolium pratense HOM05D003010 ORTHO05D003623 4.3e-09 64.7 58 46.6
Atru.chr9.1234 Acer truncatum HOM05D003010 ORTHO05D003623 5.6e-09 64.3 57 54.4
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 5.6e-09 64.3 87 40.2
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 5.6e-09 64.3 87 40.2
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 7.3e-09 63.9 86 43.0
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 7.3e-09 63.9 92 43.5
Glyma.01G205800 Glycine max HOM05D003010 ORTHO05D003623 9.6e-09 63.5 53 54.7
Gohir.D09G249800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 9.6e-09 63.5 88 45.5
Gorai.006G274200 Gossypium raimondii HOM05D003010 ORTHO05D003623 9.6e-09 63.5 88 45.5
arahy.Tifrunner.gnm1.ann1.I909QJ Arachis hypogaea HOM05D003010 ORTHO05D003623 1.6e-08 62.8 90 43.3
arahy.Tifrunner.gnm1.ann1.Y5VFEC Arachis hypogaea HOM05D003010 ORTHO05D003623 1.6e-08 62.8 90 43.3
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 2.1e-08 62.4 50 56.0
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 2.8e-08 62.0 50 56.0
Medtr5g013240 Medicago truncatula HOM05D003010 ORTHO05D003623 2.8e-08 62.0 48 56.2
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 2.8e-08 62.0 86 47.7
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 2.8e-08 62.0 45 62.2
Lalb_Chr09g0324231 Lupinus albus HOM05D003010 ORTHO05D003623 3.6e-08 61.6 49 55.1
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 4.8e-08 61.2 89 44.9
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 4.8e-08 61.2 92 43.5
HPP92_023172 Vanilla planifolia HOM05D003010 ORTHO05D003623 4.8e-08 61.2 89 40.4
Eucgr.A02926 Eucalyptus grandis HOM05D003010 ORTHO05D003623 6.2e-08 60.8 87 43.7
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 8.1e-08 60.5 45 60.0
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 8.1e-08 60.5 90 41.1
AUR62018864 Chenopodium quinoa HOM05D003010 ORTHO05D003623 1.1e-07 60.1 37 70.3
Phvul.007G138100 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 1.1e-07 60.1 50 56.0
PGR042G0835 Punica granatum HOM05D003010 ORTHO05D003623 1.1e-07 60.1 44 59.1
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 1.1e-07 60.1 52 53.8
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 1.1e-07 60.1 52 53.8
Aqoxy3G02705 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 1.4e-07 59.7 50 56.0
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.4e-07 59.7 46 58.7
Cfa013595 Carpinus fangiana HOM05D000255 ORTHO05D000935 1.8e-07 59.3 90 41.1
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 1.8e-07 59.3 47 53.2
Haze_22213 Corylus avellana HOM05D000255 ORTHO05D000935 2.4e-07 58.9 90 41.1
Gohir.A09G248900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 2.4e-07 58.9 86 43.0
Lsat_1_v5_gn_4_126000 Lactuca sativa HOM05D003010 ORTHO05D003623 2.4e-07 58.9 85 40.0
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 2.4e-07 58.9 90 45.6
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.4e-07 58.9 92 40.2
TPR.G13393 Trifolium pratense HOM05D003010 ORTHO05D003623 2.4e-07 58.9 46 54.3
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 2.4e-07 58.9 45 57.8
Ciclev10007152m.g Citrus clementina HOM05D003010 ORTHO05D003623 3.1e-07 58.5 86 40.7
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 3.1e-07 58.5 88 44.3
FAN01G3086 Fragaria x ananassa HOM05D003010 ORTHO05D003623 3.1e-07 58.5 92 42.4
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 3.1e-07 58.5 90 41.1
Gorai.003G176600 Gossypium raimondii HOM05D003010 ORTHO05D003623 4.0e-07 58.2 85 42.4
Lj5g0011838 Lotus japonicus HOM05D003010 ORTHO05D003623 4.0e-07 58.2 90 42.2
Gohir.D03G167000 Gossypium hirsutum HOM05D003010 ORTHO05D003623 5.3e-07 57.8 85 42.4
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 5.3e-07 57.8 89 43.8
Solyc05g052080.1 Solanum lycopersicum HOM05D003010 ORTHO05D003623 5.3e-07 57.8 94 39.4
vmacro00038 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 5.3e-07 57.8 90 38.9
CiPaw.07G184100 Carya illinoinensis HOM05D003010 ORTHO05D003623 6.9e-07 57.4 47 53.2
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 6.9e-07 57.4 87 39.1
FAN10G3636 Fragaria x ananassa HOM05D003010 ORTHO05D003623 6.9e-07 57.4 50 56.0
Hma1.2p1_1014F.1_g248010 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 6.9e-07 57.4 90 45.6
Hma1.2p1_1305F.1_g274559 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 6.9e-07 57.4 90 45.6
Lsat_1_v5_gn_2_127061 Lactuca sativa HOM05D003010 ORTHO05D003623 6.9e-07 57.4 93 41.9
PGR042G0596 Punica granatum HOM05D003010 ORTHO05D003623 6.9e-07 57.4 50 52.0
Sabra01G0057700 Salix brachista HOM05D000255 ORTHO05D000935 6.9e-07 57.4 47 55.3
Actinidia01040 Actinidia chinensis HOM05D000255 ORTHO05D000935 9.0e-07 57.0 88 40.9
arahy.Tifrunner.gnm1.ann1.AIXL5Y Arachis hypogaea HOM05D003010 ORTHO05D003623 9.0e-07 57.0 45 55.6
arahy.Tifrunner.gnm1.ann1.YNCC4F Arachis hypogaea HOM05D003010 ORTHO05D003623 9.0e-07 57.0 45 55.6
Migut.F00533 Erythranthe guttata HOM05D003010 ORTHO05D003623 9.0e-07 57.0 45 55.6
FvH4_7g26830 Fragaria vesca HOM05D003010 ORTHO05D003623 9.0e-07 57.0 88 42.0
FAN03G0814 Fragaria x ananassa HOM05D000255 ORTHO05D003623 9.0e-07 57.0 88 42.0
Potri.001G080500 Populus trichocarpa HOM05D003010 ORTHO05D003623 9.0e-07 57.0 47 55.3
BcaC06g33261 Brassica carinata HOM05D003010 ORTHO05D003623 1.2e-06 56.6 88 44.3
A03p47240 Brassica napus HOM05D003010 ORTHO05D003623 1.2e-06 56.6 88 44.3
C07p45350 Brassica napus HOM05D003010 ORTHO05D003623 1.2e-06 56.6 88 44.3
BolC7t45056H Brassica oleracea HOM05D003010 ORTHO05D003623 1.2e-06 56.6 88 44.3
BraA03t13851Z Brassica rapa HOM05D003010 ORTHO05D003623 1.2e-06 56.6 88 44.3
CDE04G1477 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 1.2e-06 56.6 93 34.4
QL09p027705 Quercus lobata HOM05D003010 ORTHO05D003623 1.2e-06 56.6 84 39.3
CARHR275430 Cardamine hirsuta HOM05D003010 ORTHO05D003623 1.5e-06 56.2 87 43.7
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 1.5e-06 56.2 45 55.6
THA.LOC104801625 Tarenaya hassleriana HOM05D003010 ORTHO05D003623 1.5e-06 56.2 46 56.5
Aqoxy7G02055 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 2.0e-06 55.8 89 41.6
Phvul.002G000700 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 2.6e-06 55.5 60 45.0
AL8G38370 Arabidopsis lyrata HOM05D003010 ORTHO05D003623 3.4e-06 55.1 88 43.2
AT5G61630 Arabidopsis thaliana HOM05D003010 ORTHO05D003623 3.4e-06 55.1 88 43.2
BcaC06g33143 Brassica carinata HOM05D003010 ORTHO05D003623 3.4e-06 55.1 88 43.2
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 4.4e-06 54.7 93 35.5
ClCG00G004980 Citrullus lanatus HOM05D003010 ORTHO05D003623 4.4e-06 54.7 88 36.4
ClCG10G002350 Citrullus lanatus HOM05D003010 ORTHO05D003623 4.4e-06 54.7 88 36.4
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 4.4e-06 54.7 94 38.3
Gohir.A03G005500 Gossypium hirsutum HOM05D003010 ORTHO05D003623 4.4e-06 54.7 85 40.0
QL12p009508 Quercus lobata HOM05D003010 ORTHO05D003623 4.4e-06 54.7 79 50.6
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 5.8e-06 54.3 87 33.3
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 5.8e-06 54.3 87 40.2
Thhalv10005478m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 5.8e-06 54.3 88 43.2
HanXRQChr14g0461131 Helianthus annuus HOM05D003010 ORTHO05D003623 5.8e-06 54.3 52 55.8
A03p03330 Brassica napus HOM05D003010 ORTHO05D003623 7.6e-06 53.9 88 40.9
BraA03t09685Z Brassica rapa HOM05D003010 ORTHO05D003623 7.6e-06 53.9 88 40.9
CsaV3_4G004320 Cucumis sativus L. HOM05D003010 ORTHO05D003623 7.6e-06 53.9 89 33.7
FAN06G5032 Fragaria x ananassa HOM05D000255 ORTHO05D000935 7.6e-06 53.9 88 40.9
QL02p087437 Quercus lobata HOM05D009305 ORTHO05D010439 7.6e-06 53.9 87 40.2
RcHm_v2.0_Chr1g0373521 Rosa chinensis HOM05D003010 ORTHO05D003623 7.6e-06 53.9 48 56.2
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 9.9e-06 53.5 90 37.8


User provided reference genes

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